data_5LYH # _model_server_result.job_id KaaoAyg2zZZPDICCSdQtmw _model_server_result.datetime_utc '2024-10-13 09:17:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1901}' # _entry.id 5LYH # _exptl.entry_id 5LYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 557.579 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[2-[4-[2-[[4-[(3-aminocarbonylphenyl)amino]-4-oxidanylidene-butanoyl]amino]ethyl]-1,2,3-triazol-1-yl]ethylsulfamoyl]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LYH _cell.length_a 83.032 _cell.length_b 83.032 _cell.length_c 122.08 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 1618 1_555 A SG CYS 10 A CYS 1618 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? disulf ? disulf2 B SG CYS 10 B CYS 1618 1_555 B SG CYS 10 B CYS 1618 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C24 H27 N7 O7 S' _chem_comp.formula_weight 557.579 _chem_comp.id 7B8 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[2-[4-[2-[[4-[(3-aminocarbonylphenyl)amino]-4-oxidanylidene-butanoyl]amino]ethyl]-1,2,3-triazol-1-yl]ethylsulfamoyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAF CAG 7B8 doub 1 n n CBA CBB 7B8 doub 2 n y CBA CAH 7B8 sing 3 n y CAG CAH 7B8 sing 4 n n CAG NAA 7B8 sing 5 n n CBB CBC 7B8 sing 6 n y CAH CAI 7B8 doub 7 n y CBC CAJ 7B8 doub 8 n y CAI CAJ 7B8 sing 9 n y CAJ NAK 7B8 sing 10 n n NAK CAL 7B8 sing 11 n n CAL OBD 7B8 doub 12 n n CAL CAM 7B8 sing 13 n n CAM CAN 7B8 sing 14 n n OBM CBL 7B8 doub 15 n n CAN CAO 7B8 sing 16 n n OBK CBL 7B8 sing 17 n n CBL CBI 7B8 sing 18 n n CAO NAP 7B8 sing 19 n n CAO OAB 7B8 doub 20 n n NAP CAQ 7B8 sing 21 n n CBI CBH 7B8 doub 22 n y CBI CBJ 7B8 sing 23 n y CBH CBE 7B8 sing 24 n y CAQ CAR 7B8 sing 25 n n CBJ CBG 7B8 doub 26 n y CBE CBF 7B8 doub 27 n y CAR CAS 7B8 sing 28 n n CBG CBF 7B8 sing 29 n y CBG SAY 7B8 sing 30 n n CAT CAS 7B8 doub 31 n y CAT NAU 7B8 sing 32 n y OAE SAY 7B8 doub 33 n n CAS NAC 7B8 sing 34 n y SAY OAZ 7B8 doub 35 n n SAY NAX 7B8 sing 36 n n CAW CAV 7B8 sing 37 n n CAW NAX 7B8 sing 38 n n NAU CAV 7B8 sing 39 n n NAU NAD 7B8 sing 40 n y NAC NAD 7B8 doub 41 n y OBK H1 7B8 sing 42 n n CBJ H2 7B8 sing 43 n n CBH H3 7B8 sing 44 n n CBE H4 7B8 sing 45 n n CBF H5 7B8 sing 46 n n NAX H6 7B8 sing 47 n n CAW H7 7B8 sing 48 n n CAW H8 7B8 sing 49 n n CAV H9 7B8 sing 50 n n CAV H10 7B8 sing 51 n n CAT H11 7B8 sing 52 n n CAR H12 7B8 sing 53 n n CAR H13 7B8 sing 54 n n CAQ H14 7B8 sing 55 n n CAQ H15 7B8 sing 56 n n NAP H16 7B8 sing 57 n n CAN H17 7B8 sing 58 n n CAN H18 7B8 sing 59 n n CAM H19 7B8 sing 60 n n CAM H20 7B8 sing 61 n n NAK H21 7B8 sing 62 n n CAI H22 7B8 sing 63 n n CBC H23 7B8 sing 64 n n CBB H24 7B8 sing 65 n n CBA H25 7B8 sing 66 n n NAA H26 7B8 sing 67 n n NAA H27 7B8 sing 68 n n # _atom_sites.entry_id 5LYH _atom_sites.fract_transf_matrix[1][1] 0.012044 _atom_sites.fract_transf_matrix[1][2] 0.006953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7B8 A 1 1901 2 7B8 DRG . D 2 7B8 B 1 1901 1 7B8 DRG . E 3 HOH A 1 2001 8 HOH HOH . E 3 HOH A 2 2002 2 HOH HOH . E 3 HOH A 3 2003 16 HOH HOH . E 3 HOH A 4 2004 7 HOH HOH . E 3 HOH A 5 2005 5 HOH HOH . E 3 HOH A 6 2006 17 HOH HOH . E 3 HOH A 7 2007 9 HOH HOH . E 3 HOH A 8 2008 18 HOH HOH . E 3 HOH A 9 2009 1 HOH HOH . E 3 HOH A 10 2010 4 HOH HOH . F 3 HOH B 1 2001 3 HOH HOH . F 3 HOH B 2 2002 15 HOH HOH . F 3 HOH B 3 2003 12 HOH HOH . F 3 HOH B 4 2004 6 HOH HOH . F 3 HOH B 5 2005 10 HOH HOH . F 3 HOH B 6 2006 14 HOH HOH . F 3 HOH B 7 2007 11 HOH HOH . F 3 HOH B 8 2008 19 HOH HOH . F 3 HOH B 9 2009 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OBK 7B8 . . . C 2 52.609 70.871 15.15 1 83.1 ? OBK 7B8 1901 A 1 HETATM 2 C CBL 7B8 . . . C 2 53.618 71.567 15.332 1 78.42 ? CBL 7B8 1901 A 1 HETATM 3 O OBM 7B8 . . . C 2 53.818 72.192 16.407 1 65.03 ? OBM 7B8 1901 A 1 HETATM 4 C CBI 7B8 . . . C 2 54.543 71.594 14.328 1 87.94 ? CBI 7B8 1901 A 1 HETATM 5 C CBJ 7B8 . . . C 2 54.18 71.455 12.98 1 100.6 ? CBJ 7B8 1901 A 1 HETATM 6 C CBH 7B8 . . . C 2 55.861 71.761 14.694 1 84.37 ? CBH 7B8 1901 A 1 HETATM 7 C CBE 7B8 . . . C 2 56.815 71.785 13.718 1 87.52 ? CBE 7B8 1901 A 1 HETATM 8 C CBF 7B8 . . . C 2 56.506 71.645 12.389 1 101.97 ? CBF 7B8 1901 A 1 HETATM 9 C CBG 7B8 . . . C 2 55.181 71.493 12.013 1 108.74 ? CBG 7B8 1901 A 1 HETATM 10 S SAY 7B8 . . . C 2 54.887 71.34 10.394 1 122.42 ? SAY 7B8 1901 A 1 HETATM 11 O OAZ 7B8 . . . C 2 54.918 69.828 10.149 1 114.42 ? OAZ 7B8 1901 A 1 HETATM 12 O OAE 7B8 . . . C 2 53.512 71.914 10.024 1 119.01 ? OAE 7B8 1901 A 1 HETATM 13 N NAX 7B8 . . . C 2 56.253 72.246 9.571 1 116.39 ? NAX 7B8 1901 A 1 HETATM 14 C CAW 7B8 . . . C 2 55.965 73.652 9.206 1 114.03 ? CAW 7B8 1901 A 1 HETATM 15 C CAV 7B8 . . . C 2 56.881 74.607 9.986 1 110.69 ? CAV 7B8 1901 A 1 HETATM 16 N NAU 7B8 . . . C 2 56.116 75.665 10.717 1 115.16 ? NAU 7B8 1901 A 1 HETATM 17 C CAT 7B8 . . . C 2 56.197 75.973 12.019 1 116.25 ? CAT 7B8 1901 A 1 HETATM 18 N NAD 7B8 . . . C 2 55.285 76.429 10.181 1 116.47 ? NAD 7B8 1901 A 1 HETATM 19 N NAC 7B8 . . . C 2 54.792 77.225 11.016 1 115.53 ? NAC 7B8 1901 A 1 HETATM 20 C CAS 7B8 . . . C 2 55.349 76.976 12.193 1 110.36 ? CAS 7B8 1901 A 1 HETATM 21 C CAR 7B8 . . . C 2 55.024 77.719 13.505 1 102.15 ? CAR 7B8 1901 A 1 HETATM 22 C CAQ 7B8 . . . C 2 56.128 78.712 13.922 1 94.12 ? CAQ 7B8 1901 A 1 HETATM 23 N NAP 7B8 . . . C 2 55.594 80.101 13.962 1 92.83 ? NAP 7B8 1901 A 1 HETATM 24 C CAO 7B8 . . . C 2 55.695 81.033 14.965 1 86.58 ? CAO 7B8 1901 A 1 HETATM 25 O OAB 7B8 . . . C 2 55.197 82.153 14.858 1 88.41 ? OAB 7B8 1901 A 1 HETATM 26 C CAN 7B8 . . . C 2 56.409 80.667 16.285 1 76.53 ? CAN 7B8 1901 A 1 HETATM 27 C CAM 7B8 . . . C 2 56.845 81.943 17.114 1 76.01 ? CAM 7B8 1901 A 1 HETATM 28 C CAL 7B8 . . . C 2 57.862 81.573 18.231 1 69.94 ? CAL 7B8 1901 A 1 HETATM 29 O OBD 7B8 . . . C 2 58.732 82.365 18.605 1 74.23 ? OBD 7B8 1901 A 1 HETATM 30 N NAK 7B8 . . . C 2 57.577 80.371 18.753 1 62.35 ? NAK 7B8 1901 A 1 HETATM 31 C CAJ 7B8 . . . C 2 58.245 79.646 19.649 1 58.75 ? CAJ 7B8 1901 A 1 HETATM 32 C CAI 7B8 . . . C 2 57.526 78.504 20.022 1 52.5 ? CAI 7B8 1901 A 1 HETATM 33 C CBC 7B8 . . . C 2 59.548 79.805 20.15 1 63.65 ? CBC 7B8 1901 A 1 HETATM 34 C CBB 7B8 . . . C 2 60.047 78.822 21.038 1 56.64 ? CBB 7B8 1901 A 1 HETATM 35 C CBA 7B8 . . . C 2 59.277 77.713 21.404 1 46.64 ? CBA 7B8 1901 A 1 HETATM 36 C CAH 7B8 . . . C 2 57.99 77.542 20.918 1 46.15 ? CAH 7B8 1901 A 1 HETATM 37 C CAG 7B8 . . . C 2 57.186 76.417 21.235 1 42.31 ? CAG 7B8 1901 A 1 HETATM 38 O OAF 7B8 . . . C 2 57.286 75.754 22.278 1 39.13 ? OAF 7B8 1901 A 1 HETATM 39 N NAA 7B8 . . . C 2 56.25 76.084 20.379 1 35.28 ? NAA 7B8 1901 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #