data_5M2Z
#
_model_server_result.job_id            qK2h7opKzbDpiLEWDEWTVw 
_model_server_result.datetime_utc      '2024-11-17 08:47:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":1001}' 
#
_entry.id    5M2Z 
#
_exptl.entry_id    5M2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5M2Z 
_cell.length_a            234.578 
_cell.length_b            234.578 
_cell.length_c            406.123 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H,I,J,K 1 1 
B,L,M,N,O 2 1 
C,P,Q,R,S,T 3 1 
D,U,V,W,X 4 1 
E,Y,Z,AA,BA,CA,DA,EA 5 1 
F,FA,GA,HA,IA,JA,KA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 L N N 
? 2 M N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 U N N 
? 2 V N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E NZ LYS 77 E LYS 76 1_555 BA O3 PO4 . E PO4 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? 
metalc ? metalc1 A OE2 GLU 440 A GLU 439 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc2 A NE2 HIS 444 A HIS 443 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 A SG CYS 449 A CYS 448 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc4 A SG CYS 452 A CYS 451 1_555 K ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc5 A NE2 HIS 715 A HIS 714 1_555 J ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc6 A SG CYS 731 A CYS 730 1_555 J ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc7 A SG CYS 850 A CYS 849 1_555 J ZN ZN . A ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc8 B NE2 HIS 715 C HIS 714 1_555 O ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc9 B SG CYS 731 C CYS 730 1_555 O ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc10 B SG CYS 850 C CYS 849 1_555 O ZN ZN . C ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc11 C NE2 HIS 444 B HIS 443 1_555 T ZN ZN . B ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc12 C SG CYS 449 B CYS 448 1_555 T ZN ZN . B ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc13 C SG CYS 452 B CYS 451 1_555 T ZN ZN . B ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc14 C NE2 HIS 715 B HIS 714 1_555 S ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc15 C SG CYS 731 B CYS 730 1_555 S ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc16 C SG CYS 850 B CYS 849 1_555 S ZN ZN . B ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc17 D OE2 GLU 440 D GLU 439 1_555 X ZN ZN . D ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc18 D NE2 HIS 444 D HIS 443 1_555 X ZN ZN . D ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc19 D SG CYS 449 D CYS 448 1_555 X ZN ZN . D ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc20 D SG CYS 452 D CYS 451 1_555 X ZN ZN . D ZN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc21 D NE2 HIS 715 D HIS 714 1_555 W ZN ZN . D ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc22 D SG CYS 850 D CYS 849 1_555 W ZN ZN . D ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc23 E OE2 GLU 440 E GLU 439 1_555 EA ZN ZN . E ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc24 E NE2 HIS 444 E HIS 443 1_555 EA ZN ZN . E ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc25 E SG CYS 449 E CYS 448 1_555 EA ZN ZN . E ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc26 E SG CYS 452 E CYS 451 1_555 EA ZN ZN . E ZN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc27 E NE2 HIS 715 E HIS 714 1_555 DA ZN ZN . E ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc28 E SG CYS 731 E CYS 730 1_555 DA ZN ZN . E ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc29 E SG CYS 850 E CYS 849 1_555 DA ZN ZN . E ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc30 F OE2 GLU 440 F GLU 439 1_555 KA ZN ZN . F ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc31 F NE2 HIS 444 F HIS 443 1_555 KA ZN ZN . F ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc32 F SG CYS 449 F CYS 448 1_555 KA ZN ZN . F ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc33 F SG CYS 452 F CYS 451 1_555 KA ZN ZN . F ZN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc34 F NE2 HIS 715 F HIS 714 1_555 JA ZN ZN . F ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc35 F SG CYS 731 F CYS 730 1_555 JA ZN ZN . F ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc36 F SG CYS 850 F CYS 849 1_555 JA ZN ZN . F ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 258 n n 
P O2 PO4 sing 259 n n 
P O3 PO4 sing 260 n n 
P O4 PO4 sing 261 n n 
#
_atom_sites.entry_id                     5M2Z 
_atom_sites.fract_transf_matrix[1][1]    0.004263 
_atom_sites.fract_transf_matrix[1][2]    0.002461 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PO4 A 1 1001 1 PO4 PO4 . 
H 2 PO4 A 1 1002 3 PO4 PO4 . 
I 2 PO4 A 1 1003 9 PO4 PO4 . 
J 3 ZN A 1 1004 3 ZN ZN . 
K 3 ZN A 1 1005 4 ZN ZN . 
L 2 PO4 C 1 1001 4 PO4 PO4 . 
M 2 PO4 C 1 1002 12 PO4 PO4 . 
N 4 SAH C 1 1003 1 SAH SAH . 
O 3 ZN C 1 1004 7 ZN ZN . 
P 2 PO4 B 1 1001 2 PO4 PO4 . 
Q 2 PO4 B 1 1002 10 PO4 PO4 . 
R 2 PO4 B 1 1003 11 PO4 PO4 . 
S 3 ZN B 1 1004 5 ZN ZN . 
T 3 ZN B 1 1005 6 ZN ZN . 
U 2 PO4 D 1 1001 13 PO4 PO4 . 
V 2 PO4 D 1 1002 14 PO4 PO4 . 
W 3 ZN D 1 1003 1 ZN ZN . 
X 3 ZN D 1 1004 8 ZN ZN . 
Y 2 PO4 E 1 1001 8 PO4 PO4 . 
Z 2 PO4 E 1 1002 15 PO4 PO4 . 
AA 2 PO4 E 1 1003 16 PO4 PO4 . 
BA 2 PO4 E 1 1004 17 PO4 PO4 . 
CA 4 SAH E 1 1005 2 SAH SAH . 
DA 3 ZN E 1 1006 9 ZN ZN . 
EA 3 ZN E 1 1007 10 ZN ZN . 
FA 2 PO4 F 1 1001 7 PO4 PO4 . 
GA 2 PO4 F 1 1002 18 PO4 PO4 . 
HA 2 PO4 F 1 1003 19 PO4 PO4 . 
IA 4 SAH F 1 1004 3 SAH SAH . 
JA 3 ZN F 1 1005 2 ZN ZN . 
KA 3 ZN F 1 1006 11 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . U 2 140.094 97.96 62.633 1 317.78 ? P PO4 1001 D 1 
HETATM 2 O O1 PO4 . . . U 2 141.278 98.564 61.92 1 312.74 ? O1 PO4 1001 D 1 
HETATM 3 O O2 PO4 . . . U 2 138.82 98.587 62.128 1 296.48 ? O2 PO4 1001 D 1 
HETATM 4 O O3 PO4 . . . U 2 140.052 96.481 62.358 1 287.67 ? O3 PO4 1001 D 1 
HETATM 5 O O4 PO4 . . . U 2 140.216 98.202 64.118 1 304.37 ? O4 PO4 1001 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           5 
#