data_5LYH
#
_model_server_result.job_id            2sgGHHMnpC0k7l8FOnLe_A 
_model_server_result.datetime_utc      '2024-10-13 09:18:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1901}' 
#
_entry.id    5LYH 
#
_exptl.entry_id    5LYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              557.579 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[4-[2-[[4-[(3-aminocarbonylphenyl)amino]-4-oxidanylidene-butanoyl]amino]ethyl]-1,2,3-triazol-1-yl]ethylsulfamoyl]benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5LYH 
_cell.length_a            83.032 
_cell.length_b            83.032 
_cell.length_c            122.08 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 1618 1_555 A SG CYS 10 A CYS 1618 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
disulf ? disulf2 B SG CYS 10 B CYS 1618 1_555 B SG CYS 10 B CYS 1618 6_765 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C24 H27 N7 O7 S' 
_chem_comp.formula_weight    557.579 
_chem_comp.id                7B8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[4-[2-[[4-[(3-aminocarbonylphenyl)amino]-4-oxidanylidene-butanoyl]amino]ethyl]-1,2,3-triazol-1-yl]ethylsulfamoyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAF CAG 7B8 doub 1 n n 
CBA CBB 7B8 doub 2 n y 
CBA CAH 7B8 sing 3 n y 
CAG CAH 7B8 sing 4 n n 
CAG NAA 7B8 sing 5 n n 
CBB CBC 7B8 sing 6 n y 
CAH CAI 7B8 doub 7 n y 
CBC CAJ 7B8 doub 8 n y 
CAI CAJ 7B8 sing 9 n y 
CAJ NAK 7B8 sing 10 n n 
NAK CAL 7B8 sing 11 n n 
CAL OBD 7B8 doub 12 n n 
CAL CAM 7B8 sing 13 n n 
CAM CAN 7B8 sing 14 n n 
OBM CBL 7B8 doub 15 n n 
CAN CAO 7B8 sing 16 n n 
OBK CBL 7B8 sing 17 n n 
CBL CBI 7B8 sing 18 n n 
CAO NAP 7B8 sing 19 n n 
CAO OAB 7B8 doub 20 n n 
NAP CAQ 7B8 sing 21 n n 
CBI CBH 7B8 doub 22 n y 
CBI CBJ 7B8 sing 23 n y 
CBH CBE 7B8 sing 24 n y 
CAQ CAR 7B8 sing 25 n n 
CBJ CBG 7B8 doub 26 n y 
CBE CBF 7B8 doub 27 n y 
CAR CAS 7B8 sing 28 n n 
CBG CBF 7B8 sing 29 n y 
CBG SAY 7B8 sing 30 n n 
CAT CAS 7B8 doub 31 n y 
CAT NAU 7B8 sing 32 n y 
OAE SAY 7B8 doub 33 n n 
CAS NAC 7B8 sing 34 n y 
SAY OAZ 7B8 doub 35 n n 
SAY NAX 7B8 sing 36 n n 
CAW CAV 7B8 sing 37 n n 
CAW NAX 7B8 sing 38 n n 
NAU CAV 7B8 sing 39 n n 
NAU NAD 7B8 sing 40 n y 
NAC NAD 7B8 doub 41 n y 
OBK H1 7B8 sing 42 n n 
CBJ H2 7B8 sing 43 n n 
CBH H3 7B8 sing 44 n n 
CBE H4 7B8 sing 45 n n 
CBF H5 7B8 sing 46 n n 
NAX H6 7B8 sing 47 n n 
CAW H7 7B8 sing 48 n n 
CAW H8 7B8 sing 49 n n 
CAV H9 7B8 sing 50 n n 
CAV H10 7B8 sing 51 n n 
CAT H11 7B8 sing 52 n n 
CAR H12 7B8 sing 53 n n 
CAR H13 7B8 sing 54 n n 
CAQ H14 7B8 sing 55 n n 
CAQ H15 7B8 sing 56 n n 
NAP H16 7B8 sing 57 n n 
CAN H17 7B8 sing 58 n n 
CAN H18 7B8 sing 59 n n 
CAM H19 7B8 sing 60 n n 
CAM H20 7B8 sing 61 n n 
NAK H21 7B8 sing 62 n n 
CAI H22 7B8 sing 63 n n 
CBC H23 7B8 sing 64 n n 
CBB H24 7B8 sing 65 n n 
CBA H25 7B8 sing 66 n n 
NAA H26 7B8 sing 67 n n 
NAA H27 7B8 sing 68 n n 
#
_atom_sites.entry_id                     5LYH 
_atom_sites.fract_transf_matrix[1][1]    0.012044 
_atom_sites.fract_transf_matrix[1][2]    0.006953 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008191 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7B8 A 1 1901 2 7B8 DRG . 
D 2 7B8 B 1 1901 1 7B8 DRG . 
E 3 HOH A 1 2001 8 HOH HOH . 
E 3 HOH A 2 2002 2 HOH HOH . 
E 3 HOH A 3 2003 16 HOH HOH . 
E 3 HOH A 4 2004 7 HOH HOH . 
E 3 HOH A 5 2005 5 HOH HOH . 
E 3 HOH A 6 2006 17 HOH HOH . 
E 3 HOH A 7 2007 9 HOH HOH . 
E 3 HOH A 8 2008 18 HOH HOH . 
E 3 HOH A 9 2009 1 HOH HOH . 
E 3 HOH A 10 2010 4 HOH HOH . 
F 3 HOH B 1 2001 3 HOH HOH . 
F 3 HOH B 2 2002 15 HOH HOH . 
F 3 HOH B 3 2003 12 HOH HOH . 
F 3 HOH B 4 2004 6 HOH HOH . 
F 3 HOH B 5 2005 10 HOH HOH . 
F 3 HOH B 6 2006 14 HOH HOH . 
F 3 HOH B 7 2007 11 HOH HOH . 
F 3 HOH B 8 2008 19 HOH HOH . 
F 3 HOH B 9 2009 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OBK 7B8 . . . D 2 43.794 86.624 23.205 1 92.39 ? OBK 7B8 1901 B 1 
HETATM 2 C CBL 7B8 . . . D 2 43.952 87.823 23.494 1 83.97 ? CBL 7B8 1901 B 1 
HETATM 3 O OBM 7B8 . . . D 2 44.313 88.621 22.618 1 70.93 ? OBM 7B8 1901 B 1 
HETATM 4 C CBI 7B8 . . . D 2 43.737 88.27 24.782 1 86.48 ? CBI 7B8 1901 B 1 
HETATM 5 C CBJ 7B8 . . . D 2 44.191 87.538 25.873 1 102.45 ? CBJ 7B8 1901 B 1 
HETATM 6 C CBH 7B8 . . . D 2 43.074 89.468 24.99 1 91.43 ? CBH 7B8 1901 B 1 
HETATM 7 C CBE 7B8 . . . D 2 42.85 89.95 26.281 1 98.7 ? CBE 7B8 1901 B 1 
HETATM 8 C CBF 7B8 . . . D 2 43.297 89.224 27.381 1 100.62 ? CBF 7B8 1901 B 1 
HETATM 9 C CBG 7B8 . . . D 2 43.967 88.017 27.174 1 112.93 ? CBG 7B8 1901 B 1 
HETATM 10 S SAY 7B8 . . . D 2 44.538 87.116 28.559 1 124.26 ? SAY 7B8 1901 B 1 
HETATM 11 O OAZ 7B8 . . . D 2 43.339 86.63 29.384 1 122.53 ? OAZ 7B8 1901 B 1 
HETATM 12 O OAE 7B8 . . . D 2 45.344 85.904 28.072 1 132.23 ? OAE 7B8 1901 B 1 
HETATM 13 N NAX 7B8 . . . D 2 45.581 88.125 29.544 1 127.33 ? NAX 7B8 1901 B 1 
HETATM 14 C CAW 7B8 . . . D 2 46.417 89.067 28.768 1 126.73 ? CAW 7B8 1901 B 1 
HETATM 15 C CAV 7B8 . . . D 2 47.757 89.375 29.472 1 125.38 ? CAV 7B8 1901 B 1 
HETATM 16 N NAU 7B8 . . . D 2 48.829 88.384 29.143 1 120.88 ? NAU 7B8 1901 B 1 
HETATM 17 C CAT 7B8 . . . D 2 49.185 87.975 27.923 1 121.36 ? CAT 7B8 1901 B 1 
HETATM 18 N NAD 7B8 . . . D 2 49.567 87.798 29.997 1 114.73 ? NAD 7B8 1901 B 1 
HETATM 19 N NAC 7B8 . . . D 2 50.381 87.024 29.423 1 114.48 ? NAC 7B8 1901 B 1 
HETATM 20 C CAS 7B8 . . . D 2 50.175 87.109 28.108 1 115.87 ? CAS 7B8 1901 B 1 
HETATM 21 C CAR 7B8 . . . D 2 50.955 86.315 27.022 1 100.14 ? CAR 7B8 1901 B 1 
HETATM 22 C CAQ 7B8 . . . D 2 51.147 87.091 25.701 1 94.64 ? CAQ 7B8 1901 B 1 
HETATM 23 N NAP 7B8 . . . D 2 51.595 86.235 24.578 1 81.76 ? NAP 7B8 1901 B 1 
HETATM 24 C CAO 7B8 . . . D 2 52.863 85.767 24.47 1 85.03 ? CAO 7B8 1901 B 1 
HETATM 25 O OAB 7B8 . . . D 2 53.725 85.917 25.354 1 82.31 ? OAB 7B8 1901 B 1 
HETATM 26 C CAN 7B8 . . . D 2 53.165 84.913 23.186 1 69.49 ? CAN 7B8 1901 B 1 
HETATM 27 C CAM 7B8 . . . D 2 54.01 85.694 22.136 1 65.26 ? CAM 7B8 1901 B 1 
HETATM 28 C CAL 7B8 . . . D 2 53.171 86.606 21.218 1 62.53 ? CAL 7B8 1901 B 1 
HETATM 29 O OBD 7B8 . . . D 2 52.01 86.828 21.576 1 48.86 ? OBD 7B8 1901 B 1 
HETATM 30 N NAK 7B8 . . . D 2 53.81 87.072 20.042 1 55.08 ? NAK 7B8 1901 B 1 
HETATM 31 C CAJ 7B8 . . . D 2 53.216 87.998 19.206 1 53.03 ? CAJ 7B8 1901 B 1 
HETATM 32 C CAI 7B8 . . . D 2 51.869 88.034 18.868 1 50.21 ? CAI 7B8 1901 B 1 
HETATM 33 C CBC 7B8 . . . D 2 53.993 89.012 18.654 1 58.89 ? CBC 7B8 1901 B 1 
HETATM 34 C CBB 7B8 . . . D 2 53.444 90.018 17.837 1 57.75 ? CBB 7B8 1901 B 1 
HETATM 35 C CBA 7B8 . . . D 2 52.086 90.025 17.514 1 46.2 ? CBA 7B8 1901 B 1 
HETATM 36 C CAH 7B8 . . . D 2 51.275 89.016 18.025 1 48.36 ? CAH 7B8 1901 B 1 
HETATM 37 C CAG 7B8 . . . D 2 49.885 89.026 17.731 1 39.41 ? CAG 7B8 1901 B 1 
HETATM 38 O OAF 7B8 . . . D 2 49.361 89.712 16.809 1 40.86 ? OAF 7B8 1901 B 1 
HETATM 39 N NAA 7B8 . . . D 2 49.108 88.344 18.558 1 38.11 ? NAA 7B8 1901 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#