data_5LYK # _model_server_result.job_id Jm3PMe75QJ2sln6bT25dKg _model_server_result.datetime_utc '2024-11-05 01:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5LYK # _exptl.entry_id 5LYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LYK _cell.length_a 45.5 _cell.length_b 125.2 _cell.length_c 39.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 92 n n CAC OA1 FLC doub 93 n n CAC OA2 FLC sing 94 n n CA CB FLC sing 95 n n CA HA1 FLC sing 96 n n CA HA2 FLC sing 97 n n CB CBC FLC sing 98 n n CB CG FLC sing 99 n n CB OHB FLC sing 100 n n CBC OB1 FLC doub 101 n n CBC OB2 FLC sing 102 n n CG CGC FLC sing 103 n n CG HG1 FLC sing 104 n n CG HG2 FLC sing 105 n n CGC OG1 FLC doub 106 n n CGC OG2 FLC sing 107 n n OHB HOB FLC sing 108 n n # _atom_sites.entry_id 5LYK _atom_sites.fract_transf_matrix[1][1] 0.021978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 601 1 FLC FLC . C 3 EDO A 1 602 1 EDO EDO . D 4 HOH A 1 701 110 HOH HOH . D 4 HOH A 2 702 106 HOH HOH . D 4 HOH A 3 703 99 HOH HOH . D 4 HOH A 4 704 172 HOH HOH . D 4 HOH A 5 705 67 HOH HOH . D 4 HOH A 6 706 89 HOH HOH . D 4 HOH A 7 707 90 HOH HOH . D 4 HOH A 8 708 1 HOH HOH . D 4 HOH A 9 709 26 HOH HOH . D 4 HOH A 10 710 160 HOH HOH . D 4 HOH A 11 711 144 HOH HOH . D 4 HOH A 12 712 51 HOH HOH . D 4 HOH A 13 713 153 HOH HOH . D 4 HOH A 14 714 129 HOH HOH . D 4 HOH A 15 715 82 HOH HOH . D 4 HOH A 16 716 30 HOH HOH . D 4 HOH A 17 717 42 HOH HOH . D 4 HOH A 18 718 38 HOH HOH . D 4 HOH A 19 719 23 HOH HOH . D 4 HOH A 20 720 72 HOH HOH . D 4 HOH A 21 721 173 HOH HOH . D 4 HOH A 22 722 19 HOH HOH . D 4 HOH A 23 723 21 HOH HOH . D 4 HOH A 24 724 18 HOH HOH . D 4 HOH A 25 725 91 HOH HOH . D 4 HOH A 26 726 65 HOH HOH . D 4 HOH A 27 727 63 HOH HOH . D 4 HOH A 28 728 59 HOH HOH . D 4 HOH A 29 729 158 HOH HOH . D 4 HOH A 30 730 85 HOH HOH . D 4 HOH A 31 731 161 HOH HOH . D 4 HOH A 32 732 8 HOH HOH . D 4 HOH A 33 733 5 HOH HOH . D 4 HOH A 34 734 20 HOH HOH . D 4 HOH A 35 735 64 HOH HOH . D 4 HOH A 36 736 183 HOH HOH . D 4 HOH A 37 737 69 HOH HOH . D 4 HOH A 38 738 125 HOH HOH . D 4 HOH A 39 739 2 HOH HOH . D 4 HOH A 40 740 39 HOH HOH . D 4 HOH A 41 741 97 HOH HOH . D 4 HOH A 42 742 88 HOH HOH . D 4 HOH A 43 743 117 HOH HOH . D 4 HOH A 44 744 61 HOH HOH . D 4 HOH A 45 745 33 HOH HOH . D 4 HOH A 46 746 140 HOH HOH . D 4 HOH A 47 747 36 HOH HOH . D 4 HOH A 48 748 134 HOH HOH . D 4 HOH A 49 749 70 HOH HOH . D 4 HOH A 50 750 168 HOH HOH . D 4 HOH A 51 751 98 HOH HOH . D 4 HOH A 52 752 27 HOH HOH . D 4 HOH A 53 753 3 HOH HOH . D 4 HOH A 54 754 4 HOH HOH . D 4 HOH A 55 755 164 HOH HOH . D 4 HOH A 56 756 14 HOH HOH . D 4 HOH A 57 757 75 HOH HOH . D 4 HOH A 58 758 47 HOH HOH . D 4 HOH A 59 759 17 HOH HOH . D 4 HOH A 60 760 58 HOH HOH . D 4 HOH A 61 761 71 HOH HOH . D 4 HOH A 62 762 6 HOH HOH . D 4 HOH A 63 763 83 HOH HOH . D 4 HOH A 64 764 52 HOH HOH . D 4 HOH A 65 765 86 HOH HOH . D 4 HOH A 66 766 182 HOH HOH . D 4 HOH A 67 767 57 HOH HOH . D 4 HOH A 68 768 84 HOH HOH . D 4 HOH A 69 769 28 HOH HOH . D 4 HOH A 70 770 22 HOH HOH . D 4 HOH A 71 771 124 HOH HOH . D 4 HOH A 72 772 13 HOH HOH . D 4 HOH A 73 773 24 HOH HOH . D 4 HOH A 74 774 155 HOH HOH . D 4 HOH A 75 775 100 HOH HOH . D 4 HOH A 76 776 162 HOH HOH . D 4 HOH A 77 777 146 HOH HOH . D 4 HOH A 78 778 104 HOH HOH . D 4 HOH A 79 779 43 HOH HOH . D 4 HOH A 80 780 54 HOH HOH . D 4 HOH A 81 781 45 HOH HOH . D 4 HOH A 82 782 184 HOH HOH . D 4 HOH A 83 783 147 HOH HOH . D 4 HOH A 84 784 113 HOH HOH . D 4 HOH A 85 785 93 HOH HOH . D 4 HOH A 86 786 74 HOH HOH . D 4 HOH A 87 787 16 HOH HOH . D 4 HOH A 88 788 102 HOH HOH . D 4 HOH A 89 789 138 HOH HOH . D 4 HOH A 90 790 35 HOH HOH . D 4 HOH A 91 791 60 HOH HOH . D 4 HOH A 92 792 10 HOH HOH . D 4 HOH A 93 793 50 HOH HOH . D 4 HOH A 94 794 120 HOH HOH . D 4 HOH A 95 795 7 HOH HOH . D 4 HOH A 96 796 77 HOH HOH . D 4 HOH A 97 797 62 HOH HOH . D 4 HOH A 98 798 107 HOH HOH . D 4 HOH A 99 799 53 HOH HOH . D 4 HOH A 100 800 108 HOH HOH . D 4 HOH A 101 801 9 HOH HOH . D 4 HOH A 102 802 11 HOH HOH . D 4 HOH A 103 803 41 HOH HOH . D 4 HOH A 104 804 29 HOH HOH . D 4 HOH A 105 805 141 HOH HOH . D 4 HOH A 106 806 15 HOH HOH . D 4 HOH A 107 807 87 HOH HOH . D 4 HOH A 108 808 80 HOH HOH . D 4 HOH A 109 809 37 HOH HOH . D 4 HOH A 110 810 167 HOH HOH . D 4 HOH A 111 811 66 HOH HOH . D 4 HOH A 112 812 130 HOH HOH . D 4 HOH A 113 813 128 HOH HOH . D 4 HOH A 114 814 114 HOH HOH . D 4 HOH A 115 815 96 HOH HOH . D 4 HOH A 116 816 68 HOH HOH . D 4 HOH A 117 817 56 HOH HOH . D 4 HOH A 118 818 175 HOH HOH . D 4 HOH A 119 819 12 HOH HOH . D 4 HOH A 120 820 79 HOH HOH . D 4 HOH A 121 821 101 HOH HOH . D 4 HOH A 122 822 121 HOH HOH . D 4 HOH A 123 823 145 HOH HOH . D 4 HOH A 124 824 40 HOH HOH . D 4 HOH A 125 825 78 HOH HOH . D 4 HOH A 126 826 31 HOH HOH . D 4 HOH A 127 827 34 HOH HOH . D 4 HOH A 128 828 176 HOH HOH . D 4 HOH A 129 829 76 HOH HOH . D 4 HOH A 130 830 94 HOH HOH . D 4 HOH A 131 831 122 HOH HOH . D 4 HOH A 132 832 95 HOH HOH . D 4 HOH A 133 833 181 HOH HOH . D 4 HOH A 134 834 112 HOH HOH . D 4 HOH A 135 835 154 HOH HOH . D 4 HOH A 136 836 177 HOH HOH . D 4 HOH A 137 837 44 HOH HOH . D 4 HOH A 138 838 115 HOH HOH . D 4 HOH A 139 839 151 HOH HOH . D 4 HOH A 140 840 156 HOH HOH . D 4 HOH A 141 841 25 HOH HOH . D 4 HOH A 142 842 46 HOH HOH . D 4 HOH A 143 843 49 HOH HOH . D 4 HOH A 144 844 81 HOH HOH . D 4 HOH A 145 845 48 HOH HOH . D 4 HOH A 146 846 32 HOH HOH . D 4 HOH A 147 847 178 HOH HOH . D 4 HOH A 148 848 111 HOH HOH . D 4 HOH A 149 849 109 HOH HOH . D 4 HOH A 150 850 55 HOH HOH . D 4 HOH A 151 851 73 HOH HOH . D 4 HOH A 152 852 92 HOH HOH . D 4 HOH A 153 853 136 HOH HOH . D 4 HOH A 154 854 116 HOH HOH . D 4 HOH A 155 855 180 HOH HOH . D 4 HOH A 156 856 103 HOH HOH . D 4 HOH A 157 857 133 HOH HOH . D 4 HOH A 158 858 127 HOH HOH . D 4 HOH A 159 859 171 HOH HOH . D 4 HOH A 160 860 139 HOH HOH . D 4 HOH A 161 861 157 HOH HOH . D 4 HOH A 162 862 166 HOH HOH . D 4 HOH A 163 863 137 HOH HOH . D 4 HOH A 164 864 163 HOH HOH . D 4 HOH A 165 865 170 HOH HOH . D 4 HOH A 166 866 174 HOH HOH . D 4 HOH A 167 867 135 HOH HOH . D 4 HOH A 168 868 152 HOH HOH . D 4 HOH A 169 869 179 HOH HOH . D 4 HOH A 170 870 131 HOH HOH . D 4 HOH A 171 871 119 HOH HOH . D 4 HOH A 172 872 126 HOH HOH . D 4 HOH A 173 873 159 HOH HOH . D 4 HOH A 174 874 148 HOH HOH . D 4 HOH A 175 875 143 HOH HOH . D 4 HOH A 176 876 150 HOH HOH . D 4 HOH A 177 877 142 HOH HOH . D 4 HOH A 178 878 118 HOH HOH . D 4 HOH A 179 879 123 HOH HOH . D 4 HOH A 180 880 105 HOH HOH . D 4 HOH A 181 881 132 HOH HOH . D 4 HOH A 182 882 149 HOH HOH . D 4 HOH A 183 883 169 HOH HOH . D 4 HOH A 184 884 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . B 2 -23.156 23.358 20.27 1 22.71 ? CAC FLC 601 A 1 HETATM 2 C CA FLC . . . B 2 -23.366 22.817 21.674 1 21.83 ? CA FLC 601 A 1 HETATM 3 C CB FLC . . . B 2 -23.078 21.32 21.796 1 21.15 ? CB FLC 601 A 1 HETATM 4 C CBC FLC . . . B 2 -21.615 21.053 21.476 1 21.36 ? CBC FLC 601 A 1 HETATM 5 C CG FLC . . . B 2 -23.395 20.868 23.225 1 22.45 ? CG FLC 601 A 1 HETATM 6 C CGC FLC . . . B 2 -23.316 19.373 23.468 1 24.89 ? CGC FLC 601 A 1 HETATM 7 O OA1 FLC . . . B 2 -23.757 22.804 19.311 1 22.76 ? OA1 FLC 601 A 1 HETATM 8 O OA2 FLC . . . B 2 -22.388 24.347 20.139 1 22.9 ? OA2 FLC 601 A 1 HETATM 9 O OB1 FLC . . . B 2 -21.347 20.758 20.29 1 17.05 ? OB1 FLC 601 A 1 HETATM 10 O OB2 FLC . . . B 2 -20.739 21.138 22.398 1 22.41 ? OB2 FLC 601 A 1 HETATM 11 O OG1 FLC . . . B 2 -22.51 18.652 22.838 1 24.29 ? OG1 FLC 601 A 1 HETATM 12 O OG2 FLC . . . B 2 -24.077 18.904 24.342 1 26.75 ? OG2 FLC 601 A 1 HETATM 13 O OHB FLC . . . B 2 -23.914 20.602 20.859 1 20.26 ? OHB FLC 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #