data_5LXQ # _model_server_result.job_id PemB-IiBJR8Q_h0rkH36ZQ _model_server_result.datetime_utc '2024-10-19 08:25:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5LXQ # _exptl.entry_id 5LXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.43 _cell.angle_gamma 90 _cell.entry_id 5LXQ _cell.length_a 166.93 _cell.length_b 125.56 _cell.length_c 61.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2G ATP . A ATP 601 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 E O1A ATP . A ATP 601 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc3 G O1G ATP . H ATP 601 1_555 H ZN ZN . H ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc4 G O2G ATP . H ATP 601 1_555 H ZN ZN . H ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 G O2A ATP . H ATP 601 1_555 H ZN ZN . H ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5LXQ _atom_sites.fract_transf_matrix[1][1] 0.005991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002351 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 601 1 ATP ATP . F 4 ZN A 1 602 2 ZN ZN . G 3 ATP H 1 601 1 ATP ATP . H 4 ZN H 1 602 2 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 480.792 -56.283 125.281 0.87 96.84 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . E 3 481.402 -55.113 124.482 0.87 94.56 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . E 3 481.299 -57.673 124.868 0.87 95.8 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . E 3 479.237 -56.211 125.104 0.87 67.4 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . E 3 481.323 -57.086 128.036 0.87 72.49 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . E 3 481.856 -58.43 127.539 0.87 55.28 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . E 3 482.256 -56.441 129.067 0.87 76.45 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . E 3 481.226 -56.092 126.797 0.87 89.47 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . E 3 478.534 -57.012 128.06 0.87 29.21 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . E 3 478.443 -57.937 126.923 0.87 30.98 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . E 3 478.377 -55.534 127.665 0.87 29.08 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . E 3 479.93 -57.237 128.741 0.87 45.68 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . E 3 477.511 -57.333 129.268 0.87 29.65 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . E 3 476.88 -58.623 129.442 0.87 29.97 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . E 3 476.205 -58.675 130.786 0.87 30.51 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . E 3 477.194 -58.494 131.821 0.87 37.65 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . E 3 475.177 -57.576 131.011 0.87 30.67 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . E 3 474.116 -57.961 131.882 0.87 40.42 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . E 3 476.013 -56.468 131.645 0.87 30.52 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . E 3 475.126 -55.689 132.427 0.87 37.98 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . E 3 476.973 -57.28 132.51 0.87 30.72 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . E 3 478.28 -56.666 132.741 0.87 30.5 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . E 3 479.062 -56.043 131.805 0.87 36.95 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . E 3 480.225 -55.639 132.262 0.87 30.04 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . E 3 480.198 -56.008 133.6 0.87 33.64 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . E 3 481.1 -55.796 134.661 0.87 30.95 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . E 3 482.181 -55.036 134.568 0.87 42.6 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . E 3 480.772 -56.287 135.874 0.87 31.59 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . E 3 479.593 -56.901 136.019 0.87 43.34 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . E 3 478.645 -57.124 135.104 0.87 38.61 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . E 3 479.011 -56.648 133.905 0.87 39.46 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #