data_5LZK # _model_server_result.job_id XyPo9r7sWPl3Rpg2In8JZA _model_server_result.datetime_utc '2024-10-28 02:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 5LZK # _exptl.entry_id 5LZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.19 _cell.angle_gamma 90 _cell.entry_id 5LZK _cell.length_a 37.498 _cell.length_b 73.959 _cell.length_c 63.081 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5LZK _atom_sites.fract_transf_matrix[1][1] 0.026668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 301 1 IOD IOD . D 2 IOD A 1 302 2 IOD IOD . E 2 IOD A 1 303 3 IOD IOD . F 2 IOD A 1 304 4 IOD IOD . G 3 EDO A 1 305 1 EDO EDO . H 3 EDO A 1 306 4 EDO EDO . I 3 EDO A 1 307 5 EDO EDO . J 3 EDO A 1 308 6 EDO EDO . K 3 EDO B 1 301 2 EDO EDO . L 3 EDO B 1 302 3 EDO EDO . M 3 EDO B 1 303 7 EDO EDO . N 4 HOH A 1 401 250 HOH HOH . N 4 HOH A 2 402 133 HOH HOH . N 4 HOH A 3 403 272 HOH HOH . N 4 HOH A 4 404 176 HOH HOH . N 4 HOH A 5 405 14 HOH HOH . N 4 HOH A 6 406 24 HOH HOH . N 4 HOH A 7 407 108 HOH HOH . N 4 HOH A 8 408 151 HOH HOH . N 4 HOH A 9 409 203 HOH HOH . N 4 HOH A 10 410 68 HOH HOH . N 4 HOH A 11 411 251 HOH HOH . N 4 HOH A 12 412 53 HOH HOH . N 4 HOH A 13 413 150 HOH HOH . N 4 HOH A 14 414 110 HOH HOH . N 4 HOH A 15 415 91 HOH HOH . N 4 HOH A 16 416 270 HOH HOH . N 4 HOH A 17 417 15 HOH HOH . N 4 HOH A 18 418 114 HOH HOH . N 4 HOH A 19 419 18 HOH HOH . N 4 HOH A 20 420 22 HOH HOH . N 4 HOH A 21 421 21 HOH HOH . N 4 HOH A 22 422 79 HOH HOH . N 4 HOH A 23 423 257 HOH HOH . N 4 HOH A 24 424 52 HOH HOH . N 4 HOH A 25 425 55 HOH HOH . N 4 HOH A 26 426 112 HOH HOH . N 4 HOH A 27 427 5 HOH HOH . N 4 HOH A 28 428 72 HOH HOH . N 4 HOH A 29 429 240 HOH HOH . N 4 HOH A 30 430 259 HOH HOH . N 4 HOH A 31 431 247 HOH HOH . N 4 HOH A 32 432 153 HOH HOH . N 4 HOH A 33 433 136 HOH HOH . N 4 HOH A 34 434 164 HOH HOH . N 4 HOH A 35 435 140 HOH HOH . N 4 HOH A 36 436 99 HOH HOH . N 4 HOH A 37 437 3 HOH HOH . N 4 HOH A 38 438 51 HOH HOH . N 4 HOH A 39 439 59 HOH HOH . N 4 HOH A 40 440 63 HOH HOH . N 4 HOH A 41 441 139 HOH HOH . N 4 HOH A 42 442 204 HOH HOH . N 4 HOH A 43 443 158 HOH HOH . N 4 HOH A 44 444 16 HOH HOH . N 4 HOH A 45 445 30 HOH HOH . N 4 HOH A 46 446 70 HOH HOH . N 4 HOH A 47 447 40 HOH HOH . N 4 HOH A 48 448 32 HOH HOH . N 4 HOH A 49 449 146 HOH HOH . N 4 HOH A 50 450 48 HOH HOH . N 4 HOH A 51 451 172 HOH HOH . N 4 HOH A 52 452 174 HOH HOH . N 4 HOH A 53 453 71 HOH HOH . N 4 HOH A 54 454 25 HOH HOH . N 4 HOH A 55 455 61 HOH HOH . N 4 HOH A 56 456 101 HOH HOH . N 4 HOH A 57 457 123 HOH HOH . N 4 HOH A 58 458 243 HOH HOH . N 4 HOH A 59 459 226 HOH HOH . N 4 HOH A 60 460 199 HOH HOH . N 4 HOH A 61 461 35 HOH HOH . N 4 HOH A 62 462 148 HOH HOH . N 4 HOH A 63 463 168 HOH HOH . N 4 HOH A 64 464 6 HOH HOH . N 4 HOH A 65 465 89 HOH HOH . N 4 HOH A 66 466 26 HOH HOH . N 4 HOH A 67 467 37 HOH HOH . N 4 HOH A 68 468 241 HOH HOH . N 4 HOH A 69 469 194 HOH HOH . N 4 HOH A 70 470 12 HOH HOH . N 4 HOH A 71 471 29 HOH HOH . N 4 HOH A 72 472 121 HOH HOH . N 4 HOH A 73 473 125 HOH HOH . N 4 HOH A 74 474 82 HOH HOH . N 4 HOH A 75 475 103 HOH HOH . N 4 HOH A 76 476 45 HOH HOH . N 4 HOH A 77 477 88 HOH HOH . N 4 HOH A 78 478 214 HOH HOH . N 4 HOH A 79 479 107 HOH HOH . N 4 HOH A 80 480 254 HOH HOH . N 4 HOH A 81 481 102 HOH HOH . N 4 HOH A 82 482 135 HOH HOH . N 4 HOH A 83 483 129 HOH HOH . N 4 HOH A 84 484 170 HOH HOH . N 4 HOH A 85 485 278 HOH HOH . N 4 HOH A 86 486 31 HOH HOH . N 4 HOH A 87 487 81 HOH HOH . N 4 HOH A 88 488 195 HOH HOH . N 4 HOH A 89 489 220 HOH HOH . N 4 HOH A 90 490 73 HOH HOH . N 4 HOH A 91 491 56 HOH HOH . N 4 HOH A 92 492 208 HOH HOH . N 4 HOH A 93 493 202 HOH HOH . N 4 HOH A 94 494 120 HOH HOH . N 4 HOH A 95 495 236 HOH HOH . N 4 HOH A 96 496 190 HOH HOH . N 4 HOH A 97 497 193 HOH HOH . N 4 HOH A 98 498 192 HOH HOH . N 4 HOH A 99 499 84 HOH HOH . N 4 HOH A 100 500 2 HOH HOH . N 4 HOH A 101 501 188 HOH HOH . N 4 HOH A 102 502 249 HOH HOH . N 4 HOH A 103 503 182 HOH HOH . N 4 HOH A 104 504 262 HOH HOH . N 4 HOH A 105 505 46 HOH HOH . N 4 HOH A 106 506 155 HOH HOH . N 4 HOH A 107 507 44 HOH HOH . N 4 HOH A 108 508 147 HOH HOH . N 4 HOH A 109 509 7 HOH HOH . N 4 HOH A 110 510 261 HOH HOH . N 4 HOH A 111 511 165 HOH HOH . N 4 HOH A 112 512 185 HOH HOH . N 4 HOH A 113 513 175 HOH HOH . N 4 HOH A 114 514 169 HOH HOH . N 4 HOH A 115 515 197 HOH HOH . N 4 HOH A 116 516 98 HOH HOH . N 4 HOH A 117 517 233 HOH HOH . N 4 HOH A 118 518 152 HOH HOH . N 4 HOH A 119 519 134 HOH HOH . N 4 HOH A 120 520 260 HOH HOH . N 4 HOH A 121 521 187 HOH HOH . N 4 HOH A 122 522 276 HOH HOH . N 4 HOH A 123 523 258 HOH HOH . N 4 HOH A 124 524 157 HOH HOH . N 4 HOH A 125 525 232 HOH HOH . N 4 HOH A 126 526 166 HOH HOH . N 4 HOH A 127 527 143 HOH HOH . N 4 HOH A 128 528 141 HOH HOH . N 4 HOH A 129 529 222 HOH HOH . N 4 HOH A 130 530 92 HOH HOH . N 4 HOH A 131 531 246 HOH HOH . N 4 HOH A 132 532 138 HOH HOH . N 4 HOH A 133 533 186 HOH HOH . N 4 HOH A 134 534 277 HOH HOH . N 4 HOH A 135 535 126 HOH HOH . N 4 HOH A 136 536 205 HOH HOH . N 4 HOH A 137 537 173 HOH HOH . N 4 HOH A 138 538 159 HOH HOH . N 4 HOH A 139 539 256 HOH HOH . N 4 HOH A 140 540 279 HOH HOH . N 4 HOH A 141 541 217 HOH HOH . N 4 HOH A 142 542 171 HOH HOH . N 4 HOH A 143 543 178 HOH HOH . N 4 HOH A 144 544 183 HOH HOH . O 4 HOH B 1 401 245 HOH HOH . O 4 HOH B 2 402 127 HOH HOH . O 4 HOH B 3 403 273 HOH HOH . O 4 HOH B 4 404 87 HOH HOH . O 4 HOH B 5 405 100 HOH HOH . O 4 HOH B 6 406 227 HOH HOH . O 4 HOH B 7 407 231 HOH HOH . O 4 HOH B 8 408 253 HOH HOH . O 4 HOH B 9 409 275 HOH HOH . O 4 HOH B 10 410 64 HOH HOH . O 4 HOH B 11 411 132 HOH HOH . O 4 HOH B 12 412 39 HOH HOH . O 4 HOH B 13 413 11 HOH HOH . O 4 HOH B 14 414 244 HOH HOH . O 4 HOH B 15 415 212 HOH HOH . O 4 HOH B 16 416 74 HOH HOH . O 4 HOH B 17 417 145 HOH HOH . O 4 HOH B 18 418 167 HOH HOH . O 4 HOH B 19 419 36 HOH HOH . O 4 HOH B 20 420 177 HOH HOH . O 4 HOH B 21 421 77 HOH HOH . O 4 HOH B 22 422 78 HOH HOH . O 4 HOH B 23 423 83 HOH HOH . O 4 HOH B 24 424 10 HOH HOH . O 4 HOH B 25 425 95 HOH HOH . O 4 HOH B 26 426 128 HOH HOH . O 4 HOH B 27 427 94 HOH HOH . O 4 HOH B 28 428 209 HOH HOH . O 4 HOH B 29 429 4 HOH HOH . O 4 HOH B 30 430 66 HOH HOH . O 4 HOH B 31 431 9 HOH HOH . O 4 HOH B 32 432 69 HOH HOH . O 4 HOH B 33 433 206 HOH HOH . O 4 HOH B 34 434 105 HOH HOH . O 4 HOH B 35 435 196 HOH HOH . O 4 HOH B 36 436 76 HOH HOH . O 4 HOH B 37 437 104 HOH HOH . O 4 HOH B 38 438 179 HOH HOH . O 4 HOH B 39 439 13 HOH HOH . O 4 HOH B 40 440 23 HOH HOH . O 4 HOH B 41 441 274 HOH HOH . O 4 HOH B 42 442 90 HOH HOH . O 4 HOH B 43 443 57 HOH HOH . O 4 HOH B 44 444 19 HOH HOH . O 4 HOH B 45 445 191 HOH HOH . O 4 HOH B 46 446 161 HOH HOH . O 4 HOH B 47 447 106 HOH HOH . O 4 HOH B 48 448 8 HOH HOH . O 4 HOH B 49 449 60 HOH HOH . O 4 HOH B 50 450 267 HOH HOH . O 4 HOH B 51 451 41 HOH HOH . O 4 HOH B 52 452 20 HOH HOH . O 4 HOH B 53 453 115 HOH HOH . O 4 HOH B 54 454 113 HOH HOH . O 4 HOH B 55 455 264 HOH HOH . O 4 HOH B 56 456 58 HOH HOH . O 4 HOH B 57 457 49 HOH HOH . O 4 HOH B 58 458 47 HOH HOH . O 4 HOH B 59 459 219 HOH HOH . O 4 HOH B 60 460 65 HOH HOH . O 4 HOH B 61 461 38 HOH HOH . O 4 HOH B 62 462 269 HOH HOH . O 4 HOH B 63 463 50 HOH HOH . O 4 HOH B 64 464 137 HOH HOH . O 4 HOH B 65 465 180 HOH HOH . O 4 HOH B 66 466 252 HOH HOH . O 4 HOH B 67 467 111 HOH HOH . O 4 HOH B 68 468 34 HOH HOH . O 4 HOH B 69 469 33 HOH HOH . O 4 HOH B 70 470 119 HOH HOH . O 4 HOH B 71 471 67 HOH HOH . O 4 HOH B 72 472 142 HOH HOH . O 4 HOH B 73 473 54 HOH HOH . O 4 HOH B 74 474 85 HOH HOH . O 4 HOH B 75 475 149 HOH HOH . O 4 HOH B 76 476 62 HOH HOH . O 4 HOH B 77 477 201 HOH HOH . O 4 HOH B 78 478 124 HOH HOH . O 4 HOH B 79 479 238 HOH HOH . O 4 HOH B 80 480 80 HOH HOH . O 4 HOH B 81 481 116 HOH HOH . O 4 HOH B 82 482 96 HOH HOH . O 4 HOH B 83 483 17 HOH HOH . O 4 HOH B 84 484 242 HOH HOH . O 4 HOH B 85 485 181 HOH HOH . O 4 HOH B 86 486 184 HOH HOH . O 4 HOH B 87 487 28 HOH HOH . O 4 HOH B 88 488 43 HOH HOH . O 4 HOH B 89 489 93 HOH HOH . O 4 HOH B 90 490 223 HOH HOH . O 4 HOH B 91 491 118 HOH HOH . O 4 HOH B 92 492 280 HOH HOH . O 4 HOH B 93 493 27 HOH HOH . O 4 HOH B 94 494 228 HOH HOH . O 4 HOH B 95 495 86 HOH HOH . O 4 HOH B 96 496 144 HOH HOH . O 4 HOH B 97 497 211 HOH HOH . O 4 HOH B 98 498 239 HOH HOH . O 4 HOH B 99 499 198 HOH HOH . O 4 HOH B 100 500 97 HOH HOH . O 4 HOH B 101 501 225 HOH HOH . O 4 HOH B 102 502 230 HOH HOH . O 4 HOH B 103 503 75 HOH HOH . O 4 HOH B 104 504 1 HOH HOH . O 4 HOH B 105 505 154 HOH HOH . O 4 HOH B 106 506 213 HOH HOH . O 4 HOH B 107 507 200 HOH HOH . O 4 HOH B 108 508 234 HOH HOH . O 4 HOH B 109 509 235 HOH HOH . O 4 HOH B 110 510 122 HOH HOH . O 4 HOH B 111 511 271 HOH HOH . O 4 HOH B 112 512 42 HOH HOH . O 4 HOH B 113 513 221 HOH HOH . O 4 HOH B 114 514 207 HOH HOH . O 4 HOH B 115 515 109 HOH HOH . O 4 HOH B 116 516 163 HOH HOH . O 4 HOH B 117 517 268 HOH HOH . O 4 HOH B 118 518 156 HOH HOH . O 4 HOH B 119 519 266 HOH HOH . O 4 HOH B 120 520 210 HOH HOH . O 4 HOH B 121 521 263 HOH HOH . O 4 HOH B 122 522 130 HOH HOH . O 4 HOH B 123 523 224 HOH HOH . O 4 HOH B 124 524 117 HOH HOH . O 4 HOH B 125 525 255 HOH HOH . O 4 HOH B 126 526 160 HOH HOH . O 4 HOH B 127 527 162 HOH HOH . O 4 HOH B 128 528 248 HOH HOH . O 4 HOH B 129 529 218 HOH HOH . O 4 HOH B 130 530 215 HOH HOH . O 4 HOH B 131 531 131 HOH HOH . O 4 HOH B 132 532 265 HOH HOH . O 4 HOH B 133 533 216 HOH HOH . O 4 HOH B 134 534 237 HOH HOH . O 4 HOH B 135 535 229 HOH HOH . O 4 HOH B 136 536 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -2.725 -6.861 89.894 1 21.01 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . G 3 -3.445 -8.062 90.16 1 20.71 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . G 3 -3.245 -6.108 88.665 1 23.39 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . G 3 -3.122 -6.903 87.463 1 16.39 ? O2 EDO 305 A 1 HETATM 5 H H11 EDO . . . G 3 -2.79 -6.206 90.766 1 25.21 ? H11 EDO 305 A 1 HETATM 6 H H12 EDO . . . G 3 -1.671 -7.103 89.744 1 25.21 ? H12 EDO 305 A 1 HETATM 7 H HO1 EDO . . . G 3 -3.076 -8.493 90.943 1 24.85 ? HO1 EDO 305 A 1 HETATM 8 H H21 EDO . . . G 3 -2.682 -5.18 88.544 1 28.06 ? H21 EDO 305 A 1 HETATM 9 H H22 EDO . . . G 3 -4.293 -5.844 88.818 1 28.06 ? H22 EDO 305 A 1 HETATM 10 H HO2 EDO . . . G 3 -3.458 -6.4 86.709 1 19.67 ? HO2 EDO 305 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #