data_5LYO # _model_server_result.job_id 2pYjPoDuR2jbhRUBikZWFg _model_server_result.datetime_utc '2025-07-19 12:49:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":908}' # _entry.id 5LYO # _exptl.entry_id 5LYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LYO _cell.length_a 109.17 _cell.length_b 109.17 _cell.length_c 124.468 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,Y 1 1 B,K,L,M,N,O,Z 2 1 C,P,Q,R,S,T,U,V,W,X,AA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 604 1_555 A SG CYS 141 A CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 51 A CYS 641 1_555 A SG CYS 67 A CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 186 A CYS 776 1_555 A SG CYS 200 A CYS 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 211 A CYS 801 1_555 A SG CYS 240 A CYS 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf5 B SG CYS 51 B CYS 641 1_555 B SG CYS 67 B CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 186 B CYS 776 1_555 B SG CYS 200 B CYS 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? disulf ? disulf7 B SG CYS 211 B CYS 801 1_555 B SG CYS 240 B CYS 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 C SG CYS 14 C CYS 604 1_555 C SG CYS 141 C CYS 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? disulf ? disulf9 C SG CYS 51 C CYS 641 1_555 C SG CYS 67 C CYS 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 C SG CYS 186 C CYS 776 1_555 C SG CYS 200 C CYS 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf11 C SG CYS 211 C CYS 801 1_555 C SG CYS 240 C CYS 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 5LYO _atom_sites.fract_transf_matrix[1][1] 0.00916 _atom_sites.fract_transf_matrix[1][2] 0.005289 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 901 1 SO4 SO4 . E 2 SO4 A 1 902 4 SO4 SO4 . F 2 SO4 A 1 903 5 SO4 SO4 . G 2 SO4 A 1 904 6 SO4 SO4 . H 2 SO4 A 1 905 15 SO4 SO4 . I 2 SO4 A 1 906 16 SO4 SO4 . J 2 SO4 A 1 907 24 SO4 SO4 . K 2 SO4 B 1 901 2 SO4 SO4 . L 2 SO4 B 1 902 7 SO4 SO4 . M 2 SO4 B 1 903 8 SO4 SO4 . N 2 SO4 B 1 904 9 SO4 SO4 . O 2 SO4 B 1 905 22 SO4 SO4 . P 2 SO4 C 1 901 3 SO4 SO4 . Q 2 SO4 C 1 902 10 SO4 SO4 . R 2 SO4 C 1 903 11 SO4 SO4 . S 2 SO4 C 1 904 12 SO4 SO4 . T 2 SO4 C 1 905 13 SO4 SO4 . U 2 SO4 C 1 906 14 SO4 SO4 . V 2 SO4 C 1 907 20 SO4 SO4 . W 2 SO4 C 1 908 23 SO4 SO4 . X 2 SO4 C 1 909 25 SO4 SO4 . Y 3 HOH A 1 1001 250 HOH HOH . Y 3 HOH A 2 1002 255 HOH HOH . Y 3 HOH A 3 1003 36 HOH HOH . Y 3 HOH A 4 1004 162 HOH HOH . Y 3 HOH A 5 1005 33 HOH HOH . Y 3 HOH A 6 1006 52 HOH HOH . Y 3 HOH A 7 1007 40 HOH HOH . Y 3 HOH A 8 1008 116 HOH HOH . Y 3 HOH A 9 1009 37 HOH HOH . Y 3 HOH A 10 1010 54 HOH HOH . Y 3 HOH A 11 1011 29 HOH HOH . Y 3 HOH A 12 1012 256 HOH HOH . Y 3 HOH A 13 1013 179 HOH HOH . Y 3 HOH A 14 1014 41 HOH HOH . Y 3 HOH A 15 1015 181 HOH HOH . Y 3 HOH A 16 1016 25 HOH HOH . Y 3 HOH A 17 1017 27 HOH HOH . Y 3 HOH A 18 1018 45 HOH HOH . Y 3 HOH A 19 1019 47 HOH HOH . Y 3 HOH A 20 1020 121 HOH HOH . Y 3 HOH A 21 1021 46 HOH HOH . Y 3 HOH A 22 1022 39 HOH HOH . Y 3 HOH A 23 1023 28 HOH HOH . Y 3 HOH A 24 1024 108 HOH HOH . Y 3 HOH A 25 1025 106 HOH HOH . Y 3 HOH A 26 1026 231 HOH HOH . Y 3 HOH A 27 1027 107 HOH HOH . Y 3 HOH A 28 1028 48 HOH HOH . Y 3 HOH A 29 1029 56 HOH HOH . Y 3 HOH A 30 1030 117 HOH HOH . Y 3 HOH A 31 1031 51 HOH HOH . Y 3 HOH A 32 1032 158 HOH HOH . Y 3 HOH A 33 1033 119 HOH HOH . Y 3 HOH A 34 1034 23 HOH HOH . Y 3 HOH A 35 1035 230 HOH HOH . Y 3 HOH A 36 1036 173 HOH HOH . Y 3 HOH A 37 1037 50 HOH HOH . Y 3 HOH A 38 1038 22 HOH HOH . Y 3 HOH A 39 1039 95 HOH HOH . Y 3 HOH A 40 1040 233 HOH HOH . Y 3 HOH A 41 1041 31 HOH HOH . Y 3 HOH A 42 1042 42 HOH HOH . Y 3 HOH A 43 1043 100 HOH HOH . Y 3 HOH A 44 1044 150 HOH HOH . Y 3 HOH A 45 1045 182 HOH HOH . Y 3 HOH A 46 1046 160 HOH HOH . Y 3 HOH A 47 1047 57 HOH HOH . Y 3 HOH A 48 1048 161 HOH HOH . Y 3 HOH A 49 1049 224 HOH HOH . Y 3 HOH A 50 1050 204 HOH HOH . Y 3 HOH A 51 1051 178 HOH HOH . Y 3 HOH A 52 1052 257 HOH HOH . Y 3 HOH A 53 1053 114 HOH HOH . Y 3 HOH A 54 1054 53 HOH HOH . Y 3 HOH A 55 1055 118 HOH HOH . Z 3 HOH B 1 1001 249 HOH HOH . Z 3 HOH B 2 1002 112 HOH HOH . Z 3 HOH B 3 1003 211 HOH HOH . Z 3 HOH B 4 1004 229 HOH HOH . Z 3 HOH B 5 1005 205 HOH HOH . Z 3 HOH B 6 1006 74 HOH HOH . Z 3 HOH B 7 1007 67 HOH HOH . Z 3 HOH B 8 1008 61 HOH HOH . Z 3 HOH B 9 1009 126 HOH HOH . Z 3 HOH B 10 1010 111 HOH HOH . Z 3 HOH B 11 1011 78 HOH HOH . Z 3 HOH B 12 1012 166 HOH HOH . Z 3 HOH B 13 1013 253 HOH HOH . Z 3 HOH B 14 1014 66 HOH HOH . Z 3 HOH B 15 1015 70 HOH HOH . Z 3 HOH B 16 1016 258 HOH HOH . Z 3 HOH B 17 1017 62 HOH HOH . Z 3 HOH B 18 1018 237 HOH HOH . Z 3 HOH B 19 1019 63 HOH HOH . Z 3 HOH B 20 1020 65 HOH HOH . Z 3 HOH B 21 1021 77 HOH HOH . Z 3 HOH B 22 1022 130 HOH HOH . Z 3 HOH B 23 1023 82 HOH HOH . Z 3 HOH B 24 1024 191 HOH HOH . Z 3 HOH B 25 1025 151 HOH HOH . Z 3 HOH B 26 1026 262 HOH HOH . Z 3 HOH B 27 1027 99 HOH HOH . Z 3 HOH B 28 1028 128 HOH HOH . Z 3 HOH B 29 1029 195 HOH HOH . Z 3 HOH B 30 1030 125 HOH HOH . Z 3 HOH B 31 1031 109 HOH HOH . Z 3 HOH B 32 1032 68 HOH HOH . Z 3 HOH B 33 1033 210 HOH HOH . Z 3 HOH B 34 1034 263 HOH HOH . Z 3 HOH B 35 1035 132 HOH HOH . Z 3 HOH B 36 1036 124 HOH HOH . Z 3 HOH B 37 1037 225 HOH HOH . Z 3 HOH B 38 1038 167 HOH HOH . Z 3 HOH B 39 1039 259 HOH HOH . Z 3 HOH B 40 1040 69 HOH HOH . Z 3 HOH B 41 1041 234 HOH HOH . Z 3 HOH B 42 1042 110 HOH HOH . Z 3 HOH B 43 1043 168 HOH HOH . Z 3 HOH B 44 1044 133 HOH HOH . Z 3 HOH B 45 1045 72 HOH HOH . Z 3 HOH B 46 1046 232 HOH HOH . Z 3 HOH B 47 1047 58 HOH HOH . Z 3 HOH B 48 1048 64 HOH HOH . Z 3 HOH B 49 1049 235 HOH HOH . Z 3 HOH B 50 1050 265 HOH HOH . Z 3 HOH B 51 1051 216 HOH HOH . Z 3 HOH B 52 1052 186 HOH HOH . Z 3 HOH B 53 1053 80 HOH HOH . Z 3 HOH B 54 1054 83 HOH HOH . Z 3 HOH B 55 1055 122 HOH HOH . Z 3 HOH B 56 1056 187 HOH HOH . Z 3 HOH B 57 1057 169 HOH HOH . Z 3 HOH B 58 1058 236 HOH HOH . Z 3 HOH B 59 1059 201 HOH HOH . Z 3 HOH B 60 1060 79 HOH HOH . AA 3 HOH C 1 1001 10 HOH HOH . AA 3 HOH C 2 1002 143 HOH HOH . AA 3 HOH C 3 1003 248 HOH HOH . AA 3 HOH C 4 1004 14 HOH HOH . AA 3 HOH C 5 1005 244 HOH HOH . AA 3 HOH C 6 1006 153 HOH HOH . AA 3 HOH C 7 1007 93 HOH HOH . AA 3 HOH C 8 1008 212 HOH HOH . AA 3 HOH C 9 1009 189 HOH HOH . AA 3 HOH C 10 1010 247 HOH HOH . AA 3 HOH C 11 1011 11 HOH HOH . AA 3 HOH C 12 1012 246 HOH HOH . AA 3 HOH C 13 1013 245 HOH HOH . AA 3 HOH C 14 1014 220 HOH HOH . AA 3 HOH C 15 1015 91 HOH HOH . AA 3 HOH C 16 1016 8 HOH HOH . AA 3 HOH C 17 1017 3 HOH HOH . AA 3 HOH C 18 1018 20 HOH HOH . AA 3 HOH C 19 1019 92 HOH HOH . AA 3 HOH C 20 1020 219 HOH HOH . AA 3 HOH C 21 1021 194 HOH HOH . AA 3 HOH C 22 1022 2 HOH HOH . AA 3 HOH C 23 1023 251 HOH HOH . AA 3 HOH C 24 1024 242 HOH HOH . AA 3 HOH C 25 1025 140 HOH HOH . AA 3 HOH C 26 1026 213 HOH HOH . AA 3 HOH C 27 1027 15 HOH HOH . AA 3 HOH C 28 1028 13 HOH HOH . AA 3 HOH C 29 1029 252 HOH HOH . AA 3 HOH C 30 1030 94 HOH HOH . AA 3 HOH C 31 1031 142 HOH HOH . AA 3 HOH C 32 1032 144 HOH HOH . AA 3 HOH C 33 1033 12 HOH HOH . AA 3 HOH C 34 1034 206 HOH HOH . AA 3 HOH C 35 1035 149 HOH HOH . AA 3 HOH C 36 1036 145 HOH HOH . AA 3 HOH C 37 1037 240 HOH HOH . AA 3 HOH C 38 1038 85 HOH HOH . AA 3 HOH C 39 1039 254 HOH HOH . AA 3 HOH C 40 1040 264 HOH HOH . AA 3 HOH C 41 1041 21 HOH HOH . AA 3 HOH C 42 1042 17 HOH HOH . AA 3 HOH C 43 1043 87 HOH HOH . AA 3 HOH C 44 1044 243 HOH HOH . AA 3 HOH C 45 1045 7 HOH HOH . AA 3 HOH C 46 1046 147 HOH HOH . AA 3 HOH C 47 1047 154 HOH HOH . AA 3 HOH C 48 1048 241 HOH HOH . AA 3 HOH C 49 1049 89 HOH HOH . AA 3 HOH C 50 1050 238 HOH HOH . AA 3 HOH C 51 1051 239 HOH HOH . AA 3 HOH C 52 1052 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . W 2 12.828 -34.78 2.277 1 120.79 ? S SO4 908 C 1 HETATM 2 O O1 SO4 . . . W 2 14.023 -34.47 1.499 1 120.94 ? O1 SO4 908 C 1 HETATM 3 O O2 SO4 . . . W 2 11.69 -34.955 1.378 1 119.61 ? O2 SO4 908 C 1 HETATM 4 O O3 SO4 . . . W 2 13.048 -36.011 3.031 1 120.02 ? O3 SO4 908 C 1 HETATM 5 O O4 SO4 . . . W 2 12.551 -33.683 3.201 1 119.55 ? O4 SO4 908 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #