data_5LZ9
#
_model_server_result.job_id            BikyfZxvpj7YMfZ4JpoOmQ 
_model_server_result.datetime_utc      '2025-01-10 05:55:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5lz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5LZ9 
#
_exptl.entry_id    5LZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.97 
_cell.angle_gamma         90 
_cell.entry_id            5LZ9 
_cell.length_a            100.044 
_cell.length_b            91.332 
_cell.length_c            51.357 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5LZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 240 A GLU 285 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc2 A O GLU 240 A GLU 285 1_555 C NA NA . A NA 502 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 C NA NA . A NA 502 1_555 E O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
metalc ? metalc4 C NA NA . A NA 502 1_555 E O HOH . A HOH 700 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc5 C NA NA . A NA 502 1_555 E O HOH . A HOH 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc6 C NA NA . A NA 502 1_555 E O HOH . A HOH 819 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5LZ9 
_atom_sites.fract_transf_matrix[1][1]    0.009996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004032 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 501 249 CL CL . 
C 3 NA A 1 502 1 NA NA . 
D 4 7BR A 1 503 1 7BR L01 . 
E 5 HOH A 1 601 380 HOH HOH . 
E 5 HOH A 2 602 457 HOH HOH . 
E 5 HOH A 3 603 483 HOH HOH . 
E 5 HOH A 4 604 336 HOH HOH . 
E 5 HOH A 5 605 360 HOH HOH . 
E 5 HOH A 6 606 313 HOH HOH . 
E 5 HOH A 7 607 312 HOH HOH . 
E 5 HOH A 8 608 454 HOH HOH . 
E 5 HOH A 9 609 449 HOH HOH . 
E 5 HOH A 10 610 470 HOH HOH . 
E 5 HOH A 11 611 297 HOH HOH . 
E 5 HOH A 12 612 279 HOH HOH . 
E 5 HOH A 13 613 271 HOH HOH . 
E 5 HOH A 14 614 384 HOH HOH . 
E 5 HOH A 15 615 373 HOH HOH . 
E 5 HOH A 16 616 404 HOH HOH . 
E 5 HOH A 17 617 337 HOH HOH . 
E 5 HOH A 18 618 397 HOH HOH . 
E 5 HOH A 19 619 354 HOH HOH . 
E 5 HOH A 20 620 292 HOH HOH . 
E 5 HOH A 21 621 286 HOH HOH . 
E 5 HOH A 22 622 425 HOH HOH . 
E 5 HOH A 23 623 314 HOH HOH . 
E 5 HOH A 24 624 342 HOH HOH . 
E 5 HOH A 25 625 265 HOH HOH . 
E 5 HOH A 26 626 466 HOH HOH . 
E 5 HOH A 27 627 302 HOH HOH . 
E 5 HOH A 28 628 301 HOH HOH . 
E 5 HOH A 29 629 367 HOH HOH . 
E 5 HOH A 30 630 343 HOH HOH . 
E 5 HOH A 31 631 316 HOH HOH . 
E 5 HOH A 32 632 329 HOH HOH . 
E 5 HOH A 33 633 267 HOH HOH . 
E 5 HOH A 34 634 10 HOH HOH . 
E 5 HOH A 35 635 341 HOH HOH . 
E 5 HOH A 36 636 335 HOH HOH . 
E 5 HOH A 37 637 281 HOH HOH . 
E 5 HOH A 38 638 400 HOH HOH . 
E 5 HOH A 39 639 264 HOH HOH . 
E 5 HOH A 40 640 274 HOH HOH . 
E 5 HOH A 41 641 448 HOH HOH . 
E 5 HOH A 42 642 287 HOH HOH . 
E 5 HOH A 43 643 420 HOH HOH . 
E 5 HOH A 44 644 495 HOH HOH . 
E 5 HOH A 45 645 418 HOH HOH . 
E 5 HOH A 46 646 381 HOH HOH . 
E 5 HOH A 47 647 253 HOH HOH . 
E 5 HOH A 48 648 277 HOH HOH . 
E 5 HOH A 49 649 290 HOH HOH . 
E 5 HOH A 50 650 331 HOH HOH . 
E 5 HOH A 51 651 259 HOH HOH . 
E 5 HOH A 52 652 388 HOH HOH . 
E 5 HOH A 53 653 485 HOH HOH . 
E 5 HOH A 54 654 252 HOH HOH . 
E 5 HOH A 55 655 280 HOH HOH . 
E 5 HOH A 56 656 363 HOH HOH . 
E 5 HOH A 57 657 434 HOH HOH . 
E 5 HOH A 58 658 453 HOH HOH . 
E 5 HOH A 59 659 276 HOH HOH . 
E 5 HOH A 60 660 315 HOH HOH . 
E 5 HOH A 61 661 251 HOH HOH . 
E 5 HOH A 62 662 308 HOH HOH . 
E 5 HOH A 63 663 408 HOH HOH . 
E 5 HOH A 64 664 330 HOH HOH . 
E 5 HOH A 65 665 372 HOH HOH . 
E 5 HOH A 66 666 357 HOH HOH . 
E 5 HOH A 67 667 261 HOH HOH . 
E 5 HOH A 68 668 352 HOH HOH . 
E 5 HOH A 69 669 409 HOH HOH . 
E 5 HOH A 70 670 255 HOH HOH . 
E 5 HOH A 71 671 296 HOH HOH . 
E 5 HOH A 72 672 325 HOH HOH . 
E 5 HOH A 73 673 310 HOH HOH . 
E 5 HOH A 74 674 382 HOH HOH . 
E 5 HOH A 75 675 309 HOH HOH . 
E 5 HOH A 76 676 294 HOH HOH . 
E 5 HOH A 77 677 288 HOH HOH . 
E 5 HOH A 78 678 299 HOH HOH . 
E 5 HOH A 79 679 347 HOH HOH . 
E 5 HOH A 80 680 394 HOH HOH . 
E 5 HOH A 81 681 398 HOH HOH . 
E 5 HOH A 82 682 257 HOH HOH . 
E 5 HOH A 83 683 491 HOH HOH . 
E 5 HOH A 84 684 262 HOH HOH . 
E 5 HOH A 85 685 12 HOH HOH . 
E 5 HOH A 86 686 346 HOH HOH . 
E 5 HOH A 87 687 254 HOH HOH . 
E 5 HOH A 88 688 370 HOH HOH . 
E 5 HOH A 89 689 478 HOH HOH . 
E 5 HOH A 90 690 328 HOH HOH . 
E 5 HOH A 91 691 256 HOH HOH . 
E 5 HOH A 92 692 451 HOH HOH . 
E 5 HOH A 93 693 295 HOH HOH . 
E 5 HOH A 94 694 490 HOH HOH . 
E 5 HOH A 95 695 456 HOH HOH . 
E 5 HOH A 96 696 464 HOH HOH . 
E 5 HOH A 97 697 270 HOH HOH . 
E 5 HOH A 98 698 439 HOH HOH . 
E 5 HOH A 99 699 260 HOH HOH . 
E 5 HOH A 100 700 2 HOH HOH . 
E 5 HOH A 101 701 258 HOH HOH . 
E 5 HOH A 102 702 415 HOH HOH . 
E 5 HOH A 103 703 306 HOH HOH . 
E 5 HOH A 104 704 305 HOH HOH . 
E 5 HOH A 105 705 477 HOH HOH . 
E 5 HOH A 106 706 350 HOH HOH . 
E 5 HOH A 107 707 395 HOH HOH . 
E 5 HOH A 108 708 250 HOH HOH . 
E 5 HOH A 109 709 461 HOH HOH . 
E 5 HOH A 110 710 311 HOH HOH . 
E 5 HOH A 111 711 275 HOH HOH . 
E 5 HOH A 112 712 278 HOH HOH . 
E 5 HOH A 113 713 482 HOH HOH . 
E 5 HOH A 114 714 430 HOH HOH . 
E 5 HOH A 115 715 333 HOH HOH . 
E 5 HOH A 116 716 319 HOH HOH . 
E 5 HOH A 117 717 385 HOH HOH . 
E 5 HOH A 118 718 303 HOH HOH . 
E 5 HOH A 119 719 304 HOH HOH . 
E 5 HOH A 120 720 393 HOH HOH . 
E 5 HOH A 121 721 428 HOH HOH . 
E 5 HOH A 122 722 392 HOH HOH . 
E 5 HOH A 123 723 374 HOH HOH . 
E 5 HOH A 124 724 359 HOH HOH . 
E 5 HOH A 125 725 422 HOH HOH . 
E 5 HOH A 126 726 317 HOH HOH . 
E 5 HOH A 127 727 423 HOH HOH . 
E 5 HOH A 128 728 446 HOH HOH . 
E 5 HOH A 129 729 358 HOH HOH . 
E 5 HOH A 130 730 334 HOH HOH . 
E 5 HOH A 131 731 338 HOH HOH . 
E 5 HOH A 132 732 348 HOH HOH . 
E 5 HOH A 133 733 386 HOH HOH . 
E 5 HOH A 134 734 266 HOH HOH . 
E 5 HOH A 135 735 361 HOH HOH . 
E 5 HOH A 136 736 300 HOH HOH . 
E 5 HOH A 137 737 282 HOH HOH . 
E 5 HOH A 138 738 364 HOH HOH . 
E 5 HOH A 139 739 368 HOH HOH . 
E 5 HOH A 140 740 405 HOH HOH . 
E 5 HOH A 141 741 327 HOH HOH . 
E 5 HOH A 142 742 378 HOH HOH . 
E 5 HOH A 143 743 377 HOH HOH . 
E 5 HOH A 144 744 5 HOH HOH . 
E 5 HOH A 145 745 473 HOH HOH . 
E 5 HOH A 146 746 339 HOH HOH . 
E 5 HOH A 147 747 421 HOH HOH . 
E 5 HOH A 148 748 472 HOH HOH . 
E 5 HOH A 149 749 375 HOH HOH . 
E 5 HOH A 150 750 410 HOH HOH . 
E 5 HOH A 151 751 283 HOH HOH . 
E 5 HOH A 152 752 273 HOH HOH . 
E 5 HOH A 153 753 289 HOH HOH . 
E 5 HOH A 154 754 344 HOH HOH . 
E 5 HOH A 155 755 467 HOH HOH . 
E 5 HOH A 156 756 426 HOH HOH . 
E 5 HOH A 157 757 433 HOH HOH . 
E 5 HOH A 158 758 492 HOH HOH . 
E 5 HOH A 159 759 298 HOH HOH . 
E 5 HOH A 160 760 437 HOH HOH . 
E 5 HOH A 161 761 268 HOH HOH . 
E 5 HOH A 162 762 272 HOH HOH . 
E 5 HOH A 163 763 383 HOH HOH . 
E 5 HOH A 164 764 436 HOH HOH . 
E 5 HOH A 165 765 387 HOH HOH . 
E 5 HOH A 166 766 458 HOH HOH . 
E 5 HOH A 167 767 447 HOH HOH . 
E 5 HOH A 168 768 321 HOH HOH . 
E 5 HOH A 169 769 396 HOH HOH . 
E 5 HOH A 170 770 353 HOH HOH . 
E 5 HOH A 171 771 424 HOH HOH . 
E 5 HOH A 172 772 307 HOH HOH . 
E 5 HOH A 173 773 399 HOH HOH . 
E 5 HOH A 174 774 460 HOH HOH . 
E 5 HOH A 175 775 431 HOH HOH . 
E 5 HOH A 176 776 3 HOH HOH . 
E 5 HOH A 177 777 269 HOH HOH . 
E 5 HOH A 178 778 484 HOH HOH . 
E 5 HOH A 179 779 318 HOH HOH . 
E 5 HOH A 180 780 389 HOH HOH . 
E 5 HOH A 181 781 496 HOH HOH . 
E 5 HOH A 182 782 445 HOH HOH . 
E 5 HOH A 183 783 455 HOH HOH . 
E 5 HOH A 184 784 291 HOH HOH . 
E 5 HOH A 185 785 332 HOH HOH . 
E 5 HOH A 186 786 293 HOH HOH . 
E 5 HOH A 187 787 406 HOH HOH . 
E 5 HOH A 188 788 441 HOH HOH . 
E 5 HOH A 189 789 365 HOH HOH . 
E 5 HOH A 190 790 403 HOH HOH . 
E 5 HOH A 191 791 355 HOH HOH . 
E 5 HOH A 192 792 494 HOH HOH . 
E 5 HOH A 193 793 401 HOH HOH . 
E 5 HOH A 194 794 326 HOH HOH . 
E 5 HOH A 195 795 323 HOH HOH . 
E 5 HOH A 196 796 362 HOH HOH . 
E 5 HOH A 197 797 438 HOH HOH . 
E 5 HOH A 198 798 345 HOH HOH . 
E 5 HOH A 199 799 340 HOH HOH . 
E 5 HOH A 200 800 322 HOH HOH . 
E 5 HOH A 201 801 324 HOH HOH . 
E 5 HOH A 202 802 263 HOH HOH . 
E 5 HOH A 203 803 468 HOH HOH . 
E 5 HOH A 204 804 459 HOH HOH . 
E 5 HOH A 205 805 476 HOH HOH . 
E 5 HOH A 206 806 462 HOH HOH . 
E 5 HOH A 207 807 413 HOH HOH . 
E 5 HOH A 208 808 465 HOH HOH . 
E 5 HOH A 209 809 481 HOH HOH . 
E 5 HOH A 210 810 14 HOH HOH . 
E 5 HOH A 211 811 366 HOH HOH . 
E 5 HOH A 212 812 15 HOH HOH . 
E 5 HOH A 213 813 489 HOH HOH . 
E 5 HOH A 214 814 443 HOH HOH . 
E 5 HOH A 215 815 480 HOH HOH . 
E 5 HOH A 216 816 440 HOH HOH . 
E 5 HOH A 217 817 475 HOH HOH . 
E 5 HOH A 218 818 488 HOH HOH . 
E 5 HOH A 219 819 1 HOH HOH . 
E 5 HOH A 220 820 11 HOH HOH . 
E 5 HOH A 221 821 452 HOH HOH . 
E 5 HOH A 222 822 487 HOH HOH . 
E 5 HOH A 223 823 351 HOH HOH . 
E 5 HOH A 224 824 417 HOH HOH . 
E 5 HOH A 225 825 356 HOH HOH . 
E 5 HOH A 226 826 13 HOH HOH . 
E 5 HOH A 227 827 493 HOH HOH . 
E 5 HOH A 228 828 391 HOH HOH . 
E 5 HOH A 229 829 479 HOH HOH . 
E 5 HOH A 230 830 444 HOH HOH . 
E 5 HOH A 231 831 469 HOH HOH . 
E 5 HOH A 232 832 6 HOH HOH . 
E 5 HOH A 233 833 411 HOH HOH . 
E 5 HOH A 234 834 442 HOH HOH . 
E 5 HOH A 235 835 376 HOH HOH . 
E 5 HOH A 236 836 349 HOH HOH . 
E 5 HOH A 237 837 4 HOH HOH . 
E 5 HOH A 238 838 9 HOH HOH . 
E 5 HOH A 239 839 407 HOH HOH . 
E 5 HOH A 240 840 402 HOH HOH . 
E 5 HOH A 241 841 284 HOH HOH . 
E 5 HOH A 242 842 474 HOH HOH . 
E 5 HOH A 243 843 416 HOH HOH . 
E 5 HOH A 244 844 450 HOH HOH . 
E 5 HOH A 245 845 379 HOH HOH . 
E 5 HOH A 246 846 432 HOH HOH . 
E 5 HOH A 247 847 8 HOH HOH . 
E 5 HOH A 248 848 7 HOH HOH . 
E 5 HOH A 249 849 390 HOH HOH . 
E 5 HOH A 250 850 412 HOH HOH . 
E 5 HOH A 251 851 369 HOH HOH . 
E 5 HOH A 252 852 429 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               50.08 
_atom_site.Cartn_y               13.364 
_atom_site.Cartn_z               -0.034 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        39.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#