data_5M2X
#
_model_server_result.job_id            ayECYWtQ9OBuYcoZBOLwsA 
_model_server_result.datetime_utc      '2024-11-17 06:29:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":1006}' 
#
_entry.id    5M2X 
#
_exptl.entry_id    5M2X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M2X 
_cell.length_a            191.06 
_cell.length_b            192.06 
_cell.length_c            407.23 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K 1 1 
B,L,M,N,O 2 1 
C,P,Q,R,S 3 1 
D,T,U,V,W,X,Y,Z 4 1 
E,AA,BA,CA,DA,EA 5 1 
F,FA,GA,HA,IA,JA,KA,LA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 O N N 
? 4 R N N 
? 4 S N N 
? 4 Y N N 
? 4 Z N N 
? 4 DA N N 
? 4 EA N N 
? 4 KA N N 
? 4 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 440 A GLU 439 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc2 A NE2 HIS 444 A HIS 443 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc3 A SG CYS 449 A CYS 448 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc4 A SG CYS 452 A CYS 451 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc5 A NE2 HIS 715 A HIS 714 1_555 J ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc6 A SG CYS 731 A CYS 730 1_555 J ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc7 A SG CYS 850 A CYS 849 1_555 J ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc8 B NE2 HIS 715 B HIS 714 1_555 O ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc9 B SG CYS 731 B CYS 730 1_555 O ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc10 B SG CYS 850 B CYS 849 1_555 O ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc11 C OE2 GLU 440 C GLU 439 1_555 S ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc12 C NE2 HIS 444 C HIS 443 1_555 S ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc13 C SG CYS 449 C CYS 448 1_555 S ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc14 C SG CYS 452 C CYS 451 1_555 S ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc15 C SG CYS 731 C CYS 730 1_555 R ZN ZN . C ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc16 C SG CYS 850 C CYS 849 1_555 R ZN ZN . C ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc17 D OE2 GLU 440 D GLU 439 1_555 Z ZN ZN . D ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc18 D SG CYS 449 D CYS 448 1_555 Z ZN ZN . D ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc19 D SG CYS 452 D CYS 451 1_555 Z ZN ZN . D ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc20 D NE2 HIS 715 D HIS 714 1_555 Y ZN ZN . D ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc21 D SG CYS 731 D CYS 730 1_555 Y ZN ZN . D ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc22 D SG CYS 850 D CYS 849 1_555 Y ZN ZN . D ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc23 E OE2 GLU 440 E GLU 439 1_555 EA ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc24 E NE2 HIS 444 E HIS 443 1_555 EA ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc25 E SG CYS 449 E CYS 448 1_555 EA ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc26 E SG CYS 452 E CYS 451 1_555 EA ZN ZN . E ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc27 E NE2 HIS 715 E HIS 714 1_555 DA ZN ZN . E ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc28 E SG CYS 731 E CYS 730 1_555 DA ZN ZN . E ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc29 E SG CYS 850 E CYS 849 1_555 DA ZN ZN . E ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc30 F OE2 GLU 440 F GLU 439 1_555 LA ZN ZN . F ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc31 F NE2 HIS 444 F HIS 443 1_555 LA ZN ZN . F ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc32 F SG CYS 449 F CYS 448 1_555 LA ZN ZN . F ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc33 F SG CYS 452 F CYS 451 1_555 LA ZN ZN . F ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc34 F SG CYS 850 F CYS 849 1_555 KA ZN ZN . F ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5M2X 
_atom_sites.fract_transf_matrix[1][1]    0.005234 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005207 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAH A 1 1001 1 SAH SAH . 
H 3 PO4 A 1 1002 3 PO4 PO4 . 
I 3 PO4 A 1 1003 4 PO4 PO4 . 
J 4 ZN A 1 1004 3 ZN ZN . 
K 4 ZN A 1 1005 11 ZN ZN . 
L 2 SAH B 1 1001 2 SAH SAH . 
M 3 PO4 B 1 1002 1 PO4 PO4 . 
N 3 PO4 B 1 1003 5 PO4 PO4 . 
O 4 ZN B 1 1004 4 ZN ZN . 
P 2 SAH C 1 1001 3 SAH SAH . 
Q 3 PO4 C 1 1002 6 PO4 PO4 . 
R 4 ZN C 1 1003 5 ZN ZN . 
S 4 ZN C 1 1004 7 ZN ZN . 
T 2 SAH D 1 1001 4 SAH SAH . 
U 3 PO4 D 1 1002 7 PO4 PO4 . 
V 3 PO4 D 1 1003 8 PO4 PO4 . 
W 3 PO4 D 1 1004 9 PO4 PO4 . 
X 3 PO4 D 1 1005 10 PO4 PO4 . 
Y 4 ZN D 1 1006 1 ZN ZN . 
Z 4 ZN D 1 1007 8 ZN ZN . 
AA 2 SAH E 1 1001 5 SAH SAH . 
BA 3 PO4 E 1 1002 2 PO4 PO4 . 
CA 3 PO4 E 1 1003 11 PO4 PO4 . 
DA 4 ZN E 1 1004 2 ZN ZN . 
EA 4 ZN E 1 1005 9 ZN ZN . 
FA 2 SAH F 1 1001 6 SAH SAH . 
GA 3 PO4 F 1 1002 12 PO4 PO4 . 
HA 3 PO4 F 1 1003 13 PO4 PO4 . 
IA 3 PO4 F 1 1004 14 PO4 PO4 . 
JA 3 PO4 F 1 1005 15 PO4 PO4 . 
KA 4 ZN F 1 1006 6 ZN ZN . 
LA 4 ZN F 1 1007 10 ZN ZN . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         KA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -62.794 
_atom_site.Cartn_y               76.514 
_atom_site.Cartn_z               -22.165 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        89.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1006 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#