data_5M2K # _model_server_result.job_id FXGV3I8KA6lVyEjsw8bqTA _model_server_result.datetime_utc '2024-11-13 04:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 5M2K # _exptl.entry_id 5M2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M2K _cell.length_a 35.899 _cell.length_b 35.899 _cell.length_c 55.553 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H 1 1 B,D,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC A 8 BGC 2 n C RER 2 C 2 RER A 9 RER 2 n D BGC 1 D 1 BGC B 8 BGC 2 n D RER 2 D 2 RER B 9 RER # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MLU 1 A MLU 1 1_555 A N OMZ 2 A OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale2 A C OMZ 2 A OMZ 2 1_555 A N ASN 3 A ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A OH OMZ 2 A OMZ 2 1_555 A C5 GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale4 A C ASN 3 A ASN 3 1_555 A N GHP 4 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 A C GHP 4 A GHP 4 1_555 A N GHP 5 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 A C3 GHP 4 A GHP 4 1_555 A OCZ OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale7 A O4 GHP 4 A GHP 4 1_555 C C1 BGC . C BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 A C GHP 5 A GHP 5 1_555 A N OMY 6 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale9 A C3 GHP 5 A GHP 5 1_555 A CG1 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.55 ? covale ? covale10 A C OMY 6 A OMY 6 1_555 A N 3FG 7 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale11 B C MLU 1 B MLU 1 1_555 B N OMZ 2 B OMZ 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale12 B C OMZ 2 B OMZ 2 1_555 B N ASN 3 B ASN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale13 B OH OMZ 2 B OMZ 2 1_555 B C5 GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale14 B C ASN 3 B ASN 3 1_555 B N GHP 4 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 B C GHP 4 B GHP 4 1_555 B N GHP 5 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 B C3 GHP 4 B GHP 4 1_555 B OCZ OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale17 B O4 GHP 4 B GHP 4 1_555 D C1 BGC . D BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale18 B C GHP 5 B GHP 5 1_555 B N OMY 6 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale19 B C3 GHP 5 B GHP 5 1_555 B CG1 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? covale ? covale20 B C OMY 6 B OMY 6 1_555 B N 3FG 7 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale21 C O2 BGC . C BGC 1 1_555 C C1 RER . C RER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale22 D O2 BGC . D BGC 1 1_555 D C1 RER . D RER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A N MLU 1 A MLU 1 1_555 F ZN ZN . B ZN 103 8_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A O MLU 1 A MLU 1 1_555 F ZN ZN . B ZN 103 8_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 H O HOH . A HOH 209 1_555 F ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 B N MLU 1 B MLU 1 1_555 F ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 B O MLU 1 B MLU 1 1_555 F ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 F ZN ZN . B ZN 103 1_555 I O HOH . B HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 5M2K _atom_sites.fract_transf_matrix[1][1] 0.027856 _atom_sites.fract_transf_matrix[1][2] 0.016083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 103 1 EDO EDO . F 4 ZN B 1 103 1 ZN ZN . G 3 EDO B 1 104 2 EDO EDO . H 5 HOH A 1 201 72 HOH HOH . H 5 HOH A 2 202 48 HOH HOH . H 5 HOH A 3 203 8 HOH HOH . H 5 HOH A 4 204 9 HOH HOH . H 5 HOH A 5 205 39 HOH HOH . H 5 HOH A 6 206 16 HOH HOH . H 5 HOH A 7 207 30 HOH HOH . H 5 HOH A 8 208 12 HOH HOH . H 5 HOH A 9 209 29 HOH HOH . H 5 HOH A 10 210 13 HOH HOH . H 5 HOH A 11 211 26 HOH HOH . H 5 HOH A 12 212 4 HOH HOH . H 5 HOH A 13 213 71 HOH HOH . H 5 HOH A 14 214 69 HOH HOH . H 5 HOH A 15 215 70 HOH HOH . H 5 HOH A 16 216 75 HOH HOH . H 5 HOH A 17 217 51 HOH HOH . H 5 HOH A 18 218 35 HOH HOH . H 5 HOH A 19 219 18 HOH HOH . H 5 HOH A 20 220 36 HOH HOH . H 5 HOH A 21 221 45 HOH HOH . H 5 HOH A 22 222 31 HOH HOH . H 5 HOH A 23 223 59 HOH HOH . H 5 HOH A 24 224 47 HOH HOH . H 5 HOH A 25 225 42 HOH HOH . H 5 HOH A 26 226 50 HOH HOH . I 5 HOH B 1 201 73 HOH HOH . I 5 HOH B 2 202 15 HOH HOH . I 5 HOH B 3 203 6 HOH HOH . I 5 HOH B 4 204 64 HOH HOH . I 5 HOH B 5 205 14 HOH HOH . I 5 HOH B 6 206 1 HOH HOH . I 5 HOH B 7 207 68 HOH HOH . I 5 HOH B 8 208 25 HOH HOH . I 5 HOH B 9 209 7 HOH HOH . I 5 HOH B 10 210 19 HOH HOH . I 5 HOH B 11 211 28 HOH HOH . I 5 HOH B 12 212 5 HOH HOH . I 5 HOH B 13 213 34 HOH HOH . I 5 HOH B 14 214 67 HOH HOH . I 5 HOH B 15 215 52 HOH HOH . I 5 HOH B 16 216 61 HOH HOH . I 5 HOH B 17 217 22 HOH HOH . I 5 HOH B 18 218 56 HOH HOH . I 5 HOH B 19 219 23 HOH HOH . I 5 HOH B 20 220 63 HOH HOH . I 5 HOH B 21 221 37 HOH HOH . I 5 HOH B 22 222 74 HOH HOH . I 5 HOH B 23 223 60 HOH HOH . I 5 HOH B 24 224 65 HOH HOH . I 5 HOH B 25 225 54 HOH HOH . I 5 HOH B 26 226 55 HOH HOH . I 5 HOH B 27 227 17 HOH HOH . I 5 HOH B 28 228 27 HOH HOH . I 5 HOH B 29 229 38 HOH HOH . I 5 HOH B 30 230 21 HOH HOH . I 5 HOH B 31 231 46 HOH HOH . I 5 HOH B 32 232 57 HOH HOH . I 5 HOH B 33 233 62 HOH HOH . I 5 HOH B 34 234 24 HOH HOH . I 5 HOH B 35 235 66 HOH HOH . I 5 HOH B 36 236 53 HOH HOH . I 5 HOH B 37 237 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -5.24 -0.112 20.011 1 6.94 ? C1 EDO 103 A 1 HETATM 2 O O1 EDO . . . E 3 -5.08 -1.417 20.569 1 5.06 ? O1 EDO 103 A 1 HETATM 3 C C2 EDO . . . E 3 -4.121 0.333 19.166 1 7.53 ? C2 EDO 103 A 1 HETATM 4 O O2 EDO . . . E 3 -3.98 -0.506 17.998 1 7.23 ? O2 EDO 103 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #