data_5M0T # _model_server_result.job_id gc9ybMr9IYfzfZDDSwWZjw _model_server_result.datetime_utc '2024-10-28 02:42:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5M0T # _exptl.entry_id 5M0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M0T _cell.length_a 40.25 _cell.length_b 100.17 _cell.length_c 148.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 22 A GLU 21 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A OE2 GLU 22 A GLU 21 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 A OE1 GLU 37 A GLU 36 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 A NE2 HIS 55 A HIS 54 1_555 E ZN ZN . A ZN 303 3_757 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc5 A NE2 HIS 127 A HIS 126 1_555 F ZN ZN . A ZN 304 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 A NE2 HIS 132 A HIS 131 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc7 A OE1 GLU 134 A GLU 133 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 A OE2 GLU 134 A GLU 133 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc9 A OE1 GLU 179 A GLU 178 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc10 A OE2 GLU 179 A GLU 178 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc11 A OD2 ASP 200 A ASP 199 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc12 A NE2 HIS 210 A HIS 209 1_555 C FE FE2 . A FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc13 C FE FE2 . A FE2 301 1_555 D O1 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc14 C FE FE2 . A FE2 301 1_555 D O5 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc15 E ZN ZN . A ZN 303 1_555 H O1 AKG . A AKG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc16 E ZN ZN . A ZN 303 1_555 L O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc17 F ZN ZN . A ZN 304 1_555 L O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc18 F ZN ZN . A ZN 304 1_555 L O HOH . A HOH 407 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.002 ? metalc ? metalc19 F ZN ZN . A ZN 304 1_555 L O HOH . A HOH 426 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc20 G ZN ZN . A ZN 305 1_555 L O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc21 G ZN ZN . A ZN 305 2_754 B OE1 GLU 165 B GLU 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc22 G ZN ZN . A ZN 305 2_754 B OE2 GLU 165 B GLU 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc23 B OE1 GLU 22 B GLU 21 1_555 K ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc24 B OE2 GLU 22 B GLU 21 1_555 K ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc25 B NE2 HIS 127 B HIS 126 1_555 K ZN ZN . B ZN 303 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc26 B NE2 HIS 132 B HIS 131 1_555 I FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc27 B OE1 GLU 134 B GLU 133 1_555 I FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc28 B OE2 GLU 134 B GLU 133 1_555 I FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc29 B NE2 HIS 210 B HIS 209 1_555 I FE FE2 . B FE2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc30 I FE FE2 . B FE2 301 1_555 J O2 AKG . B AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc31 I FE FE2 . B FE2 301 1_555 J O5 AKG . B AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc32 K ZN ZN . B ZN 303 1_555 M O HOH . B HOH 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.764 ? metalc ? metalc33 K ZN ZN . B ZN 303 1_555 M O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc34 K ZN ZN . B ZN 303 1_555 M O HOH . B HOH 403 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M0T _atom_sites.fract_transf_matrix[1][1] 0.024845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 301 900 FE2 FE2 . D 3 AKG A 1 302 901 AKG AKG . E 4 ZN A 1 303 951 ZN ZN . F 4 ZN A 1 304 952 ZN ZN . G 4 ZN A 1 305 953 ZN ZN . H 3 AKG A 1 306 999 AKG AKG . I 2 FE2 B 1 301 900 FE2 FE2 . J 3 AKG B 1 302 901 AKG AKG . K 4 ZN B 1 303 954 ZN ZN . L 5 HOH A 1 401 4 HOH HOH . L 5 HOH A 2 402 26 HOH HOH . L 5 HOH A 3 403 33 HOH HOH . L 5 HOH A 4 404 75 HOH HOH . L 5 HOH A 5 405 87 HOH HOH . L 5 HOH A 6 406 17 HOH HOH . L 5 HOH A 7 407 5 HOH HOH . L 5 HOH A 8 408 7 HOH HOH . L 5 HOH A 9 409 58 HOH HOH . L 5 HOH A 10 410 91 HOH HOH . L 5 HOH A 11 411 41 HOH HOH . L 5 HOH A 12 412 44 HOH HOH . L 5 HOH A 13 413 1 HOH HOH . L 5 HOH A 14 414 24 HOH HOH . L 5 HOH A 15 415 12 HOH HOH . L 5 HOH A 16 416 99 HOH HOH . L 5 HOH A 17 417 82 HOH HOH . L 5 HOH A 18 418 35 HOH HOH . L 5 HOH A 19 419 74 HOH HOH . L 5 HOH A 20 420 3 HOH HOH . L 5 HOH A 21 421 30 HOH HOH . L 5 HOH A 22 422 23 HOH HOH . L 5 HOH A 23 423 73 HOH HOH . L 5 HOH A 24 424 88 HOH HOH . L 5 HOH A 25 425 100 HOH HOH . L 5 HOH A 26 426 6 HOH HOH . L 5 HOH A 27 427 38 HOH HOH . L 5 HOH A 28 428 32 HOH HOH . L 5 HOH A 29 429 71 HOH HOH . L 5 HOH A 30 430 37 HOH HOH . L 5 HOH A 31 431 18 HOH HOH . L 5 HOH A 32 432 105 HOH HOH . L 5 HOH A 33 433 72 HOH HOH . L 5 HOH A 34 434 106 HOH HOH . L 5 HOH A 35 435 78 HOH HOH . L 5 HOH A 36 436 47 HOH HOH . L 5 HOH A 37 437 22 HOH HOH . L 5 HOH A 38 438 56 HOH HOH . L 5 HOH A 39 439 86 HOH HOH . L 5 HOH A 40 440 83 HOH HOH . L 5 HOH A 41 441 94 HOH HOH . L 5 HOH A 42 442 21 HOH HOH . L 5 HOH A 43 443 29 HOH HOH . L 5 HOH A 44 444 95 HOH HOH . L 5 HOH A 45 445 70 HOH HOH . L 5 HOH A 46 446 15 HOH HOH . L 5 HOH A 47 447 46 HOH HOH . L 5 HOH A 48 448 90 HOH HOH . L 5 HOH A 49 449 84 HOH HOH . L 5 HOH A 50 450 25 HOH HOH . L 5 HOH A 51 451 28 HOH HOH . L 5 HOH A 52 452 31 HOH HOH . L 5 HOH A 53 453 107 HOH HOH . L 5 HOH A 54 454 61 HOH HOH . L 5 HOH A 55 455 49 HOH HOH . L 5 HOH A 56 456 101 HOH HOH . L 5 HOH A 57 457 93 HOH HOH . L 5 HOH A 58 458 68 HOH HOH . L 5 HOH A 59 459 89 HOH HOH . L 5 HOH A 60 460 103 HOH HOH . M 5 HOH B 1 401 9 HOH HOH . M 5 HOH B 2 402 8 HOH HOH . M 5 HOH B 3 403 10 HOH HOH . M 5 HOH B 4 404 97 HOH HOH . M 5 HOH B 5 405 34 HOH HOH . M 5 HOH B 6 406 69 HOH HOH . M 5 HOH B 7 407 60 HOH HOH . M 5 HOH B 8 408 39 HOH HOH . M 5 HOH B 9 409 40 HOH HOH . M 5 HOH B 10 410 51 HOH HOH . M 5 HOH B 11 411 59 HOH HOH . M 5 HOH B 12 412 45 HOH HOH . M 5 HOH B 13 413 19 HOH HOH . M 5 HOH B 14 414 11 HOH HOH . M 5 HOH B 15 415 53 HOH HOH . M 5 HOH B 16 416 80 HOH HOH . M 5 HOH B 17 417 27 HOH HOH . M 5 HOH B 18 418 63 HOH HOH . M 5 HOH B 19 419 50 HOH HOH . M 5 HOH B 20 420 85 HOH HOH . M 5 HOH B 21 421 20 HOH HOH . M 5 HOH B 22 422 57 HOH HOH . M 5 HOH B 23 423 48 HOH HOH . M 5 HOH B 24 424 14 HOH HOH . M 5 HOH B 25 425 13 HOH HOH . M 5 HOH B 26 426 43 HOH HOH . M 5 HOH B 27 427 96 HOH HOH . M 5 HOH B 28 428 64 HOH HOH . M 5 HOH B 29 429 65 HOH HOH . M 5 HOH B 30 430 77 HOH HOH . M 5 HOH B 31 431 81 HOH HOH . M 5 HOH B 32 432 42 HOH HOH . M 5 HOH B 33 433 52 HOH HOH . M 5 HOH B 34 434 36 HOH HOH . M 5 HOH B 35 435 55 HOH HOH . M 5 HOH B 36 436 98 HOH HOH . M 5 HOH B 37 437 16 HOH HOH . M 5 HOH B 38 438 104 HOH HOH . M 5 HOH B 39 439 54 HOH HOH . M 5 HOH B 40 440 102 HOH HOH . M 5 HOH B 41 441 79 HOH HOH . M 5 HOH B 42 442 92 HOH HOH . M 5 HOH B 43 443 108 HOH HOH . M 5 HOH B 44 444 76 HOH HOH . M 5 HOH B 45 445 67 HOH HOH . M 5 HOH B 46 446 62 HOH HOH . M 5 HOH B 47 447 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 64.715 _atom_site.Cartn_y 0.346 _atom_site.Cartn_z 191.29 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #