data_5LYQ # _model_server_result.job_id id9PalG2tPQShspdHgJ84Q _model_server_result.datetime_utc '2024-11-17 07:56:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5LYQ # _exptl.entry_id 5LYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.514 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2~{R})-6,6,9,9-tetramethylspiro[3,4,7,8-tetrahydrobenzo[g]chromene-2,2'-3,4-dihydrochromene]-6'-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5LYQ _cell.length_a 64.632 _cell.length_b 64.632 _cell.length_c 113.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -56.6035 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 O4' _chem_comp.formula_weight 406.514 _chem_comp.id 7BE _chem_comp.mon_nstd_flag . _chem_comp.name "(2~{R})-6,6,9,9-tetramethylspiro[3,4,7,8-tetrahydrobenzo[g]chromene-2,2'-3,4-dihydrochromene]-6'-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 7BE sing 1 n n C05 C06 7BE sing 2 n n C07 C06 7BE sing 3 n n C04 C02 7BE sing 4 n n C08 C06 7BE sing 5 n n C06 C09 7BE sing 6 n n C01 C02 7BE sing 7 n n C02 C03 7BE sing 8 n n C02 C30 7BE sing 9 n n C09 C30 7BE doub 10 n y C09 C10 7BE sing 11 n y C30 C29 7BE sing 12 n y C10 C11 7BE doub 13 n y C29 C28 7BE doub 14 n y C11 C28 7BE sing 15 n y C11 O12 7BE sing 16 n n O21 C19 7BE doub 17 n n C28 C27 7BE sing 18 n n C19 O20 7BE sing 19 n n C19 C18 7BE sing 20 n n O12 C13 7BE sing 21 n n C22 C18 7BE doub 22 n y C22 C23 7BE sing 23 n y C18 C17 7BE sing 24 n y C23 C24 7BE doub 25 n y C17 C16 7BE doub 26 n y C24 C16 7BE sing 27 n y C24 O25 7BE sing 28 n n C16 C15 7BE sing 29 n n O25 C13 7BE sing 30 n n C27 C26 7BE sing 31 n n C13 C26 7BE sing 32 n n C13 C14 7BE sing 33 n n C15 C14 7BE sing 34 n n C10 H1 7BE sing 35 n n C14 H2 7BE sing 36 n n C14 H3 7BE sing 37 n n C15 H4 7BE sing 38 n n C15 H5 7BE sing 39 n n C17 H6 7BE sing 40 n n C22 H7 7BE sing 41 n n C23 H8 7BE sing 42 n n C26 H9 7BE sing 43 n n C26 H10 7BE sing 44 n n C27 H11 7BE sing 45 n n C27 H12 7BE sing 46 n n C29 H13 7BE sing 47 n n C01 H14 7BE sing 48 n n C01 H15 7BE sing 49 n n C01 H16 7BE sing 50 n n C03 H17 7BE sing 51 n n C03 H18 7BE sing 52 n n C03 H19 7BE sing 53 n n C04 H20 7BE sing 54 n n C04 H21 7BE sing 55 n n C05 H22 7BE sing 56 n n C05 H23 7BE sing 57 n n C07 H24 7BE sing 58 n n C07 H25 7BE sing 59 n n C07 H26 7BE sing 60 n n C08 H27 7BE sing 61 n n C08 H28 7BE sing 62 n n C08 H29 7BE sing 63 n n O20 H30 7BE sing 64 n n # _atom_sites.entry_id 5LYQ _atom_sites.fract_transf_matrix[1][1] 0.015472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7BE A 1 501 1 7BE SP2 . D 4 HOH A 1 601 113 HOH HOH . D 4 HOH A 2 602 124 HOH HOH . D 4 HOH A 3 603 104 HOH HOH . D 4 HOH A 4 604 117 HOH HOH . D 4 HOH A 5 605 100 HOH HOH . D 4 HOH A 6 606 139 HOH HOH . D 4 HOH A 7 607 156 HOH HOH . D 4 HOH A 8 608 148 HOH HOH . D 4 HOH A 9 609 81 HOH HOH . D 4 HOH A 10 610 5 HOH HOH . D 4 HOH A 11 611 147 HOH HOH . D 4 HOH A 12 612 121 HOH HOH . D 4 HOH A 13 613 52 HOH HOH . D 4 HOH A 14 614 9 HOH HOH . D 4 HOH A 15 615 126 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 92 HOH HOH . D 4 HOH A 18 618 114 HOH HOH . D 4 HOH A 19 619 164 HOH HOH . D 4 HOH A 20 620 37 HOH HOH . D 4 HOH A 21 621 79 HOH HOH . D 4 HOH A 22 622 115 HOH HOH . D 4 HOH A 23 623 112 HOH HOH . D 4 HOH A 24 624 28 HOH HOH . D 4 HOH A 25 625 61 HOH HOH . D 4 HOH A 26 626 55 HOH HOH . D 4 HOH A 27 627 56 HOH HOH . D 4 HOH A 28 628 18 HOH HOH . D 4 HOH A 29 629 116 HOH HOH . D 4 HOH A 30 630 13 HOH HOH . D 4 HOH A 31 631 64 HOH HOH . D 4 HOH A 32 632 50 HOH HOH . D 4 HOH A 33 633 158 HOH HOH . D 4 HOH A 34 634 87 HOH HOH . D 4 HOH A 35 635 152 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 21 HOH HOH . D 4 HOH A 38 638 4 HOH HOH . D 4 HOH A 39 639 15 HOH HOH . D 4 HOH A 40 640 1 HOH HOH . D 4 HOH A 41 641 63 HOH HOH . D 4 HOH A 42 642 7 HOH HOH . D 4 HOH A 43 643 97 HOH HOH . D 4 HOH A 44 644 41 HOH HOH . D 4 HOH A 45 645 146 HOH HOH . D 4 HOH A 46 646 12 HOH HOH . D 4 HOH A 47 647 130 HOH HOH . D 4 HOH A 48 648 27 HOH HOH . D 4 HOH A 49 649 25 HOH HOH . D 4 HOH A 50 650 39 HOH HOH . D 4 HOH A 51 651 20 HOH HOH . D 4 HOH A 52 652 62 HOH HOH . D 4 HOH A 53 653 91 HOH HOH . D 4 HOH A 54 654 44 HOH HOH . D 4 HOH A 55 655 23 HOH HOH . D 4 HOH A 56 656 19 HOH HOH . D 4 HOH A 57 657 38 HOH HOH . D 4 HOH A 58 658 75 HOH HOH . D 4 HOH A 59 659 82 HOH HOH . D 4 HOH A 60 660 35 HOH HOH . D 4 HOH A 61 661 133 HOH HOH . D 4 HOH A 62 662 109 HOH HOH . D 4 HOH A 63 663 101 HOH HOH . D 4 HOH A 64 664 86 HOH HOH . D 4 HOH A 65 665 6 HOH HOH . D 4 HOH A 66 666 132 HOH HOH . D 4 HOH A 67 667 96 HOH HOH . D 4 HOH A 68 668 134 HOH HOH . D 4 HOH A 69 669 57 HOH HOH . D 4 HOH A 70 670 10 HOH HOH . D 4 HOH A 71 671 110 HOH HOH . D 4 HOH A 72 672 22 HOH HOH . D 4 HOH A 73 673 3 HOH HOH . D 4 HOH A 74 674 47 HOH HOH . D 4 HOH A 75 675 14 HOH HOH . D 4 HOH A 76 676 51 HOH HOH . D 4 HOH A 77 677 29 HOH HOH . D 4 HOH A 78 678 145 HOH HOH . D 4 HOH A 79 679 26 HOH HOH . D 4 HOH A 80 680 128 HOH HOH . D 4 HOH A 81 681 58 HOH HOH . D 4 HOH A 82 682 34 HOH HOH . D 4 HOH A 83 683 60 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . D 4 HOH A 85 685 40 HOH HOH . D 4 HOH A 86 686 138 HOH HOH . D 4 HOH A 87 687 107 HOH HOH . D 4 HOH A 88 688 11 HOH HOH . D 4 HOH A 89 689 123 HOH HOH . D 4 HOH A 90 690 85 HOH HOH . D 4 HOH A 91 691 31 HOH HOH . D 4 HOH A 92 692 80 HOH HOH . D 4 HOH A 93 693 53 HOH HOH . D 4 HOH A 94 694 105 HOH HOH . D 4 HOH A 95 695 74 HOH HOH . D 4 HOH A 96 696 111 HOH HOH . D 4 HOH A 97 697 144 HOH HOH . D 4 HOH A 98 698 142 HOH HOH . D 4 HOH A 99 699 137 HOH HOH . D 4 HOH A 100 700 45 HOH HOH . D 4 HOH A 101 701 66 HOH HOH . D 4 HOH A 102 702 120 HOH HOH . D 4 HOH A 103 703 155 HOH HOH . D 4 HOH A 104 704 150 HOH HOH . D 4 HOH A 105 705 143 HOH HOH . D 4 HOH A 106 706 129 HOH HOH . D 4 HOH A 107 707 46 HOH HOH . D 4 HOH A 108 708 68 HOH HOH . D 4 HOH A 109 709 159 HOH HOH . D 4 HOH A 110 710 94 HOH HOH . D 4 HOH A 111 711 88 HOH HOH . D 4 HOH A 112 712 8 HOH HOH . D 4 HOH A 113 713 163 HOH HOH . D 4 HOH A 114 714 72 HOH HOH . D 4 HOH A 115 715 2 HOH HOH . D 4 HOH A 116 716 70 HOH HOH . D 4 HOH A 117 717 99 HOH HOH . D 4 HOH A 118 718 106 HOH HOH . D 4 HOH A 119 719 165 HOH HOH . D 4 HOH A 120 720 108 HOH HOH . D 4 HOH A 121 721 32 HOH HOH . D 4 HOH A 122 722 59 HOH HOH . D 4 HOH A 123 723 83 HOH HOH . D 4 HOH A 124 724 89 HOH HOH . D 4 HOH A 125 725 33 HOH HOH . D 4 HOH A 126 726 54 HOH HOH . D 4 HOH A 127 727 30 HOH HOH . D 4 HOH A 128 728 160 HOH HOH . D 4 HOH A 129 729 24 HOH HOH . D 4 HOH A 130 730 73 HOH HOH . D 4 HOH A 131 731 77 HOH HOH . D 4 HOH A 132 732 76 HOH HOH . D 4 HOH A 133 733 49 HOH HOH . D 4 HOH A 134 734 71 HOH HOH . D 4 HOH A 135 735 17 HOH HOH . D 4 HOH A 136 736 157 HOH HOH . D 4 HOH A 137 737 102 HOH HOH . D 4 HOH A 138 738 127 HOH HOH . D 4 HOH A 139 739 162 HOH HOH . D 4 HOH A 140 740 119 HOH HOH . D 4 HOH A 141 741 42 HOH HOH . D 4 HOH A 142 742 141 HOH HOH . D 4 HOH A 143 743 43 HOH HOH . D 4 HOH A 144 744 131 HOH HOH . D 4 HOH A 145 745 125 HOH HOH . D 4 HOH A 146 746 151 HOH HOH . D 4 HOH A 147 747 95 HOH HOH . D 4 HOH A 148 748 118 HOH HOH . D 4 HOH A 149 749 154 HOH HOH . D 4 HOH A 150 750 135 HOH HOH . D 4 HOH A 151 751 153 HOH HOH . D 4 HOH A 152 752 166 HOH HOH . D 4 HOH A 153 753 93 HOH HOH . D 4 HOH A 154 754 78 HOH HOH . D 4 HOH A 155 755 65 HOH HOH . D 4 HOH A 156 756 67 HOH HOH . D 4 HOH A 157 757 136 HOH HOH . D 4 HOH A 158 758 161 HOH HOH . D 4 HOH A 159 759 149 HOH HOH . E 4 HOH B 1 501 122 HOH HOH . E 4 HOH B 2 502 48 HOH HOH . E 4 HOH B 3 503 103 HOH HOH . E 4 HOH B 4 504 140 HOH HOH . E 4 HOH B 5 505 90 HOH HOH . E 4 HOH B 6 506 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7BE . . . C 3 -17.487 -2.323 -32.519 1 28.94 ? C10 7BE 501 A 1 HETATM 2 C C11 7BE . . . C 3 -17.92 -2.318 -31.189 1 29.71 ? C11 7BE 501 A 1 HETATM 3 C C13 7BE . . . C 3 -18.059 -3.508 -29.076 1 30.31 ? C13 7BE 501 A 1 HETATM 4 C C14 7BE . . . C 3 -17.086 -4.266 -28.192 1 31.04 ? C14 7BE 501 A 1 HETATM 5 C C15 7BE . . . C 3 -16.66 -5.508 -28.915 1 31.67 ? C15 7BE 501 A 1 HETATM 6 C C16 7BE . . . C 3 -17.914 -6.29 -29.386 1 31.81 ? C16 7BE 501 A 1 HETATM 7 C C17 7BE . . . C 3 -17.821 -7.661 -29.617 1 31.84 ? C17 7BE 501 A 1 HETATM 8 C C18 7BE . . . C 3 -18.949 -8.362 -30.034 1 31.49 ? C18 7BE 501 A 1 HETATM 9 C C19 7BE . . . C 3 -18.862 -9.857 -30.294 1 30.6 ? C19 7BE 501 A 1 HETATM 10 C C22 7BE . . . C 3 -20.169 -7.706 -30.221 1 32.1 ? C22 7BE 501 A 1 HETATM 11 C C23 7BE . . . C 3 -20.256 -6.341 -29.993 1 32.28 ? C23 7BE 501 A 1 HETATM 12 C C24 7BE . . . C 3 -19.13 -5.629 -29.571 1 31.7 ? C24 7BE 501 A 1 HETATM 13 C C26 7BE . . . C 3 -18.458 -2.217 -28.385 1 30.12 ? C26 7BE 501 A 1 HETATM 14 C C27 7BE . . . C 3 -19.326 -1.362 -29.263 1 30.92 ? C27 7BE 501 A 1 HETATM 15 C C28 7BE . . . C 3 -18.853 -1.372 -30.741 1 30.02 ? C28 7BE 501 A 1 HETATM 16 C C29 7BE . . . C 3 -19.342 -0.41 -31.631 1 29.61 ? C29 7BE 501 A 1 HETATM 17 C C30 7BE . . . C 3 -18.905 -0.414 -32.975 1 29.37 ? C30 7BE 501 A 1 HETATM 18 C C01 7BE . . . C 3 -20.98 0.415 -34.112 1 30.15 ? C01 7BE 501 A 1 HETATM 19 C C02 7BE . . . C 3 -19.485 0.675 -33.92 1 30.06 ? C02 7BE 501 A 1 HETATM 20 C C03 7BE . . . C 3 -19.29 2.034 -33.253 1 29.83 ? C03 7BE 501 A 1 HETATM 21 C C04 7BE . . . C 3 -18.796 0.716 -35.307 1 29.99 ? C04 7BE 501 A 1 HETATM 22 C C05 7BE . . . C 3 -18.396 -0.674 -35.822 1 30.64 ? C05 7BE 501 A 1 HETATM 23 C C06 7BE . . . C 3 -17.485 -1.407 -34.853 1 30.52 ? C06 7BE 501 A 1 HETATM 24 C C07 7BE . . . C 3 -17.367 -2.865 -35.288 1 30.82 ? C07 7BE 501 A 1 HETATM 25 C C08 7BE . . . C 3 -16.099 -0.773 -34.914 1 30.74 ? C08 7BE 501 A 1 HETATM 26 C C09 7BE . . . C 3 -17.989 -1.36 -33.415 1 29.53 ? C09 7BE 501 A 1 HETATM 27 O O12 7BE . . . C 3 -17.376 -3.333 -30.319 1 29.67 ? O12 7BE 501 A 1 HETATM 28 O O20 7BE . . . C 3 -17.831 -10.494 -29.951 1 30.71 ? O20 7BE 501 A 1 HETATM 29 O O21 7BE . . . C 3 -19.822 -10.438 -30.858 1 30.54 ? O21 7BE 501 A 1 HETATM 30 O O25 7BE . . . C 3 -19.26 -4.21 -29.338 1 31.01 ? O25 7BE 501 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #