data_5LXV # _model_server_result.job_id klPve0yruC-Q8F9WFCQjug _model_server_result.datetime_utc '2024-10-28 02:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 5LXV # _exptl.entry_id 5LXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LXV _cell.length_a 59.59 _cell.length_b 66.73 _cell.length_c 109.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 61 B CYS 926 1_555 D SG CYS 61 D CYS 926 3_847 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc1 B OD1 ASP 27 B ASP 892 1_555 E CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 B OD1 ASP 29 B ASP 894 1_555 E CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 B OD1 ASP 31 B ASP 896 1_555 E CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 B O GLU 33 B GLU 898 1_555 E CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 B OD1 ASP 38 B ASP 903 1_555 E CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc6 B OD2 ASP 38 B ASP 903 1_555 E CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 B OD1 ASP 58 B ASP 923 1_555 F CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 B OD1 ASN 60 B ASN 925 1_555 F CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc9 B OD1 ASP 62 B ASP 927 1_555 F CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 B O VAL 64 B VAL 929 1_555 F CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc11 B OD1 ASP 69 B ASP 934 1_555 F CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc12 B OD2 ASP 69 B ASP 934 1_555 F CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc13 E CA CA . B CA 1001 1_555 J O HOH . B HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc14 F CA CA . B CA 1002 1_555 J O HOH . B HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc15 D OD1 ASP 27 D ASP 892 1_555 G CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 D OD1 ASP 29 D ASP 894 1_555 G CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc17 D OD1 ASP 31 D ASP 896 1_555 G CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc18 D O GLU 33 D GLU 898 1_555 G CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc19 D OD1 ASP 38 D ASP 903 1_555 G CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc20 D OD2 ASP 38 D ASP 903 1_555 G CA CA . D CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc21 D OD1 ASP 58 D ASP 923 1_555 H CA CA . D CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc22 D OD1 ASN 60 D ASN 925 1_555 H CA CA . D CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc23 D OD1 ASP 62 D ASP 927 1_555 H CA CA . D CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc24 D O VAL 64 D VAL 929 1_555 H CA CA . D CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc25 D OD1 ASP 69 D ASP 934 1_555 H CA CA . D CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc26 D OD2 ASP 69 D ASP 934 1_555 H CA CA . D CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc27 G CA CA . D CA 1001 1_555 L O HOH . D HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc28 H CA CA . D CA 1002 1_555 L O HOH . D HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LXV _atom_sites.fract_transf_matrix[1][1] 0.016781 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA B 1 1001 6 CA CA . F 3 CA B 1 1002 7 CA CA . G 3 CA D 1 1001 5 CA CA . H 3 CA D 1 1002 8 CA CA . I 4 HOH A 1 201 199 HOH HOH . I 4 HOH A 2 202 196 HOH HOH . I 4 HOH A 3 203 36 HOH HOH . I 4 HOH A 4 204 9 HOH HOH . I 4 HOH A 5 205 34 HOH HOH . I 4 HOH A 6 206 39 HOH HOH . I 4 HOH A 7 207 16 HOH HOH . I 4 HOH A 8 208 63 HOH HOH . I 4 HOH A 9 209 23 HOH HOH . I 4 HOH A 10 210 32 HOH HOH . I 4 HOH A 11 211 172 HOH HOH . I 4 HOH A 12 212 5 HOH HOH . I 4 HOH A 13 213 42 HOH HOH . I 4 HOH A 14 214 98 HOH HOH . I 4 HOH A 15 215 15 HOH HOH . I 4 HOH A 16 216 64 HOH HOH . I 4 HOH A 17 217 7 HOH HOH . I 4 HOH A 18 218 107 HOH HOH . I 4 HOH A 19 219 30 HOH HOH . I 4 HOH A 20 220 44 HOH HOH . I 4 HOH A 21 221 71 HOH HOH . I 4 HOH A 22 222 128 HOH HOH . I 4 HOH A 23 223 200 HOH HOH . I 4 HOH A 24 224 86 HOH HOH . I 4 HOH A 25 225 10 HOH HOH . I 4 HOH A 26 226 8 HOH HOH . I 4 HOH A 27 227 203 HOH HOH . I 4 HOH A 28 228 209 HOH HOH . I 4 HOH A 29 229 79 HOH HOH . I 4 HOH A 30 230 118 HOH HOH . I 4 HOH A 31 231 45 HOH HOH . I 4 HOH A 32 232 188 HOH HOH . I 4 HOH A 33 233 14 HOH HOH . I 4 HOH A 34 234 26 HOH HOH . I 4 HOH A 35 235 96 HOH HOH . I 4 HOH A 36 236 182 HOH HOH . I 4 HOH A 37 237 82 HOH HOH . I 4 HOH A 38 238 29 HOH HOH . I 4 HOH A 39 239 35 HOH HOH . I 4 HOH A 40 240 33 HOH HOH . I 4 HOH A 41 241 57 HOH HOH . I 4 HOH A 42 242 156 HOH HOH . I 4 HOH A 43 243 181 HOH HOH . I 4 HOH A 44 244 60 HOH HOH . I 4 HOH A 45 245 158 HOH HOH . J 4 HOH B 1 1101 194 HOH HOH . J 4 HOH B 2 1102 177 HOH HOH . J 4 HOH B 3 1103 72 HOH HOH . J 4 HOH B 4 1104 2 HOH HOH . J 4 HOH B 5 1105 61 HOH HOH . J 4 HOH B 6 1106 55 HOH HOH . J 4 HOH B 7 1107 18 HOH HOH . J 4 HOH B 8 1108 184 HOH HOH . J 4 HOH B 9 1109 216 HOH HOH . J 4 HOH B 10 1110 48 HOH HOH . J 4 HOH B 11 1111 164 HOH HOH . J 4 HOH B 12 1112 126 HOH HOH . J 4 HOH B 13 1113 214 HOH HOH . J 4 HOH B 14 1114 28 HOH HOH . J 4 HOH B 15 1115 25 HOH HOH . J 4 HOH B 16 1116 168 HOH HOH . J 4 HOH B 17 1117 189 HOH HOH . J 4 HOH B 18 1118 24 HOH HOH . J 4 HOH B 19 1119 157 HOH HOH . K 4 HOH C 1 201 201 HOH HOH . K 4 HOH C 2 202 197 HOH HOH . K 4 HOH C 3 203 21 HOH HOH . K 4 HOH C 4 204 170 HOH HOH . K 4 HOH C 5 205 4 HOH HOH . K 4 HOH C 6 206 173 HOH HOH . K 4 HOH C 7 207 40 HOH HOH . K 4 HOH C 8 208 208 HOH HOH . K 4 HOH C 9 209 186 HOH HOH . K 4 HOH C 10 210 195 HOH HOH . K 4 HOH C 11 211 171 HOH HOH . K 4 HOH C 12 212 198 HOH HOH . K 4 HOH C 13 213 166 HOH HOH . K 4 HOH C 14 214 51 HOH HOH . K 4 HOH C 15 215 50 HOH HOH . K 4 HOH C 16 216 13 HOH HOH . K 4 HOH C 17 217 206 HOH HOH . K 4 HOH C 18 218 193 HOH HOH . K 4 HOH C 19 219 73 HOH HOH . K 4 HOH C 20 220 210 HOH HOH . K 4 HOH C 21 221 1 HOH HOH . K 4 HOH C 22 222 19 HOH HOH . K 4 HOH C 23 223 17 HOH HOH . K 4 HOH C 24 224 80 HOH HOH . K 4 HOH C 25 225 59 HOH HOH . K 4 HOH C 26 226 20 HOH HOH . K 4 HOH C 27 227 191 HOH HOH . K 4 HOH C 28 228 180 HOH HOH . K 4 HOH C 29 229 211 HOH HOH . K 4 HOH C 30 230 176 HOH HOH . K 4 HOH C 31 231 192 HOH HOH . K 4 HOH C 32 232 190 HOH HOH . K 4 HOH C 33 233 27 HOH HOH . K 4 HOH C 34 234 204 HOH HOH . K 4 HOH C 35 235 215 HOH HOH . L 4 HOH D 1 1101 3 HOH HOH . L 4 HOH D 2 1102 38 HOH HOH . L 4 HOH D 3 1103 169 HOH HOH . L 4 HOH D 4 1104 6 HOH HOH . L 4 HOH D 5 1105 213 HOH HOH . L 4 HOH D 6 1106 175 HOH HOH . L 4 HOH D 7 1107 205 HOH HOH . L 4 HOH D 8 1108 207 HOH HOH . L 4 HOH D 9 1109 167 HOH HOH . L 4 HOH D 10 1110 178 HOH HOH . L 4 HOH D 11 1111 202 HOH HOH . L 4 HOH D 12 1112 165 HOH HOH . L 4 HOH D 13 1113 212 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 89.476 _atom_site.Cartn_y 89.368 _atom_site.Cartn_z 128.561 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #