data_5M0C # _model_server_result.job_id 4lTZ4kNlQ4FkD6KXllLIUQ _model_server_result.datetime_utc '2024-12-26 13:10:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5M0C # _exptl.entry_id 5M0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M0C _cell.length_a 72.393 _cell.length_b 75.355 _cell.length_c 80.196 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 106 n n S C1 DMS sing 107 n n S C2 DMS sing 108 n n C1 H11 DMS sing 109 n n C1 H12 DMS sing 110 n n C1 H13 DMS sing 111 n n C2 H21 DMS sing 112 n n C2 H22 DMS sing 113 n n C2 H23 DMS sing 114 n n # _atom_sites.entry_id 5M0C _atom_sites.fract_transf_matrix[1][1] 0.013813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7CB A 1 401 1 7CB C14 . D 4 MRD A 1 402 1 MRD MRD . E 5 DMS A 1 403 2 DMS DMS . F 6 HOH A 1 501 165 HOH HOH . F 6 HOH A 2 502 40 HOH HOH . F 6 HOH A 3 503 267 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 70 HOH HOH . F 6 HOH A 6 506 314 HOH HOH . F 6 HOH A 7 507 329 HOH HOH . F 6 HOH A 8 508 7 HOH HOH . F 6 HOH A 9 509 205 HOH HOH . F 6 HOH A 10 510 213 HOH HOH . F 6 HOH A 11 511 34 HOH HOH . F 6 HOH A 12 512 140 HOH HOH . F 6 HOH A 13 513 122 HOH HOH . F 6 HOH A 14 514 164 HOH HOH . F 6 HOH A 15 515 256 HOH HOH . F 6 HOH A 16 516 216 HOH HOH . F 6 HOH A 17 517 249 HOH HOH . F 6 HOH A 18 518 333 HOH HOH . F 6 HOH A 19 519 232 HOH HOH . F 6 HOH A 20 520 202 HOH HOH . F 6 HOH A 21 521 24 HOH HOH . F 6 HOH A 22 522 303 HOH HOH . F 6 HOH A 23 523 99 HOH HOH . F 6 HOH A 24 524 171 HOH HOH . F 6 HOH A 25 525 315 HOH HOH . F 6 HOH A 26 526 248 HOH HOH . F 6 HOH A 27 527 238 HOH HOH . F 6 HOH A 28 528 38 HOH HOH . F 6 HOH A 29 529 3 HOH HOH . F 6 HOH A 30 530 141 HOH HOH . F 6 HOH A 31 531 184 HOH HOH . F 6 HOH A 32 532 84 HOH HOH . F 6 HOH A 33 533 88 HOH HOH . F 6 HOH A 34 534 62 HOH HOH . F 6 HOH A 35 535 30 HOH HOH . F 6 HOH A 36 536 161 HOH HOH . F 6 HOH A 37 537 142 HOH HOH . F 6 HOH A 38 538 279 HOH HOH . F 6 HOH A 39 539 22 HOH HOH . F 6 HOH A 40 540 198 HOH HOH . F 6 HOH A 41 541 71 HOH HOH . F 6 HOH A 42 542 156 HOH HOH . F 6 HOH A 43 543 278 HOH HOH . F 6 HOH A 44 544 203 HOH HOH . F 6 HOH A 45 545 176 HOH HOH . F 6 HOH A 46 546 65 HOH HOH . F 6 HOH A 47 547 200 HOH HOH . F 6 HOH A 48 548 28 HOH HOH . F 6 HOH A 49 549 272 HOH HOH . F 6 HOH A 50 550 27 HOH HOH . F 6 HOH A 51 551 160 HOH HOH . F 6 HOH A 52 552 15 HOH HOH . F 6 HOH A 53 553 93 HOH HOH . F 6 HOH A 54 554 35 HOH HOH . F 6 HOH A 55 555 13 HOH HOH . F 6 HOH A 56 556 78 HOH HOH . F 6 HOH A 57 557 82 HOH HOH . F 6 HOH A 58 558 79 HOH HOH . F 6 HOH A 59 559 41 HOH HOH . F 6 HOH A 60 560 73 HOH HOH . F 6 HOH A 61 561 246 HOH HOH . F 6 HOH A 62 562 135 HOH HOH . F 6 HOH A 63 563 96 HOH HOH . F 6 HOH A 64 564 132 HOH HOH . F 6 HOH A 65 565 8 HOH HOH . F 6 HOH A 66 566 292 HOH HOH . F 6 HOH A 67 567 228 HOH HOH . F 6 HOH A 68 568 334 HOH HOH . F 6 HOH A 69 569 102 HOH HOH . F 6 HOH A 70 570 53 HOH HOH . F 6 HOH A 71 571 74 HOH HOH . F 6 HOH A 72 572 9 HOH HOH . F 6 HOH A 73 573 130 HOH HOH . F 6 HOH A 74 574 55 HOH HOH . F 6 HOH A 75 575 86 HOH HOH . F 6 HOH A 76 576 83 HOH HOH . F 6 HOH A 77 577 233 HOH HOH . F 6 HOH A 78 578 224 HOH HOH . F 6 HOH A 79 579 215 HOH HOH . F 6 HOH A 80 580 117 HOH HOH . F 6 HOH A 81 581 271 HOH HOH . F 6 HOH A 82 582 49 HOH HOH . F 6 HOH A 83 583 225 HOH HOH . F 6 HOH A 84 584 16 HOH HOH . F 6 HOH A 85 585 201 HOH HOH . F 6 HOH A 86 586 121 HOH HOH . F 6 HOH A 87 587 20 HOH HOH . F 6 HOH A 88 588 214 HOH HOH . F 6 HOH A 89 589 252 HOH HOH . F 6 HOH A 90 590 6 HOH HOH . F 6 HOH A 91 591 108 HOH HOH . F 6 HOH A 92 592 37 HOH HOH . F 6 HOH A 93 593 119 HOH HOH . F 6 HOH A 94 594 92 HOH HOH . F 6 HOH A 95 595 197 HOH HOH . F 6 HOH A 96 596 125 HOH HOH . F 6 HOH A 97 597 118 HOH HOH . F 6 HOH A 98 598 253 HOH HOH . F 6 HOH A 99 599 157 HOH HOH . F 6 HOH A 100 600 111 HOH HOH . F 6 HOH A 101 601 245 HOH HOH . F 6 HOH A 102 602 57 HOH HOH . F 6 HOH A 103 603 104 HOH HOH . F 6 HOH A 104 604 31 HOH HOH . F 6 HOH A 105 605 328 HOH HOH . F 6 HOH A 106 606 335 HOH HOH . F 6 HOH A 107 607 1 HOH HOH . F 6 HOH A 108 608 186 HOH HOH . F 6 HOH A 109 609 163 HOH HOH . F 6 HOH A 110 610 188 HOH HOH . F 6 HOH A 111 611 67 HOH HOH . F 6 HOH A 112 612 110 HOH HOH . F 6 HOH A 113 613 33 HOH HOH . F 6 HOH A 114 614 194 HOH HOH . F 6 HOH A 115 615 221 HOH HOH . F 6 HOH A 116 616 54 HOH HOH . F 6 HOH A 117 617 52 HOH HOH . F 6 HOH A 118 618 322 HOH HOH . F 6 HOH A 119 619 241 HOH HOH . F 6 HOH A 120 620 326 HOH HOH . F 6 HOH A 121 621 89 HOH HOH . F 6 HOH A 122 622 87 HOH HOH . F 6 HOH A 123 623 19 HOH HOH . F 6 HOH A 124 624 123 HOH HOH . F 6 HOH A 125 625 325 HOH HOH . F 6 HOH A 126 626 204 HOH HOH . F 6 HOH A 127 627 114 HOH HOH . F 6 HOH A 128 628 151 HOH HOH . F 6 HOH A 129 629 251 HOH HOH . F 6 HOH A 130 630 43 HOH HOH . F 6 HOH A 131 631 44 HOH HOH . F 6 HOH A 132 632 139 HOH HOH . F 6 HOH A 133 633 11 HOH HOH . F 6 HOH A 134 634 210 HOH HOH . F 6 HOH A 135 635 5 HOH HOH . F 6 HOH A 136 636 175 HOH HOH . F 6 HOH A 137 637 75 HOH HOH . F 6 HOH A 138 638 69 HOH HOH . F 6 HOH A 139 639 282 HOH HOH . F 6 HOH A 140 640 242 HOH HOH . F 6 HOH A 141 641 126 HOH HOH . F 6 HOH A 142 642 45 HOH HOH . F 6 HOH A 143 643 332 HOH HOH . F 6 HOH A 144 644 10 HOH HOH . F 6 HOH A 145 645 217 HOH HOH . F 6 HOH A 146 646 212 HOH HOH . F 6 HOH A 147 647 29 HOH HOH . F 6 HOH A 148 648 76 HOH HOH . F 6 HOH A 149 649 46 HOH HOH . F 6 HOH A 150 650 274 HOH HOH . F 6 HOH A 151 651 192 HOH HOH . F 6 HOH A 152 652 182 HOH HOH . F 6 HOH A 153 653 66 HOH HOH . F 6 HOH A 154 654 153 HOH HOH . F 6 HOH A 155 655 58 HOH HOH . F 6 HOH A 156 656 47 HOH HOH . F 6 HOH A 157 657 298 HOH HOH . F 6 HOH A 158 658 250 HOH HOH . F 6 HOH A 159 659 91 HOH HOH . F 6 HOH A 160 660 12 HOH HOH . F 6 HOH A 161 661 81 HOH HOH . F 6 HOH A 162 662 68 HOH HOH . F 6 HOH A 163 663 23 HOH HOH . F 6 HOH A 164 664 191 HOH HOH . F 6 HOH A 165 665 17 HOH HOH . F 6 HOH A 166 666 320 HOH HOH . F 6 HOH A 167 667 85 HOH HOH . F 6 HOH A 168 668 167 HOH HOH . F 6 HOH A 169 669 26 HOH HOH . F 6 HOH A 170 670 95 HOH HOH . F 6 HOH A 171 671 103 HOH HOH . F 6 HOH A 172 672 97 HOH HOH . F 6 HOH A 173 673 331 HOH HOH . F 6 HOH A 174 674 100 HOH HOH . F 6 HOH A 175 675 187 HOH HOH . F 6 HOH A 176 676 144 HOH HOH . F 6 HOH A 177 677 172 HOH HOH . F 6 HOH A 178 678 25 HOH HOH . F 6 HOH A 179 679 270 HOH HOH . F 6 HOH A 180 680 127 HOH HOH . F 6 HOH A 181 681 220 HOH HOH . F 6 HOH A 182 682 297 HOH HOH . F 6 HOH A 183 683 295 HOH HOH . F 6 HOH A 184 684 32 HOH HOH . F 6 HOH A 185 685 106 HOH HOH . F 6 HOH A 186 686 247 HOH HOH . F 6 HOH A 187 687 50 HOH HOH . F 6 HOH A 188 688 146 HOH HOH . F 6 HOH A 189 689 150 HOH HOH . F 6 HOH A 190 690 116 HOH HOH . F 6 HOH A 191 691 284 HOH HOH . F 6 HOH A 192 692 218 HOH HOH . F 6 HOH A 193 693 90 HOH HOH . F 6 HOH A 194 694 330 HOH HOH . F 6 HOH A 195 695 133 HOH HOH . F 6 HOH A 196 696 42 HOH HOH . F 6 HOH A 197 697 162 HOH HOH . F 6 HOH A 198 698 120 HOH HOH . F 6 HOH A 199 699 316 HOH HOH . F 6 HOH A 200 700 300 HOH HOH . F 6 HOH A 201 701 101 HOH HOH . F 6 HOH A 202 702 308 HOH HOH . F 6 HOH A 203 703 129 HOH HOH . F 6 HOH A 204 704 268 HOH HOH . F 6 HOH A 205 705 189 HOH HOH . F 6 HOH A 206 706 169 HOH HOH . F 6 HOH A 207 707 237 HOH HOH . F 6 HOH A 208 708 277 HOH HOH . F 6 HOH A 209 709 254 HOH HOH . F 6 HOH A 210 710 152 HOH HOH . F 6 HOH A 211 711 185 HOH HOH . F 6 HOH A 212 712 211 HOH HOH . F 6 HOH A 213 713 72 HOH HOH . F 6 HOH A 214 714 190 HOH HOH . F 6 HOH A 215 715 159 HOH HOH . F 6 HOH A 216 716 324 HOH HOH . F 6 HOH A 217 717 289 HOH HOH . F 6 HOH A 218 718 149 HOH HOH . F 6 HOH A 219 719 109 HOH HOH . F 6 HOH A 220 720 311 HOH HOH . F 6 HOH A 221 721 138 HOH HOH . F 6 HOH A 222 722 243 HOH HOH . F 6 HOH A 223 723 208 HOH HOH . F 6 HOH A 224 724 173 HOH HOH . F 6 HOH A 225 725 286 HOH HOH . F 6 HOH A 226 726 168 HOH HOH . F 6 HOH A 227 727 309 HOH HOH . F 6 HOH A 228 728 301 HOH HOH . F 6 HOH A 229 729 337 HOH HOH . F 6 HOH A 230 730 338 HOH HOH . F 6 HOH A 231 731 266 HOH HOH . F 6 HOH A 232 732 230 HOH HOH . F 6 HOH A 233 733 148 HOH HOH . F 6 HOH A 234 734 240 HOH HOH . F 6 HOH A 235 735 236 HOH HOH . F 6 HOH A 236 736 158 HOH HOH . F 6 HOH A 237 737 340 HOH HOH . F 6 HOH A 238 738 299 HOH HOH . F 6 HOH A 239 739 319 HOH HOH . F 6 HOH A 240 740 327 HOH HOH . F 6 HOH A 241 741 145 HOH HOH . F 6 HOH A 242 742 143 HOH HOH . F 6 HOH A 243 743 306 HOH HOH . F 6 HOH A 244 744 137 HOH HOH . F 6 HOH A 245 745 177 HOH HOH . F 6 HOH A 246 746 94 HOH HOH . F 6 HOH A 247 747 276 HOH HOH . F 6 HOH A 248 748 263 HOH HOH . F 6 HOH A 249 749 235 HOH HOH . F 6 HOH A 250 750 264 HOH HOH . F 6 HOH A 251 751 147 HOH HOH . F 6 HOH A 252 752 219 HOH HOH . F 6 HOH A 253 753 318 HOH HOH . F 6 HOH A 254 754 269 HOH HOH . F 6 HOH A 255 755 166 HOH HOH . F 6 HOH A 256 756 336 HOH HOH . F 6 HOH A 257 757 244 HOH HOH . F 6 HOH A 258 758 305 HOH HOH . F 6 HOH A 259 759 112 HOH HOH . F 6 HOH A 260 760 293 HOH HOH . F 6 HOH A 261 761 196 HOH HOH . F 6 HOH A 262 762 317 HOH HOH . F 6 HOH A 263 763 339 HOH HOH . G 6 HOH B 1 101 48 HOH HOH . G 6 HOH B 2 102 294 HOH HOH . G 6 HOH B 3 103 39 HOH HOH . G 6 HOH B 4 104 56 HOH HOH . G 6 HOH B 5 105 231 HOH HOH . G 6 HOH B 6 106 259 HOH HOH . G 6 HOH B 7 107 14 HOH HOH . G 6 HOH B 8 108 77 HOH HOH . G 6 HOH B 9 109 98 HOH HOH . G 6 HOH B 10 110 180 HOH HOH . G 6 HOH B 11 111 255 HOH HOH . G 6 HOH B 12 112 18 HOH HOH . G 6 HOH B 13 113 80 HOH HOH . G 6 HOH B 14 114 179 HOH HOH . G 6 HOH B 15 115 60 HOH HOH . G 6 HOH B 16 116 61 HOH HOH . G 6 HOH B 17 117 131 HOH HOH . G 6 HOH B 18 118 193 HOH HOH . G 6 HOH B 19 119 227 HOH HOH . G 6 HOH B 20 120 64 HOH HOH . G 6 HOH B 21 121 229 HOH HOH . G 6 HOH B 22 122 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 5 -39.138 25.869 -9.663 0.7 68.68 ? S DMS 403 A 1 HETATM 2 O O DMS . . . E 5 -37.938 26.707 -9.975 0.7 67.41 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . E 5 -40.433 26.915 -8.941 0.7 64.47 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . E 5 -39.944 25.363 -11.207 0.7 64.46 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #