data_5LXW # _model_server_result.job_id rKDMaS6WLHUFFzoeKeSLzw _model_server_result.datetime_utc '2024-10-19 16:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5LXW # _exptl.entry_id 5LXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LXW _cell.length_a 79.37 _cell.length_b 79.37 _cell.length_c 37.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf4 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf5 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NH1 ARG 14 A ARG 14 1_555 H PT PT . A PT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 A ND1 HIS 15 A HIS 15 1_555 F PT PT . A PT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 A O SER 60 A SER 60 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 A O CYS 64 A CYS 64 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 A OG SER 72 A SER 72 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc8 A O ARG 73 A ARG 73 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc9 D NA NA . A NA 203 1_555 N O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc10 D NA NA . A NA 203 1_555 N O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc11 F PT PT . A PT 205 1_555 J N NH3 . A NH3 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc12 F PT PT . A PT 205 1_555 K N NH3 . A NH3 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5LXW _atom_sites.fract_transf_matrix[1][1] 0.012599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 201 DMS DMS . C 3 CL A 1 202 202 CL CL . D 4 NA A 1 203 204 NA NA . E 5 PT A 1 204 330 PT PT . F 5 PT A 1 205 331 PT PT . G 3 CL A 1 206 332 CL CL . H 5 PT A 1 207 333 PT PT . I 3 CL A 1 208 334 CL CL . J 6 NH3 A 1 209 336 NH3 NH3 . K 6 NH3 A 1 210 337 NH3 NH3 . L 3 CL A 1 211 339 CL CL . M 3 CL A 1 212 340 CL CL . N 7 HOH A 1 301 416 HOH HOH . N 7 HOH A 2 302 375 HOH HOH . N 7 HOH A 3 303 423 HOH HOH . N 7 HOH A 4 304 426 HOH HOH . N 7 HOH A 5 305 351 HOH HOH . N 7 HOH A 6 306 410 HOH HOH . N 7 HOH A 7 307 421 HOH HOH . N 7 HOH A 8 308 304 HOH HOH . N 7 HOH A 9 309 360 HOH HOH . N 7 HOH A 10 310 413 HOH HOH . N 7 HOH A 11 311 408 HOH HOH . N 7 HOH A 12 312 310 HOH HOH . N 7 HOH A 13 313 318 HOH HOH . N 7 HOH A 14 314 420 HOH HOH . N 7 HOH A 15 315 386 HOH HOH . N 7 HOH A 16 316 394 HOH HOH . N 7 HOH A 17 317 361 HOH HOH . N 7 HOH A 18 318 306 HOH HOH . N 7 HOH A 19 319 309 HOH HOH . N 7 HOH A 20 320 403 HOH HOH . N 7 HOH A 21 321 308 HOH HOH . N 7 HOH A 22 322 302 HOH HOH . N 7 HOH A 23 323 301 HOH HOH . N 7 HOH A 24 324 359 HOH HOH . N 7 HOH A 25 325 307 HOH HOH . N 7 HOH A 26 326 368 HOH HOH . N 7 HOH A 27 327 350 HOH HOH . N 7 HOH A 28 328 376 HOH HOH . N 7 HOH A 29 329 372 HOH HOH . N 7 HOH A 30 330 341 HOH HOH . N 7 HOH A 31 331 374 HOH HOH . N 7 HOH A 32 332 380 HOH HOH . N 7 HOH A 33 333 387 HOH HOH . N 7 HOH A 34 334 311 HOH HOH . N 7 HOH A 35 335 353 HOH HOH . N 7 HOH A 36 336 314 HOH HOH . N 7 HOH A 37 337 316 HOH HOH . N 7 HOH A 38 338 383 HOH HOH . N 7 HOH A 39 339 343 HOH HOH . N 7 HOH A 40 340 378 HOH HOH . N 7 HOH A 41 341 356 HOH HOH . N 7 HOH A 42 342 398 HOH HOH . N 7 HOH A 43 343 402 HOH HOH . N 7 HOH A 44 344 363 HOH HOH . N 7 HOH A 45 345 415 HOH HOH . N 7 HOH A 46 346 348 HOH HOH . N 7 HOH A 47 347 399 HOH HOH . N 7 HOH A 48 348 313 HOH HOH . N 7 HOH A 49 349 352 HOH HOH . N 7 HOH A 50 350 373 HOH HOH . N 7 HOH A 51 351 344 HOH HOH . N 7 HOH A 52 352 365 HOH HOH . N 7 HOH A 53 353 405 HOH HOH . N 7 HOH A 54 354 320 HOH HOH . N 7 HOH A 55 355 326 HOH HOH . N 7 HOH A 56 356 327 HOH HOH . N 7 HOH A 57 357 322 HOH HOH . N 7 HOH A 58 358 419 HOH HOH . N 7 HOH A 59 359 303 HOH HOH . N 7 HOH A 60 360 401 HOH HOH . N 7 HOH A 61 361 315 HOH HOH . N 7 HOH A 62 362 392 HOH HOH . N 7 HOH A 63 363 377 HOH HOH . N 7 HOH A 64 364 411 HOH HOH . N 7 HOH A 65 365 323 HOH HOH . N 7 HOH A 66 366 371 HOH HOH . N 7 HOH A 67 367 390 HOH HOH . N 7 HOH A 68 368 409 HOH HOH . N 7 HOH A 69 369 366 HOH HOH . N 7 HOH A 70 370 428 HOH HOH . N 7 HOH A 71 371 362 HOH HOH . N 7 HOH A 72 372 328 HOH HOH . N 7 HOH A 73 373 384 HOH HOH . N 7 HOH A 74 374 349 HOH HOH . N 7 HOH A 75 375 346 HOH HOH . N 7 HOH A 76 376 321 HOH HOH . N 7 HOH A 77 377 382 HOH HOH . N 7 HOH A 78 378 417 HOH HOH . N 7 HOH A 79 379 364 HOH HOH . N 7 HOH A 80 380 342 HOH HOH . N 7 HOH A 81 381 370 HOH HOH . N 7 HOH A 82 382 422 HOH HOH . N 7 HOH A 83 383 357 HOH HOH . N 7 HOH A 84 384 425 HOH HOH . N 7 HOH A 85 385 355 HOH HOH . N 7 HOH A 86 386 381 HOH HOH . N 7 HOH A 87 387 385 HOH HOH . N 7 HOH A 88 388 427 HOH HOH . N 7 HOH A 89 389 379 HOH HOH . N 7 HOH A 90 390 400 HOH HOH . N 7 HOH A 91 391 367 HOH HOH . N 7 HOH A 92 392 396 HOH HOH . N 7 HOH A 93 393 345 HOH HOH . N 7 HOH A 94 394 418 HOH HOH . N 7 HOH A 95 395 354 HOH HOH . N 7 HOH A 96 396 412 HOH HOH . N 7 HOH A 97 397 395 HOH HOH . N 7 HOH A 98 398 404 HOH HOH . N 7 HOH A 99 399 414 HOH HOH . N 7 HOH A 100 400 424 HOH HOH . N 7 HOH A 101 401 389 HOH HOH . N 7 HOH A 102 402 393 HOH HOH . N 7 HOH A 103 403 358 HOH HOH . N 7 HOH A 104 404 391 HOH HOH . N 7 HOH A 105 405 347 HOH HOH . N 7 HOH A 106 406 407 HOH HOH . N 7 HOH A 107 407 406 HOH HOH . N 7 HOH A 108 408 397 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 -22.628 3.249 -3.236 1 30.7 ? S DMS 201 A 1 HETATM 2 O O DMS . . . B 2 -21.43 3.78 -2.586 1 20.92 ? O DMS 201 A 1 HETATM 3 C C1 DMS . . . B 2 -23.887 2.894 -1.987 1 30.87 ? C1 DMS 201 A 1 HETATM 4 C C2 DMS . . . B 2 -23.445 4.546 -4.189 1 33.53 ? C2 DMS 201 A 1 HETATM 5 H H11 DMS . . . B 2 -23.547 2.116 -1.354 1 37.04 ? H11 DMS 201 A 1 HETATM 6 H H12 DMS . . . B 2 -24.069 3.764 -1.412 1 37.04 ? H12 DMS 201 A 1 HETATM 7 H H13 DMS . . . B 2 -24.783 2.593 -2.465 1 37.04 ? H13 DMS 201 A 1 HETATM 8 H H21 DMS . . . B 2 -24.355 4.174 -4.583 1 40.23 ? H21 DMS 201 A 1 HETATM 9 H H22 DMS . . . B 2 -22.815 4.85 -4.984 1 40.23 ? H22 DMS 201 A 1 HETATM 10 H H23 DMS . . . B 2 -23.644 5.374 -3.56 1 40.23 ? H23 DMS 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #