data_5M1C # _model_server_result.job_id Zi0SrLebhmCRhnWO8r5HGw _model_server_result.datetime_utc '2024-11-28 15:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5M1C # _exptl.entry_id 5M1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M1C _cell.length_a 196.435 _cell.length_b 196.435 _cell.length_c 108.382 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -54.191 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 5M1C _atom_sites.fract_transf_matrix[1][1] 0.005091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PG4 B 1 501 1 PG4 1PE . E 3 HOH A 1 501 25 HOH HOH . E 3 HOH A 2 502 126 HOH HOH . E 3 HOH A 3 503 72 HOH HOH . E 3 HOH A 4 504 70 HOH HOH . E 3 HOH A 5 505 21 HOH HOH . E 3 HOH A 6 506 46 HOH HOH . E 3 HOH A 7 507 127 HOH HOH . E 3 HOH A 8 508 16 HOH HOH . E 3 HOH A 9 509 64 HOH HOH . E 3 HOH A 10 510 67 HOH HOH . E 3 HOH A 11 511 59 HOH HOH . F 3 HOH B 1 601 98 HOH HOH . F 3 HOH B 2 602 51 HOH HOH . F 3 HOH B 3 603 7 HOH HOH . F 3 HOH B 4 604 24 HOH HOH . F 3 HOH B 5 605 41 HOH HOH . F 3 HOH B 6 606 19 HOH HOH . F 3 HOH B 7 607 5 HOH HOH . F 3 HOH B 8 608 11 HOH HOH . F 3 HOH B 9 609 82 HOH HOH . F 3 HOH B 10 610 44 HOH HOH . F 3 HOH B 11 611 4 HOH HOH . F 3 HOH B 12 612 39 HOH HOH . F 3 HOH B 13 613 27 HOH HOH . F 3 HOH B 14 614 96 HOH HOH . F 3 HOH B 15 615 9 HOH HOH . F 3 HOH B 16 616 45 HOH HOH . F 3 HOH B 17 617 23 HOH HOH . F 3 HOH B 18 618 77 HOH HOH . F 3 HOH B 19 619 15 HOH HOH . F 3 HOH B 20 620 12 HOH HOH . F 3 HOH B 21 621 40 HOH HOH . F 3 HOH B 22 622 22 HOH HOH . F 3 HOH B 23 623 47 HOH HOH . F 3 HOH B 24 624 42 HOH HOH . F 3 HOH B 25 625 87 HOH HOH . F 3 HOH B 26 626 93 HOH HOH . F 3 HOH B 27 627 121 HOH HOH . G 3 HOH C 1 501 112 HOH HOH . G 3 HOH C 2 502 2 HOH HOH . G 3 HOH C 3 503 6 HOH HOH . G 3 HOH C 4 504 66 HOH HOH . G 3 HOH C 5 505 62 HOH HOH . G 3 HOH C 6 506 54 HOH HOH . G 3 HOH C 7 507 3 HOH HOH . G 3 HOH C 8 508 43 HOH HOH . G 3 HOH C 9 509 17 HOH HOH . G 3 HOH C 10 510 36 HOH HOH . G 3 HOH C 11 511 63 HOH HOH . G 3 HOH C 12 512 49 HOH HOH . G 3 HOH C 13 513 26 HOH HOH . G 3 HOH C 14 514 38 HOH HOH . G 3 HOH C 15 515 31 HOH HOH . G 3 HOH C 16 516 109 HOH HOH . G 3 HOH C 17 517 50 HOH HOH . G 3 HOH C 18 518 30 HOH HOH . G 3 HOH C 19 519 147 HOH HOH . G 3 HOH C 20 520 28 HOH HOH . G 3 HOH C 21 521 99 HOH HOH . G 3 HOH C 22 522 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 2 62.243 -65.152 2.008 1 63.68 ? O1 PG4 501 B 1 HETATM 2 C C1 PG4 . . . D 2 63.488 -65.833 1.853 1 64.15 ? C1 PG4 501 B 1 HETATM 3 C C2 PG4 . . . D 2 64.347 -65.235 0.749 1 65.05 ? C2 PG4 501 B 1 HETATM 4 O O2 PG4 . . . D 2 64.762 -66.206 -0.236 1 73.23 ? O2 PG4 501 B 1 HETATM 5 C C3 PG4 . . . D 2 65.592 -65.682 -1.293 1 74.73 ? C3 PG4 501 B 1 HETATM 6 C C4 PG4 . . . D 2 64.731 -65.078 -2.416 1 77.78 ? C4 PG4 501 B 1 HETATM 7 O O3 PG4 . . . D 2 65.405 -64.091 -3.234 1 77.51 ? O3 PG4 501 B 1 HETATM 8 C C5 PG4 . . . D 2 64.63 -63.789 -4.415 1 83.67 ? C5 PG4 501 B 1 HETATM 9 C C6 PG4 . . . D 2 64.516 -62.293 -4.77 1 81.17 ? C6 PG4 501 B 1 HETATM 10 O O4 PG4 . . . D 2 63.31 -61.672 -4.28 1 75.47 ? O4 PG4 501 B 1 HETATM 11 C C7 PG4 . . . D 2 62.115 -61.85 -5.056 1 75.56 ? C7 PG4 501 B 1 HETATM 12 C C8 PG4 . . . D 2 60.861 -61.244 -4.397 1 68.47 ? C8 PG4 501 B 1 HETATM 13 O O5 PG4 . . . D 2 59.686 -61.902 -4.951 1 68.66 ? O5 PG4 501 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 13 #