data_5M1Q # _model_server_result.job_id 14AfP2j1o7fTGBfEHe7ENA _model_server_result.datetime_utc '2024-10-19 04:40:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5M1Q # _exptl.entry_id 5M1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M1Q _cell.length_a 60.983 _cell.length_b 60.983 _cell.length_c 90.396 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 264 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.973 ? metalc ? metalc2 A OD2 ASP 8 A ASP 264 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 A OD2 ASP 38 A ASP 294 1_555 D ZN ZN . A ZN 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 A OD1 ASP 44 A ASP 300 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 A OE2 GLU 81 A GLU 337 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc6 A NE2 HIS 85 A HIS 341 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc7 A OE1 GLU 122 A GLU 378 1_555 E ZN ZN . A ZN 504 6_554 ? ? ? ? B ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 A OE2 GLU 122 A GLU 378 1_555 E ZN ZN . A ZN 504 6_554 ? ? ? ? A ? ? ? ? ? ? ? 2.186 ? metalc ? metalc9 A OE2 GLU 133 A GLU 389 1_555 C ZN ZN . A ZN 502 6_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 A ND1 HIS 171 A HIS 427 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc11 A OD2 ASP 173 A ASP 429 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc12 A OD1 ASP 173 A ASP 429 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc13 B ZN ZN . A ZN 501 1_555 F O HOH . A HOH 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc14 C ZN ZN . A ZN 502 1_555 F O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc15 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc16 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc17 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc18 D ZN ZN . A ZN 503 1_555 F O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc19 E ZN ZN . A ZN 504 1_555 F O HOH . A HOH 675 5_555 ? A ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc20 E ZN ZN . A ZN 504 1_555 F O HOH . A HOH 675 5_555 ? B ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc21 E ZN ZN . A ZN 504 1_555 F O HOH . A HOH 691 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M1Q _atom_sites.fract_transf_matrix[1][1] 0.016398 _atom_sites.fract_transf_matrix[1][2] 0.009467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 1 ZN ZN . C 2 ZN A 1 502 2 ZN ZN . D 2 ZN A 1 503 4 ZN ZN . E 2 ZN A 1 504 5 ZN ZN . F 3 HOH A 1 601 146 HOH HOH . F 3 HOH A 2 602 30 HOH HOH . F 3 HOH A 3 603 12 HOH HOH . F 3 HOH A 4 604 143 HOH HOH . F 3 HOH A 5 605 45 HOH HOH . F 3 HOH A 6 606 15 HOH HOH . F 3 HOH A 7 607 86 HOH HOH . F 3 HOH A 8 608 63 HOH HOH . F 3 HOH A 9 609 50 HOH HOH . F 3 HOH A 10 610 64 HOH HOH . F 3 HOH A 11 611 109 HOH HOH . F 3 HOH A 12 612 128 HOH HOH . F 3 HOH A 13 613 126 HOH HOH . F 3 HOH A 14 614 156 HOH HOH . F 3 HOH A 15 615 122 HOH HOH . F 3 HOH A 16 616 121 HOH HOH . F 3 HOH A 17 617 71 HOH HOH . F 3 HOH A 18 618 17 HOH HOH . F 3 HOH A 19 619 38 HOH HOH . F 3 HOH A 20 620 55 HOH HOH . F 3 HOH A 21 621 104 HOH HOH . F 3 HOH A 22 622 133 HOH HOH . F 3 HOH A 23 623 68 HOH HOH . F 3 HOH A 24 624 91 HOH HOH . F 3 HOH A 25 625 97 HOH HOH . F 3 HOH A 26 626 52 HOH HOH . F 3 HOH A 27 627 53 HOH HOH . F 3 HOH A 28 628 10 HOH HOH . F 3 HOH A 29 629 5 HOH HOH . F 3 HOH A 30 630 25 HOH HOH . F 3 HOH A 31 631 134 HOH HOH . F 3 HOH A 32 632 21 HOH HOH . F 3 HOH A 33 633 151 HOH HOH . F 3 HOH A 34 634 4 HOH HOH . F 3 HOH A 35 635 72 HOH HOH . F 3 HOH A 36 636 65 HOH HOH . F 3 HOH A 37 637 139 HOH HOH . F 3 HOH A 38 638 8 HOH HOH . F 3 HOH A 39 639 13 HOH HOH . F 3 HOH A 40 640 49 HOH HOH . F 3 HOH A 41 641 154 HOH HOH . F 3 HOH A 42 642 145 HOH HOH . F 3 HOH A 43 643 150 HOH HOH . F 3 HOH A 44 644 131 HOH HOH . F 3 HOH A 45 645 84 HOH HOH . F 3 HOH A 46 646 22 HOH HOH . F 3 HOH A 47 647 32 HOH HOH . F 3 HOH A 48 648 19 HOH HOH . F 3 HOH A 49 649 75 HOH HOH . F 3 HOH A 50 650 58 HOH HOH . F 3 HOH A 51 651 34 HOH HOH . F 3 HOH A 52 652 6 HOH HOH . F 3 HOH A 53 653 60 HOH HOH . F 3 HOH A 54 654 82 HOH HOH . F 3 HOH A 55 655 37 HOH HOH . F 3 HOH A 56 656 51 HOH HOH . F 3 HOH A 57 657 85 HOH HOH . F 3 HOH A 58 658 44 HOH HOH . F 3 HOH A 59 659 9 HOH HOH . F 3 HOH A 60 660 1 HOH HOH . F 3 HOH A 61 661 130 HOH HOH . F 3 HOH A 62 662 98 HOH HOH . F 3 HOH A 63 663 115 HOH HOH . F 3 HOH A 64 664 56 HOH HOH . F 3 HOH A 65 665 136 HOH HOH . F 3 HOH A 66 666 35 HOH HOH . F 3 HOH A 67 667 61 HOH HOH . F 3 HOH A 68 668 149 HOH HOH . F 3 HOH A 69 669 117 HOH HOH . F 3 HOH A 70 670 11 HOH HOH . F 3 HOH A 71 671 138 HOH HOH . F 3 HOH A 72 672 135 HOH HOH . F 3 HOH A 73 673 46 HOH HOH . F 3 HOH A 74 674 106 HOH HOH . F 3 HOH A 75 675 120 HOH HOH . F 3 HOH A 76 676 123 HOH HOH . F 3 HOH A 77 677 36 HOH HOH . F 3 HOH A 78 678 80 HOH HOH . F 3 HOH A 79 679 137 HOH HOH . F 3 HOH A 80 680 79 HOH HOH . F 3 HOH A 81 681 59 HOH HOH . F 3 HOH A 82 682 148 HOH HOH . F 3 HOH A 83 683 124 HOH HOH . F 3 HOH A 84 684 144 HOH HOH . F 3 HOH A 85 685 125 HOH HOH . F 3 HOH A 86 686 119 HOH HOH . F 3 HOH A 87 687 127 HOH HOH . F 3 HOH A 88 688 70 HOH HOH . F 3 HOH A 89 689 27 HOH HOH . F 3 HOH A 90 690 14 HOH HOH . F 3 HOH A 91 691 118 HOH HOH . F 3 HOH A 92 692 48 HOH HOH . F 3 HOH A 93 693 81 HOH HOH . F 3 HOH A 94 694 155 HOH HOH . F 3 HOH A 95 695 141 HOH HOH . F 3 HOH A 96 696 132 HOH HOH . F 3 HOH A 97 697 78 HOH HOH . F 3 HOH A 98 698 129 HOH HOH . F 3 HOH A 99 699 152 HOH HOH . F 3 HOH A 100 700 147 HOH HOH . F 3 HOH A 101 701 102 HOH HOH . F 3 HOH A 102 702 153 HOH HOH . F 3 HOH A 103 703 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.513 _atom_site.Cartn_y 26.873 _atom_site.Cartn_z 2.493 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 25.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #