data_5LY7 # _model_server_result.job_id G2fiHSttPzf4ZNXv2gKRdg _model_server_result.datetime_utc '2024-11-27 18:10:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ly7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5LY7 # _exptl.entry_id 5LY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.57 _cell.angle_gamma 90 _cell.entry_id 5LY7 _cell.length_a 65.14 _cell.length_b 66.93 _cell.length_c 74.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 267 n n C1 C2 PEG sing 268 n n C1 H11 PEG sing 269 n n C1 H12 PEG sing 270 n n O1 HO1 PEG sing 271 n n C2 O2 PEG sing 272 n n C2 H21 PEG sing 273 n n C2 H22 PEG sing 274 n n O2 C3 PEG sing 275 n n C3 C4 PEG sing 276 n n C3 H31 PEG sing 277 n n C3 H32 PEG sing 278 n n C4 O4 PEG sing 279 n n C4 H41 PEG sing 280 n n C4 H42 PEG sing 281 n n O4 HO4 PEG sing 282 n n # _atom_sites.entry_id 5LY7 _atom_sites.fract_transf_matrix[1][1] 0.015352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 401 1 PEG PEG . D 3 NOK A 1 402 1 NOK IMI . E 2 PEG B 1 401 2 PEG PEG . F 3 NOK B 1 402 2 NOK IMI . G 4 HOH A 1 501 4 HOH HOH . G 4 HOH A 2 502 5 HOH HOH . G 4 HOH A 3 503 2 HOH HOH . G 4 HOH A 4 504 9 HOH HOH . G 4 HOH A 5 505 6 HOH HOH . G 4 HOH A 6 506 1 HOH HOH . G 4 HOH A 7 507 3 HOH HOH . G 4 HOH A 8 508 14 HOH HOH . G 4 HOH A 9 509 13 HOH HOH . G 4 HOH A 10 510 11 HOH HOH . G 4 HOH A 11 511 10 HOH HOH . H 4 HOH B 1 501 7 HOH HOH . H 4 HOH B 2 502 12 HOH HOH . H 4 HOH B 3 503 8 HOH HOH . H 4 HOH B 4 504 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 2 191.868 -13.204 50.955 1 42.82 ? C1 PEG 401 A 1 HETATM 2 O O1 PEG . . . C 2 192.173 -12.722 49.642 1 21.25 ? O1 PEG 401 A 1 HETATM 3 C C2 PEG . . . C 2 193.045 -13.923 51.634 1 52.45 ? C2 PEG 401 A 1 HETATM 4 O O2 PEG . . . C 2 192.714 -14.497 52.899 1 27.82 ? O2 PEG 401 A 1 HETATM 5 C C3 PEG . . . C 2 191.979 -15.72 52.921 1 35.63 ? C3 PEG 401 A 1 HETATM 6 C C4 PEG . . . C 2 190.518 -15.474 53.352 1 32.99 ? C4 PEG 401 A 1 HETATM 7 O O4 PEG . . . C 2 189.736 -16.659 53.381 1 9.41 ? O4 PEG 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #