data_5M1T # _model_server_result.job_id oz5YdCGpnw9-P1t9tLVOJg _model_server_result.datetime_utc '2024-11-28 12:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":703}' # _entry.id 5M1T # _exptl.entry_id 5M1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.52 _cell.angle_gamma 90 _cell.entry_id 5M1T _cell.length_a 46.37 _cell.length_b 116.11 _cell.length_c 52.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 65 A GLU 469 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A OD1 ASN 124 A ASN 528 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 A OE1 GLU 156 A GLU 560 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A OD2 ASP 186 A ASP 590 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 A OD1 ASP 186 A ASP 590 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 A OD1 ASP 187 A ASP 591 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 A OE1 GLU 243 A GLU 647 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc8 A OE2 GLU 243 A GLU 647 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc9 C O2P C2E . A C2E 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 C O1P C2E . A C2E 701 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc11 D MG MG . A MG 702 1_555 I O HOH . A HOH 825 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 E MG MG . A MG 703 1_555 I O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc13 B OE2 GLU 65 B GLU 469 1_555 H MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc14 B OD1 ASN 124 B ASN 528 1_555 H MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc15 B OE1 GLU 156 B GLU 560 1_555 H MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc16 B OD1 ASP 186 B ASP 590 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc17 B OD2 ASP 186 B ASP 590 1_555 H MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc18 B OD1 ASP 187 B ASP 591 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc19 B OE1 GLU 243 B GLU 647 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc20 B OE2 GLU 243 B GLU 647 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc21 F O11 C2E . B C2E 701 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc22 F O21 C2E . B C2E 701 1_555 H MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc23 G MG MG . B MG 702 1_555 J O HOH . B HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc24 G MG MG . B MG 702 1_555 J O HOH . B HOH 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc25 H MG MG . B MG 703 1_555 J O HOH . B HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M1T _atom_sites.fract_transf_matrix[1][1] 0.021566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C2E A 1 701 1 C2E C2E . D 3 MG A 1 702 1 MG MG . E 3 MG A 1 703 2 MG MG . F 2 C2E B 1 701 2 C2E C2E . G 3 MG B 1 702 3 MG MG . H 3 MG B 1 703 4 MG MG . I 4 HOH A 1 801 198 HOH HOH . I 4 HOH A 2 802 200 HOH HOH . I 4 HOH A 3 803 56 HOH HOH . I 4 HOH A 4 804 142 HOH HOH . I 4 HOH A 5 805 139 HOH HOH . I 4 HOH A 6 806 13 HOH HOH . I 4 HOH A 7 807 113 HOH HOH . I 4 HOH A 8 808 199 HOH HOH . I 4 HOH A 9 809 118 HOH HOH . I 4 HOH A 10 810 36 HOH HOH . I 4 HOH A 11 811 91 HOH HOH . I 4 HOH A 12 812 59 HOH HOH . I 4 HOH A 13 813 95 HOH HOH . I 4 HOH A 14 814 230 HOH HOH . I 4 HOH A 15 815 155 HOH HOH . I 4 HOH A 16 816 89 HOH HOH . I 4 HOH A 17 817 222 HOH HOH . I 4 HOH A 18 818 148 HOH HOH . I 4 HOH A 19 819 104 HOH HOH . I 4 HOH A 20 820 17 HOH HOH . I 4 HOH A 21 821 69 HOH HOH . I 4 HOH A 22 822 102 HOH HOH . I 4 HOH A 23 823 27 HOH HOH . I 4 HOH A 24 824 85 HOH HOH . I 4 HOH A 25 825 196 HOH HOH . I 4 HOH A 26 826 216 HOH HOH . I 4 HOH A 27 827 103 HOH HOH . I 4 HOH A 28 828 145 HOH HOH . I 4 HOH A 29 829 25 HOH HOH . I 4 HOH A 30 830 87 HOH HOH . I 4 HOH A 31 831 58 HOH HOH . I 4 HOH A 32 832 97 HOH HOH . I 4 HOH A 33 833 127 HOH HOH . I 4 HOH A 34 834 73 HOH HOH . I 4 HOH A 35 835 114 HOH HOH . I 4 HOH A 36 836 16 HOH HOH . I 4 HOH A 37 837 8 HOH HOH . I 4 HOH A 38 838 144 HOH HOH . I 4 HOH A 39 839 18 HOH HOH . I 4 HOH A 40 840 48 HOH HOH . I 4 HOH A 41 841 31 HOH HOH . I 4 HOH A 42 842 134 HOH HOH . I 4 HOH A 43 843 50 HOH HOH . I 4 HOH A 44 844 174 HOH HOH . I 4 HOH A 45 845 75 HOH HOH . I 4 HOH A 46 846 67 HOH HOH . I 4 HOH A 47 847 53 HOH HOH . I 4 HOH A 48 848 117 HOH HOH . I 4 HOH A 49 849 215 HOH HOH . I 4 HOH A 50 850 176 HOH HOH . I 4 HOH A 51 851 76 HOH HOH . I 4 HOH A 52 852 233 HOH HOH . I 4 HOH A 53 853 224 HOH HOH . I 4 HOH A 54 854 9 HOH HOH . I 4 HOH A 55 855 10 HOH HOH . I 4 HOH A 56 856 175 HOH HOH . I 4 HOH A 57 857 47 HOH HOH . I 4 HOH A 58 858 153 HOH HOH . I 4 HOH A 59 859 220 HOH HOH . I 4 HOH A 60 860 14 HOH HOH . I 4 HOH A 61 861 11 HOH HOH . I 4 HOH A 62 862 28 HOH HOH . I 4 HOH A 63 863 34 HOH HOH . I 4 HOH A 64 864 123 HOH HOH . I 4 HOH A 65 865 180 HOH HOH . I 4 HOH A 66 866 86 HOH HOH . I 4 HOH A 67 867 43 HOH HOH . I 4 HOH A 68 868 94 HOH HOH . I 4 HOH A 69 869 128 HOH HOH . I 4 HOH A 70 870 54 HOH HOH . I 4 HOH A 71 871 39 HOH HOH . I 4 HOH A 72 872 70 HOH HOH . I 4 HOH A 73 873 227 HOH HOH . I 4 HOH A 74 874 201 HOH HOH . I 4 HOH A 75 875 138 HOH HOH . I 4 HOH A 76 876 12 HOH HOH . I 4 HOH A 77 877 6 HOH HOH . I 4 HOH A 78 878 149 HOH HOH . I 4 HOH A 79 879 78 HOH HOH . I 4 HOH A 80 880 90 HOH HOH . I 4 HOH A 81 881 45 HOH HOH . I 4 HOH A 82 882 42 HOH HOH . I 4 HOH A 83 883 192 HOH HOH . I 4 HOH A 84 884 159 HOH HOH . I 4 HOH A 85 885 181 HOH HOH . I 4 HOH A 86 886 44 HOH HOH . I 4 HOH A 87 887 140 HOH HOH . I 4 HOH A 88 888 46 HOH HOH . I 4 HOH A 89 889 168 HOH HOH . I 4 HOH A 90 890 83 HOH HOH . I 4 HOH A 91 891 64 HOH HOH . I 4 HOH A 92 892 80 HOH HOH . I 4 HOH A 93 893 232 HOH HOH . I 4 HOH A 94 894 169 HOH HOH . I 4 HOH A 95 895 187 HOH HOH . I 4 HOH A 96 896 105 HOH HOH . I 4 HOH A 97 897 71 HOH HOH . I 4 HOH A 98 898 213 HOH HOH . I 4 HOH A 99 899 122 HOH HOH . I 4 HOH A 100 900 62 HOH HOH . I 4 HOH A 101 901 40 HOH HOH . I 4 HOH A 102 902 108 HOH HOH . I 4 HOH A 103 903 99 HOH HOH . I 4 HOH A 104 904 157 HOH HOH . I 4 HOH A 105 905 124 HOH HOH . I 4 HOH A 106 906 131 HOH HOH . I 4 HOH A 107 907 228 HOH HOH . I 4 HOH A 108 908 218 HOH HOH . I 4 HOH A 109 909 137 HOH HOH . I 4 HOH A 110 910 207 HOH HOH . I 4 HOH A 111 911 231 HOH HOH . I 4 HOH A 112 912 115 HOH HOH . I 4 HOH A 113 913 88 HOH HOH . I 4 HOH A 114 914 162 HOH HOH . I 4 HOH A 115 915 235 HOH HOH . I 4 HOH A 116 916 166 HOH HOH . I 4 HOH A 117 917 203 HOH HOH . I 4 HOH A 118 918 234 HOH HOH . I 4 HOH A 119 919 229 HOH HOH . I 4 HOH A 120 920 5 HOH HOH . I 4 HOH A 121 921 217 HOH HOH . I 4 HOH A 122 922 173 HOH HOH . I 4 HOH A 123 923 177 HOH HOH . I 4 HOH A 124 924 125 HOH HOH . I 4 HOH A 125 925 24 HOH HOH . I 4 HOH A 126 926 74 HOH HOH . I 4 HOH A 127 927 183 HOH HOH . I 4 HOH A 128 928 241 HOH HOH . I 4 HOH A 129 929 223 HOH HOH . I 4 HOH A 130 930 132 HOH HOH . I 4 HOH A 131 931 237 HOH HOH . J 4 HOH B 1 801 163 HOH HOH . J 4 HOH B 2 802 4 HOH HOH . J 4 HOH B 3 803 121 HOH HOH . J 4 HOH B 4 804 188 HOH HOH . J 4 HOH B 5 805 214 HOH HOH . J 4 HOH B 6 806 35 HOH HOH . J 4 HOH B 7 807 221 HOH HOH . J 4 HOH B 8 808 178 HOH HOH . J 4 HOH B 9 809 112 HOH HOH . J 4 HOH B 10 810 212 HOH HOH . J 4 HOH B 11 811 22 HOH HOH . J 4 HOH B 12 812 109 HOH HOH . J 4 HOH B 13 813 7 HOH HOH . J 4 HOH B 14 814 107 HOH HOH . J 4 HOH B 15 815 82 HOH HOH . J 4 HOH B 16 816 209 HOH HOH . J 4 HOH B 17 817 20 HOH HOH . J 4 HOH B 18 818 111 HOH HOH . J 4 HOH B 19 819 37 HOH HOH . J 4 HOH B 20 820 185 HOH HOH . J 4 HOH B 21 821 151 HOH HOH . J 4 HOH B 22 822 57 HOH HOH . J 4 HOH B 23 823 110 HOH HOH . J 4 HOH B 24 824 219 HOH HOH . J 4 HOH B 25 825 1 HOH HOH . J 4 HOH B 26 826 60 HOH HOH . J 4 HOH B 27 827 38 HOH HOH . J 4 HOH B 28 828 92 HOH HOH . J 4 HOH B 29 829 3 HOH HOH . J 4 HOH B 30 830 141 HOH HOH . J 4 HOH B 31 831 190 HOH HOH . J 4 HOH B 32 832 133 HOH HOH . J 4 HOH B 33 833 51 HOH HOH . J 4 HOH B 34 834 171 HOH HOH . J 4 HOH B 35 835 52 HOH HOH . J 4 HOH B 36 836 33 HOH HOH . J 4 HOH B 37 837 19 HOH HOH . J 4 HOH B 38 838 150 HOH HOH . J 4 HOH B 39 839 63 HOH HOH . J 4 HOH B 40 840 65 HOH HOH . J 4 HOH B 41 841 30 HOH HOH . J 4 HOH B 42 842 41 HOH HOH . J 4 HOH B 43 843 101 HOH HOH . J 4 HOH B 44 844 66 HOH HOH . J 4 HOH B 45 845 61 HOH HOH . J 4 HOH B 46 846 136 HOH HOH . J 4 HOH B 47 847 225 HOH HOH . J 4 HOH B 48 848 242 HOH HOH . J 4 HOH B 49 849 106 HOH HOH . J 4 HOH B 50 850 182 HOH HOH . J 4 HOH B 51 851 23 HOH HOH . J 4 HOH B 52 852 165 HOH HOH . J 4 HOH B 53 853 195 HOH HOH . J 4 HOH B 54 854 238 HOH HOH . J 4 HOH B 55 855 186 HOH HOH . J 4 HOH B 56 856 72 HOH HOH . J 4 HOH B 57 857 55 HOH HOH . J 4 HOH B 58 858 49 HOH HOH . J 4 HOH B 59 859 77 HOH HOH . J 4 HOH B 60 860 179 HOH HOH . J 4 HOH B 61 861 98 HOH HOH . J 4 HOH B 62 862 211 HOH HOH . J 4 HOH B 63 863 240 HOH HOH . J 4 HOH B 64 864 116 HOH HOH . J 4 HOH B 65 865 81 HOH HOH . J 4 HOH B 66 866 239 HOH HOH . J 4 HOH B 67 867 191 HOH HOH . J 4 HOH B 68 868 236 HOH HOH . J 4 HOH B 69 869 204 HOH HOH . J 4 HOH B 70 870 2 HOH HOH . J 4 HOH B 71 871 170 HOH HOH . J 4 HOH B 72 872 120 HOH HOH . J 4 HOH B 73 873 226 HOH HOH . J 4 HOH B 74 874 210 HOH HOH . J 4 HOH B 75 875 156 HOH HOH . J 4 HOH B 76 876 172 HOH HOH . J 4 HOH B 77 877 194 HOH HOH . J 4 HOH B 78 878 193 HOH HOH . J 4 HOH B 79 879 208 HOH HOH . J 4 HOH B 80 880 205 HOH HOH . J 4 HOH B 81 881 206 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 26.158 _atom_site.Cartn_y -11.97 _atom_site.Cartn_z 18.348 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 703 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #