data_5M2H # _model_server_result.job_id QBbgEXMbEIKdbBtD1ynZKg _model_server_result.datetime_utc '2024-11-01 01:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 5M2H # _exptl.entry_id 5M2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M2H _cell.length_a 49.038 _cell.length_b 57.481 _cell.length_c 21.638 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,I 1 1 B,D,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC A 8 BGC 2 n C RER 2 C 2 RER A 9 RER 2 n D BGC 1 D 1 BGC B 8 BGC 2 n D RER 2 D 2 RER B 9 RER # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale2 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale3 A OH OMZ 2 A OMZ 2 1_555 A C5 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale4 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale5 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale6 A C3 GHP 4 A GHP 4 1_555 A OCZ OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale7 A O4 GHP 4 A GHP 4 1_555 C C1 BGC . C BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale8 A C GHP 5 A GHP 5 1_555 A N OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale9 A C3 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.534 ? covale ? covale10 A C OMY 6 A OMY 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale12 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale13 B OH OMZ 2 B OMZ 2 1_555 B C5 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale14 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale15 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale16 B C3 GHP 4 B GHP 4 1_555 B OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale17 B O4 GHP 4 B GHP 4 1_555 D C1 BGC . D BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale18 B C GHP 5 B GHP 5 1_555 B N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale19 B C3 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale20 B C OMY 6 B OMY 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale21 C O2 BGC . C BGC 1 1_555 C C1 RER . C RER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale22 D O2 BGC . D BGC 1 1_555 D C1 RER . D RER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 E ZN ZN . A ZN 103 1_555 F O2 CIT . A CIT 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 E ZN ZN . A ZN 103 1_555 F O7 CIT . A CIT 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 E ZN ZN . A ZN 103 1_555 F O6 CIT . A CIT 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 E ZN ZN . A ZN 103 1_555 G O5 CIT . A CIT 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 E ZN ZN . A ZN 103 1_555 G O7 CIT . A CIT 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc6 E ZN ZN . A ZN 103 1_555 I O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M2H _atom_sites.fract_transf_matrix[1][1] 0.020392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.046215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 103 1 ZN ZN . F 4 CIT A 1 104 1 CIT FLC . G 4 CIT A 1 105 1 CIT FLC . H 5 P6G B 1 103 1 P6G 15P . I 6 HOH A 1 201 34 HOH HOH . I 6 HOH A 2 202 54 HOH HOH . I 6 HOH A 3 203 58 HOH HOH . I 6 HOH A 4 204 12 HOH HOH . I 6 HOH A 5 205 6 HOH HOH . I 6 HOH A 6 206 10 HOH HOH . I 6 HOH A 7 207 8 HOH HOH . I 6 HOH A 8 208 61 HOH HOH . I 6 HOH A 9 209 15 HOH HOH . I 6 HOH A 10 210 7 HOH HOH . I 6 HOH A 11 211 18 HOH HOH . I 6 HOH A 12 212 43 HOH HOH . I 6 HOH A 13 213 2 HOH HOH . I 6 HOH A 14 214 71 HOH HOH . I 6 HOH A 15 215 20 HOH HOH . I 6 HOH A 16 216 41 HOH HOH . I 6 HOH A 17 217 19 HOH HOH . I 6 HOH A 18 218 9 HOH HOH . I 6 HOH A 19 219 33 HOH HOH . I 6 HOH A 20 220 26 HOH HOH . I 6 HOH A 21 221 14 HOH HOH . I 6 HOH A 22 222 62 HOH HOH . I 6 HOH A 23 223 36 HOH HOH . I 6 HOH A 24 224 22 HOH HOH . I 6 HOH A 25 225 32 HOH HOH . I 6 HOH A 26 226 55 HOH HOH . I 6 HOH A 27 227 69 HOH HOH . I 6 HOH A 28 228 46 HOH HOH . I 6 HOH A 29 229 74 HOH HOH . I 6 HOH A 30 230 35 HOH HOH . I 6 HOH A 31 231 16 HOH HOH . I 6 HOH A 32 232 39 HOH HOH . I 6 HOH A 33 233 31 HOH HOH . I 6 HOH A 34 234 50 HOH HOH . I 6 HOH A 35 235 70 HOH HOH . I 6 HOH A 36 236 24 HOH HOH . I 6 HOH A 37 237 27 HOH HOH . I 6 HOH A 38 238 67 HOH HOH . I 6 HOH A 39 239 44 HOH HOH . I 6 HOH A 40 240 52 HOH HOH . I 6 HOH A 41 241 23 HOH HOH . I 6 HOH A 42 242 51 HOH HOH . I 6 HOH A 43 243 56 HOH HOH . I 6 HOH A 44 244 65 HOH HOH . I 6 HOH A 45 245 38 HOH HOH . J 6 HOH B 1 201 57 HOH HOH . J 6 HOH B 2 202 77 HOH HOH . J 6 HOH B 3 203 17 HOH HOH . J 6 HOH B 4 204 47 HOH HOH . J 6 HOH B 5 205 5 HOH HOH . J 6 HOH B 6 206 21 HOH HOH . J 6 HOH B 7 207 30 HOH HOH . J 6 HOH B 8 208 3 HOH HOH . J 6 HOH B 9 209 48 HOH HOH . J 6 HOH B 10 210 66 HOH HOH . J 6 HOH B 11 211 64 HOH HOH . J 6 HOH B 12 212 13 HOH HOH . J 6 HOH B 13 213 40 HOH HOH . J 6 HOH B 14 214 4 HOH HOH . J 6 HOH B 15 215 53 HOH HOH . J 6 HOH B 16 216 25 HOH HOH . J 6 HOH B 17 217 60 HOH HOH . J 6 HOH B 18 218 1 HOH HOH . J 6 HOH B 19 219 45 HOH HOH . J 6 HOH B 20 220 59 HOH HOH . J 6 HOH B 21 221 42 HOH HOH . J 6 HOH B 22 222 75 HOH HOH . J 6 HOH B 23 223 49 HOH HOH . J 6 HOH B 24 224 11 HOH HOH . J 6 HOH B 25 225 76 HOH HOH . J 6 HOH B 26 226 28 HOH HOH . J 6 HOH B 27 227 72 HOH HOH . J 6 HOH B 28 228 29 HOH HOH . J 6 HOH B 29 229 37 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 18.818 _atom_site.Cartn_y -19.012 _atom_site.Cartn_z -1.566 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #