data_5LZM # _model_server_result.job_id PE_rnxHQ8lePsBtu-xw85A _model_server_result.datetime_utc '2024-11-28 21:45:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5lzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":900}' # _entry.id 5LZM # _exptl.entry_id 5LZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5LZM _cell.length_a 61.2 _cell.length_b 61.2 _cell.length_c 96.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 54 A CYS 54 1_555 D S2 BME . A BME 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? covale ? covale2 A SG CYS 97 A CYS 97 1_555 E S2 BME . A BME 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? covale ? covale3 F S2 BME . A BME 900 1_555 F S2 BME . A BME 900 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5LZM _atom_sites.fract_transf_matrix[1][1] 0.01634 _atom_sites.fract_transf_matrix[1][2] 0.009434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 173 CL CL . C 2 CL A 1 178 178 CL CL . D 3 BME A 1 179 54 BME SEO . E 3 BME A 1 180 97 BME SEO . F 3 BME A 1 900 900 BME SEO . G 4 HOH A 1 901 171 HOH HOH . G 4 HOH A 2 902 172 HOH HOH . G 4 HOH A 3 903 174 HOH HOH . G 4 HOH A 4 904 175 HOH HOH . G 4 HOH A 5 905 176 HOH HOH . G 4 HOH A 6 906 177 HOH HOH . G 4 HOH A 7 907 179 HOH HOH . G 4 HOH A 8 908 180 HOH HOH . G 4 HOH A 9 909 181 HOH HOH . G 4 HOH A 10 910 182 HOH HOH . G 4 HOH A 11 911 183 HOH HOH . G 4 HOH A 12 912 185 HOH HOH . G 4 HOH A 13 913 186 HOH HOH . G 4 HOH A 14 914 187 HOH HOH . G 4 HOH A 15 915 188 HOH HOH . G 4 HOH A 16 916 189 HOH HOH . G 4 HOH A 17 917 190 HOH HOH . G 4 HOH A 18 918 191 HOH HOH . G 4 HOH A 19 919 192 HOH HOH . G 4 HOH A 20 920 193 HOH HOH . G 4 HOH A 21 921 195 HOH HOH . G 4 HOH A 22 922 198 HOH HOH . G 4 HOH A 23 923 200 HOH HOH . G 4 HOH A 24 924 201 HOH HOH . G 4 HOH A 25 925 202 HOH HOH . G 4 HOH A 26 926 203 HOH HOH . G 4 HOH A 27 927 206 HOH HOH . G 4 HOH A 28 928 208 HOH HOH . G 4 HOH A 29 929 209 HOH HOH . G 4 HOH A 30 930 211 HOH HOH . G 4 HOH A 31 931 212 HOH HOH . G 4 HOH A 32 932 213 HOH HOH . G 4 HOH A 33 933 214 HOH HOH . G 4 HOH A 34 934 215 HOH HOH . G 4 HOH A 35 935 216 HOH HOH . G 4 HOH A 36 936 217 HOH HOH . G 4 HOH A 37 937 218 HOH HOH . G 4 HOH A 38 938 219 HOH HOH . G 4 HOH A 39 939 220 HOH HOH . G 4 HOH A 40 940 221 HOH HOH . G 4 HOH A 41 941 223 HOH HOH . G 4 HOH A 42 942 224 HOH HOH . G 4 HOH A 43 943 226 HOH HOH . G 4 HOH A 44 944 227 HOH HOH . G 4 HOH A 45 945 228 HOH HOH . G 4 HOH A 46 946 231 HOH HOH . G 4 HOH A 47 947 232 HOH HOH . G 4 HOH A 48 948 233 HOH HOH . G 4 HOH A 49 949 234 HOH HOH . G 4 HOH A 50 950 235 HOH HOH . G 4 HOH A 51 951 237 HOH HOH . G 4 HOH A 52 952 238 HOH HOH . G 4 HOH A 53 953 239 HOH HOH . G 4 HOH A 54 954 240 HOH HOH . G 4 HOH A 55 955 242 HOH HOH . G 4 HOH A 56 956 244 HOH HOH . G 4 HOH A 57 957 246 HOH HOH . G 4 HOH A 58 958 247 HOH HOH . G 4 HOH A 59 959 248 HOH HOH . G 4 HOH A 60 960 249 HOH HOH . G 4 HOH A 61 961 251 HOH HOH . G 4 HOH A 62 962 256 HOH HOH . G 4 HOH A 63 963 262 HOH HOH . G 4 HOH A 64 964 266 HOH HOH . G 4 HOH A 65 965 268 HOH HOH . G 4 HOH A 66 966 270 HOH HOH . G 4 HOH A 67 967 273 HOH HOH . G 4 HOH A 68 968 274 HOH HOH . G 4 HOH A 69 969 277 HOH HOH . G 4 HOH A 70 970 278 HOH HOH . G 4 HOH A 71 971 279 HOH HOH . G 4 HOH A 72 972 280 HOH HOH . G 4 HOH A 73 973 281 HOH HOH . G 4 HOH A 74 974 282 HOH HOH . G 4 HOH A 75 975 283 HOH HOH . G 4 HOH A 76 976 284 HOH HOH . G 4 HOH A 77 977 285 HOH HOH . G 4 HOH A 78 978 287 HOH HOH . G 4 HOH A 79 979 288 HOH HOH . G 4 HOH A 80 980 291 HOH HOH . G 4 HOH A 81 981 293 HOH HOH . G 4 HOH A 82 982 295 HOH HOH . G 4 HOH A 83 983 298 HOH HOH . G 4 HOH A 84 984 299 HOH HOH . G 4 HOH A 85 985 300 HOH HOH . G 4 HOH A 86 986 301 HOH HOH . G 4 HOH A 87 987 309 HOH HOH . G 4 HOH A 88 988 311 HOH HOH . G 4 HOH A 89 989 312 HOH HOH . G 4 HOH A 90 990 313 HOH HOH . G 4 HOH A 91 991 314 HOH HOH . G 4 HOH A 92 992 315 HOH HOH . G 4 HOH A 93 993 316 HOH HOH . G 4 HOH A 94 994 317 HOH HOH . G 4 HOH A 95 995 318 HOH HOH . G 4 HOH A 96 996 319 HOH HOH . G 4 HOH A 97 997 320 HOH HOH . G 4 HOH A 98 998 321 HOH HOH . G 4 HOH A 99 999 322 HOH HOH . G 4 HOH A 100 1000 323 HOH HOH . G 4 HOH A 101 1001 324 HOH HOH . G 4 HOH A 102 1002 325 HOH HOH . G 4 HOH A 103 1003 326 HOH HOH . G 4 HOH A 104 1004 327 HOH HOH . G 4 HOH A 105 1005 328 HOH HOH . G 4 HOH A 106 1006 329 HOH HOH . G 4 HOH A 107 1007 330 HOH HOH . G 4 HOH A 108 1008 331 HOH HOH . G 4 HOH A 109 1009 332 HOH HOH . G 4 HOH A 110 1010 333 HOH HOH . G 4 HOH A 111 1011 334 HOH HOH . G 4 HOH A 112 1012 335 HOH HOH . G 4 HOH A 113 1013 336 HOH HOH . G 4 HOH A 114 1014 337 HOH HOH . G 4 HOH A 115 1015 338 HOH HOH . G 4 HOH A 116 1016 339 HOH HOH . G 4 HOH A 117 1017 340 HOH HOH . G 4 HOH A 118 1018 341 HOH HOH . G 4 HOH A 119 1019 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 3 33.269 -0.802 13.494 1 43.58 ? C1 BME 900 A 1 HETATM 2 C C2 BME . . . F 3 32.569 -1.195 14.749 1 50.02 ? C2 BME 900 A 1 HETATM 3 O O1 BME . . . F 3 32.703 -1.819 12.732 1 43.39 ? O1 BME 900 A 1 HETATM 4 S S2 BME . . . F 3 33.842 -0.945 16.027 1 58.91 ? S2 BME 900 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #