data_5LZ8 # _model_server_result.job_id DVd-PtnvsXDdHPVmFmaTyA _model_server_result.datetime_utc '2024-11-09 01:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5LZ8 # _exptl.entry_id 5LZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.359 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-[(4~{S})-4-~{tert}-butyl-2-oxidanylidene-pyrrolidin-1-yl]ethoxy]-2-fluoranyl-benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.81 _cell.angle_gamma 90 _cell.entry_id 5LZ8 _cell.length_a 99.768 _cell.length_b 91.276 _cell.length_c 48.106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 F N2 O2' _chem_comp.formula_weight 304.359 _chem_comp.id 7BP _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-[(4~{S})-4-~{tert}-butyl-2-oxidanylidene-pyrrolidin-1-yl]ethoxy]-2-fluoranyl-benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F16 C15 7BP sing 1 n n C14 C15 7BP doub 2 n y C14 C13 7BP sing 3 n y C15 C17 7BP sing 4 n y C13 C12 7BP doub 5 n y C17 C18 7BP sing 6 n n C17 C20 7BP doub 7 n y C4 C2 7BP sing 8 n n C12 C20 7BP sing 9 n y C12 O11 7BP sing 10 n n C1 C2 7BP sing 11 n n C5 C23 7BP sing 12 n n C5 C2 7BP sing 13 n n C5 C7 7BP sing 14 n n C18 N19 7BP trip 15 n n C10 O11 7BP sing 16 n n C10 C9 7BP sing 17 n n C23 C21 7BP sing 18 n n C2 C3 7BP sing 19 n n O22 C21 7BP doub 20 n n C21 N8 7BP sing 21 n n C7 N8 7BP sing 22 n n N8 C9 7BP sing 23 n n C1 H24 7BP sing 24 n n C1 H25 7BP sing 25 n n C1 H26 7BP sing 26 n n C3 H29 7BP sing 27 n n C3 H27 7BP sing 28 n n C3 H28 7BP sing 29 n n C5 H6 7BP sing 30 n n C7 H33 7BP sing 31 n n C7 H34 7BP sing 32 n n C10 H38 7BP sing 33 n n C10 H37 7BP sing 34 n n C13 H39 7BP sing 35 n n C14 H40 7BP sing 36 n n C23 H42 7BP sing 37 n n C23 H43 7BP sing 38 n n C4 H30 7BP sing 39 n n C4 H31 7BP sing 40 n n C4 H32 7BP sing 41 n n C9 H36 7BP sing 42 n n C9 H35 7BP sing 43 n n C20 H41 7BP sing 44 n n # _atom_sites.entry_id 5LZ8 _atom_sites.fract_transf_matrix[1][1] 0.010023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004216 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 501 194 CL CL . C 2 CL A 1 502 195 CL CL . D 3 7BP A 1 503 1 7BP L01 . E 4 HOH A 1 601 280 HOH HOH . E 4 HOH A 2 602 265 HOH HOH . E 4 HOH A 3 603 329 HOH HOH . E 4 HOH A 4 604 376 HOH HOH . E 4 HOH A 5 605 208 HOH HOH . E 4 HOH A 6 606 292 HOH HOH . E 4 HOH A 7 607 247 HOH HOH . E 4 HOH A 8 608 263 HOH HOH . E 4 HOH A 9 609 366 HOH HOH . E 4 HOH A 10 610 361 HOH HOH . E 4 HOH A 11 611 289 HOH HOH . E 4 HOH A 12 612 319 HOH HOH . E 4 HOH A 13 613 237 HOH HOH . E 4 HOH A 14 614 269 HOH HOH . E 4 HOH A 15 615 295 HOH HOH . E 4 HOH A 16 616 360 HOH HOH . E 4 HOH A 17 617 250 HOH HOH . E 4 HOH A 18 618 320 HOH HOH . E 4 HOH A 19 619 205 HOH HOH . E 4 HOH A 20 620 282 HOH HOH . E 4 HOH A 21 621 219 HOH HOH . E 4 HOH A 22 622 235 HOH HOH . E 4 HOH A 23 623 196 HOH HOH . E 4 HOH A 24 624 291 HOH HOH . E 4 HOH A 25 625 206 HOH HOH . E 4 HOH A 26 626 348 HOH HOH . E 4 HOH A 27 627 306 HOH HOH . E 4 HOH A 28 628 244 HOH HOH . E 4 HOH A 29 629 253 HOH HOH . E 4 HOH A 30 630 4 HOH HOH . E 4 HOH A 31 631 281 HOH HOH . E 4 HOH A 32 632 377 HOH HOH . E 4 HOH A 33 633 283 HOH HOH . E 4 HOH A 34 634 262 HOH HOH . E 4 HOH A 35 635 213 HOH HOH . E 4 HOH A 36 636 267 HOH HOH . E 4 HOH A 37 637 340 HOH HOH . E 4 HOH A 38 638 204 HOH HOH . E 4 HOH A 39 639 1 HOH HOH . E 4 HOH A 40 640 210 HOH HOH . E 4 HOH A 41 641 293 HOH HOH . E 4 HOH A 42 642 342 HOH HOH . E 4 HOH A 43 643 241 HOH HOH . E 4 HOH A 44 644 271 HOH HOH . E 4 HOH A 45 645 294 HOH HOH . E 4 HOH A 46 646 305 HOH HOH . E 4 HOH A 47 647 200 HOH HOH . E 4 HOH A 48 648 266 HOH HOH . E 4 HOH A 49 649 218 HOH HOH . E 4 HOH A 50 650 317 HOH HOH . E 4 HOH A 51 651 355 HOH HOH . E 4 HOH A 52 652 240 HOH HOH . E 4 HOH A 53 653 312 HOH HOH . E 4 HOH A 54 654 287 HOH HOH . E 4 HOH A 55 655 285 HOH HOH . E 4 HOH A 56 656 324 HOH HOH . E 4 HOH A 57 657 311 HOH HOH . E 4 HOH A 58 658 239 HOH HOH . E 4 HOH A 59 659 358 HOH HOH . E 4 HOH A 60 660 299 HOH HOH . E 4 HOH A 61 661 246 HOH HOH . E 4 HOH A 62 662 300 HOH HOH . E 4 HOH A 63 663 367 HOH HOH . E 4 HOH A 64 664 214 HOH HOH . E 4 HOH A 65 665 251 HOH HOH . E 4 HOH A 66 666 199 HOH HOH . E 4 HOH A 67 667 273 HOH HOH . E 4 HOH A 68 668 233 HOH HOH . E 4 HOH A 69 669 288 HOH HOH . E 4 HOH A 70 670 303 HOH HOH . E 4 HOH A 71 671 259 HOH HOH . E 4 HOH A 72 672 389 HOH HOH . E 4 HOH A 73 673 323 HOH HOH . E 4 HOH A 74 674 260 HOH HOH . E 4 HOH A 75 675 252 HOH HOH . E 4 HOH A 76 676 272 HOH HOH . E 4 HOH A 77 677 255 HOH HOH . E 4 HOH A 78 678 304 HOH HOH . E 4 HOH A 79 679 302 HOH HOH . E 4 HOH A 80 680 368 HOH HOH . E 4 HOH A 81 681 359 HOH HOH . E 4 HOH A 82 682 345 HOH HOH . E 4 HOH A 83 683 226 HOH HOH . E 4 HOH A 84 684 223 HOH HOH . E 4 HOH A 85 685 275 HOH HOH . E 4 HOH A 86 686 216 HOH HOH . E 4 HOH A 87 687 352 HOH HOH . E 4 HOH A 88 688 197 HOH HOH . E 4 HOH A 89 689 234 HOH HOH . E 4 HOH A 90 690 363 HOH HOH . E 4 HOH A 91 691 277 HOH HOH . E 4 HOH A 92 692 215 HOH HOH . E 4 HOH A 93 693 198 HOH HOH . E 4 HOH A 94 694 276 HOH HOH . E 4 HOH A 95 695 371 HOH HOH . E 4 HOH A 96 696 338 HOH HOH . E 4 HOH A 97 697 231 HOH HOH . E 4 HOH A 98 698 316 HOH HOH . E 4 HOH A 99 699 202 HOH HOH . E 4 HOH A 100 700 261 HOH HOH . E 4 HOH A 101 701 220 HOH HOH . E 4 HOH A 102 702 248 HOH HOH . E 4 HOH A 103 703 331 HOH HOH . E 4 HOH A 104 704 307 HOH HOH . E 4 HOH A 105 705 370 HOH HOH . E 4 HOH A 106 706 228 HOH HOH . E 4 HOH A 107 707 258 HOH HOH . E 4 HOH A 108 708 209 HOH HOH . E 4 HOH A 109 709 256 HOH HOH . E 4 HOH A 110 710 232 HOH HOH . E 4 HOH A 111 711 230 HOH HOH . E 4 HOH A 112 712 6 HOH HOH . E 4 HOH A 113 713 297 HOH HOH . E 4 HOH A 114 714 382 HOH HOH . E 4 HOH A 115 715 278 HOH HOH . E 4 HOH A 116 716 333 HOH HOH . E 4 HOH A 117 717 301 HOH HOH . E 4 HOH A 118 718 207 HOH HOH . E 4 HOH A 119 719 242 HOH HOH . E 4 HOH A 120 720 212 HOH HOH . E 4 HOH A 121 721 350 HOH HOH . E 4 HOH A 122 722 243 HOH HOH . E 4 HOH A 123 723 381 HOH HOH . E 4 HOH A 124 724 296 HOH HOH . E 4 HOH A 125 725 308 HOH HOH . E 4 HOH A 126 726 298 HOH HOH . E 4 HOH A 127 727 224 HOH HOH . E 4 HOH A 128 728 353 HOH HOH . E 4 HOH A 129 729 336 HOH HOH . E 4 HOH A 130 730 268 HOH HOH . E 4 HOH A 131 731 203 HOH HOH . E 4 HOH A 132 732 325 HOH HOH . E 4 HOH A 133 733 375 HOH HOH . E 4 HOH A 134 734 286 HOH HOH . E 4 HOH A 135 735 374 HOH HOH . E 4 HOH A 136 736 328 HOH HOH . E 4 HOH A 137 737 236 HOH HOH . E 4 HOH A 138 738 221 HOH HOH . E 4 HOH A 139 739 388 HOH HOH . E 4 HOH A 140 740 222 HOH HOH . E 4 HOH A 141 741 334 HOH HOH . E 4 HOH A 142 742 347 HOH HOH . E 4 HOH A 143 743 238 HOH HOH . E 4 HOH A 144 744 327 HOH HOH . E 4 HOH A 145 745 257 HOH HOH . E 4 HOH A 146 746 217 HOH HOH . E 4 HOH A 147 747 254 HOH HOH . E 4 HOH A 148 748 225 HOH HOH . E 4 HOH A 149 749 335 HOH HOH . E 4 HOH A 150 750 284 HOH HOH . E 4 HOH A 151 751 357 HOH HOH . E 4 HOH A 152 752 270 HOH HOH . E 4 HOH A 153 753 343 HOH HOH . E 4 HOH A 154 754 309 HOH HOH . E 4 HOH A 155 755 290 HOH HOH . E 4 HOH A 156 756 313 HOH HOH . E 4 HOH A 157 757 201 HOH HOH . E 4 HOH A 158 758 365 HOH HOH . E 4 HOH A 159 759 310 HOH HOH . E 4 HOH A 160 760 229 HOH HOH . E 4 HOH A 161 761 3 HOH HOH . E 4 HOH A 162 762 249 HOH HOH . E 4 HOH A 163 763 354 HOH HOH . E 4 HOH A 164 764 339 HOH HOH . E 4 HOH A 165 765 2 HOH HOH . E 4 HOH A 166 766 211 HOH HOH . E 4 HOH A 167 767 372 HOH HOH . E 4 HOH A 168 768 356 HOH HOH . E 4 HOH A 169 769 330 HOH HOH . E 4 HOH A 170 770 337 HOH HOH . E 4 HOH A 171 771 387 HOH HOH . E 4 HOH A 172 772 321 HOH HOH . E 4 HOH A 173 773 346 HOH HOH . E 4 HOH A 174 774 380 HOH HOH . E 4 HOH A 175 775 314 HOH HOH . E 4 HOH A 176 776 341 HOH HOH . E 4 HOH A 177 777 279 HOH HOH . E 4 HOH A 178 778 344 HOH HOH . E 4 HOH A 179 779 245 HOH HOH . E 4 HOH A 180 780 351 HOH HOH . E 4 HOH A 181 781 369 HOH HOH . E 4 HOH A 182 782 384 HOH HOH . E 4 HOH A 183 783 379 HOH HOH . E 4 HOH A 184 784 364 HOH HOH . E 4 HOH A 185 785 332 HOH HOH . E 4 HOH A 186 786 5 HOH HOH . E 4 HOH A 187 787 227 HOH HOH . E 4 HOH A 188 788 362 HOH HOH . E 4 HOH A 189 789 315 HOH HOH . E 4 HOH A 190 790 326 HOH HOH . E 4 HOH A 191 791 264 HOH HOH . E 4 HOH A 192 792 322 HOH HOH . E 4 HOH A 193 793 373 HOH HOH . E 4 HOH A 194 794 349 HOH HOH . E 4 HOH A 195 795 318 HOH HOH . E 4 HOH A 196 796 274 HOH HOH . E 4 HOH A 197 797 386 HOH HOH . E 4 HOH A 198 798 383 HOH HOH . E 4 HOH A 199 799 378 HOH HOH . E 4 HOH A 200 800 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7BP . . . D 3 25.99 -0.443 -2.641 0.87 23.81 ? C1 7BP 503 A 1 HETATM 2 C C2 7BP . . . D 3 27.386 0.103 -2.274 0.87 22.94 ? C2 7BP 503 A 1 HETATM 3 C C3 7BP . . . D 3 27.645 -0.144 -0.776 0.87 22.55 ? C3 7BP 503 A 1 HETATM 4 C C5 7BP . . . D 3 27.45 1.629 -2.6 0.87 22.15 ? C5 7BP 503 A 1 HETATM 5 C C7 7BP . . . D 3 26.39 2.504 -1.922 0.87 21.31 ? C7 7BP 503 A 1 HETATM 6 C C10 7BP . . . D 3 25.66 5.707 -2.55 0.87 20.12 ? C10 7BP 503 A 1 HETATM 7 C C12 7BP . . . D 3 24.128 7.531 -2.905 0.87 22.46 ? C12 7BP 503 A 1 HETATM 8 C C13 7BP . . . D 3 24.06 7.296 -4.277 0.87 21.47 ? C13 7BP 503 A 1 HETATM 9 C C14 7BP . . . D 3 23.265 8.088 -5.081 0.87 23.15 ? C14 7BP 503 A 1 HETATM 10 C C15 7BP . . . D 3 22.543 9.106 -4.514 0.87 24.46 ? C15 7BP 503 A 1 HETATM 11 C C21 7BP . . . D 3 28.359 3.77 -2.062 0.87 18.61 ? C21 7BP 503 A 1 HETATM 12 C C23 7BP . . . D 3 28.773 2.344 -2.301 0.87 19.49 ? C23 7BP 503 A 1 HETATM 13 C C4 7BP . . . D 3 28.446 -0.648 -3.103 0.87 22.13 ? C4 7BP 503 A 1 HETATM 14 N N8 7BP . . . D 3 27.039 3.804 -1.82 0.87 20.83 ? N8 7BP 503 A 1 HETATM 15 C C9 7BP . . . D 3 26.323 4.998 -1.405 0.87 21.34 ? C9 7BP 503 A 1 HETATM 16 O O11 7BP . . . D 3 24.89 6.797 -2.029 0.87 20.47 ? O11 7BP 503 A 1 HETATM 17 F F16 7BP . . . D 3 21.758 9.889 -5.295 0.87 19.62 ? F16 7BP 503 A 1 HETATM 18 C C17 7BP . . . D 3 22.594 9.359 -3.151 0.87 21.84 ? C17 7BP 503 A 1 HETATM 19 C C18 7BP . . . D 3 21.809 10.452 -2.593 0.87 21.43 ? C18 7BP 503 A 1 HETATM 20 N N19 7BP . . . D 3 21.207 11.291 -2.166 0.87 23.02 ? N19 7BP 503 A 1 HETATM 21 C C20 7BP . . . D 3 23.392 8.565 -2.342 0.87 22.07 ? C20 7BP 503 A 1 HETATM 22 O O22 7BP . . . D 3 29.093 4.748 -2.08 0.87 17.18 ? O22 7BP 503 A 1 HETATM 23 H H24 7BP . . . D 3 25.445 0.276 -3.011 0.87 23.32 ? H24 7BP 503 A 1 HETATM 24 H H25 7BP . . . D 3 25.557 -0.798 -1.841 0.87 23.46 ? H25 7BP 503 A 1 HETATM 25 H H26 7BP . . . D 3 26.08 -1.154 -3.304 0.87 23.46 ? H26 7BP 503 A 1 HETATM 26 H H29 7BP . . . D 3 26.876 -0.592 -0.381 0.87 22.01 ? H29 7BP 503 A 1 HETATM 27 H H27 7BP . . . D 3 27.79 0.707 -0.323 0.87 22.31 ? H27 7BP 503 A 1 HETATM 28 H H28 7BP . . . D 3 28.436 -0.706 -0.667 0.87 22.52 ? H28 7BP 503 A 1 HETATM 29 H H6 7BP . . . D 3 27.297 1.672 -3.572 0.87 21.81 ? H6 7BP 503 A 1 HETATM 30 H H33 7BP . . . D 3 26.158 2.157 -1.038 0.87 21.61 ? H33 7BP 503 A 1 HETATM 31 H H34 7BP . . . D 3 25.579 2.559 -2.465 0.87 21.72 ? H34 7BP 503 A 1 HETATM 32 H H38 7BP . . . D 3 26.337 6.045 -3.168 0.87 20.38 ? H38 7BP 503 A 1 HETATM 33 H H37 7BP . . . D 3 25.075 5.086 -3.036 0.87 20.7 ? H37 7BP 503 A 1 HETATM 34 H H39 7BP . . . D 3 24.557 6.598 -4.657 0.87 21.62 ? H39 7BP 503 A 1 HETATM 35 H H40 7BP . . . D 3 23.219 7.93 -6.008 0.87 22.45 ? H40 7BP 503 A 1 HETATM 36 H H42 7BP . . . D 3 29.388 2.279 -3.062 0.87 20.03 ? H42 7BP 503 A 1 HETATM 37 H H43 7BP . . . D 3 29.209 1.966 -1.511 0.87 20.19 ? H43 7BP 503 A 1 HETATM 38 H H30 7BP . . . D 3 28.936 -0.014 -3.661 0.87 22.24 ? H30 7BP 503 A 1 HETATM 39 H H31 7BP . . . D 3 28.009 -1.309 -3.673 0.87 22.44 ? H31 7BP 503 A 1 HETATM 40 H H32 7BP . . . D 3 29.071 -1.1 -2.504 0.87 21.97 ? H32 7BP 503 A 1 HETATM 41 H H36 7BP . . . D 3 25.64 4.747 -0.746 0.87 20.93 ? H36 7BP 503 A 1 HETATM 42 H H35 7BP . . . D 3 26.951 5.612 -0.969 0.87 20.23 ? H35 7BP 503 A 1 HETATM 43 H H41 7BP . . . D 3 23.434 8.729 -1.414 0.87 21.96 ? H41 7BP 503 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #