data_5M1Y
#
_model_server_result.job_id            pnxbiV6HRu7RxdRhioz--w 
_model_server_result.datetime_utc      '2024-10-12 15:32:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":223}' 
#
_entry.id    5M1Y 
#
_exptl.entry_id    5M1Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    26 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.92 
_cell.angle_gamma         90 
_cell.entry_id            5M1Y 
_cell.length_a            27.251 
_cell.length_b            62.537 
_cell.length_c            58.981 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,PA 1 1 
B,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 6 B CYS 6 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 B SG CYS 64 B CYS 64 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 B SG CYS 76 B CYS 76 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 C PT PT . A PT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc2 C PT PT . A PT 201 1_555 E I IOD . A IOD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc3 C PT PT . A PT 201 1_555 F I IOD . A IOD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 C PT PT . A PT 201 1_555 S CL CL . A CL 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc5 D PT PT . A PT 202 1_555 G I IOD . A IOD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc6 D PT PT . A PT 202 1_555 H I IOD . A IOD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc7 D PT PT . A PT 202 1_555 I I IOD . A IOD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc8 D PT PT . A PT 202 1_555 T CL CL . A CL 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc9 B ND1 HIS 15 B HIS 15 1_555 Z PT PT . B PT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc10 Z PT PT . B PT 201 1_555 AA I IOD . B IOD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc11 Z PT PT . B PT 201 1_555 BA I IOD . B IOD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc12 Z PT PT . B PT 201 1_555 KA CL CL . B CL 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5M1Y 
_atom_sites.fract_transf_matrix[1][1]    0.036696 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000591 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015991 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016957 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PT A 1 201 201 PT PT . 
D 2 PT A 1 202 202 PT PT . 
E 3 IOD A 1 203 203 IOD IOD . 
F 3 IOD A 1 204 204 IOD IOD . 
G 3 IOD A 1 205 205 IOD IOD . 
H 3 IOD A 1 206 206 IOD IOD . 
I 3 IOD A 1 207 207 IOD IOD . 
J 3 IOD A 1 208 208 IOD IOD . 
K 3 IOD A 1 209 209 IOD IOD . 
L 3 IOD A 1 210 210 IOD IOD . 
M 3 IOD A 1 211 211 IOD IOD . 
N 3 IOD A 1 212 212 IOD IOD . 
O 3 IOD A 1 213 213 IOD IOD . 
P 4 DMS A 1 214 219 DMS DMS . 
Q 4 DMS A 1 215 220 DMS DMS . 
R 4 DMS A 1 216 221 DMS DMS . 
S 5 CL A 1 217 222 CL CL . 
T 5 CL A 1 218 223 CL CL . 
U 3 IOD A 1 219 1 IOD I . 
V 3 IOD A 1 220 2 IOD I . 
W 3 IOD A 1 221 3 IOD I . 
X 3 IOD A 1 222 8 IOD I . 
Y 3 IOD A 1 223 9 IOD I . 
Z 2 PT B 1 201 201 PT PT . 
AA 3 IOD B 1 202 202 IOD IOD . 
BA 3 IOD B 1 203 203 IOD IOD . 
CA 3 IOD B 1 204 204 IOD IOD . 
DA 3 IOD B 1 205 205 IOD IOD . 
EA 3 IOD B 1 206 206 IOD IOD . 
FA 3 IOD B 1 207 208 IOD IOD . 
GA 3 IOD B 1 208 211 IOD IOD . 
HA 4 DMS B 1 209 212 DMS DMS . 
IA 4 DMS B 1 210 214 DMS DMS . 
JA 4 DMS B 1 211 215 DMS DMS . 
KA 5 CL B 1 212 217 CL CL . 
LA 6 NA B 1 213 218 NA NA . 
MA 3 IOD B 1 214 4 IOD I . 
NA 3 IOD B 1 215 6 IOD I . 
OA 3 IOD B 1 216 10 IOD I . 
PA 7 HOH A 1 301 304 HOH HOH . 
PA 7 HOH A 2 302 303 HOH HOH . 
PA 7 HOH A 3 303 317 HOH HOH . 
PA 7 HOH A 4 304 314 HOH HOH . 
PA 7 HOH A 5 305 305 HOH HOH . 
PA 7 HOH A 6 306 320 HOH HOH . 
PA 7 HOH A 7 307 306 HOH HOH . 
PA 7 HOH A 8 308 318 HOH HOH . 
PA 7 HOH A 9 309 307 HOH HOH . 
PA 7 HOH A 10 310 313 HOH HOH . 
PA 7 HOH A 11 311 309 HOH HOH . 
PA 7 HOH A 12 312 316 HOH HOH . 
PA 7 HOH A 13 313 308 HOH HOH . 
PA 7 HOH A 14 314 315 HOH HOH . 
PA 7 HOH A 15 315 310 HOH HOH . 
PA 7 HOH A 16 316 319 HOH HOH . 
QA 7 HOH B 1 301 318 HOH HOH . 
QA 7 HOH B 2 302 317 HOH HOH . 
QA 7 HOH B 3 303 301 HOH HOH . 
QA 7 HOH B 4 304 304 HOH HOH . 
QA 7 HOH B 5 305 319 HOH HOH . 
QA 7 HOH B 6 306 315 HOH HOH . 
QA 7 HOH B 7 307 314 HOH HOH . 
QA 7 HOH B 8 308 302 HOH HOH . 
QA 7 HOH B 9 309 1 HOH HOH . 
QA 7 HOH B 10 310 303 HOH HOH . 
QA 7 HOH B 11 311 305 HOH HOH . 
QA 7 HOH B 12 312 312 HOH HOH . 
QA 7 HOH B 13 313 306 HOH HOH . 
QA 7 HOH B 14 314 316 HOH HOH . 
QA 7 HOH B 15 315 307 HOH HOH . 
QA 7 HOH B 16 316 309 HOH HOH . 
QA 7 HOH B 17 317 311 HOH HOH . 
QA 7 HOH B 18 318 308 HOH HOH . 
QA 7 HOH B 19 319 312 HOH HOH . 
QA 7 HOH B 20 320 2 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Y 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -15.642 
_atom_site.Cartn_y               16.352 
_atom_site.Cartn_z               11.779 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        55.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           223 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#