data_5M32
#
_model_server_result.job_id            QCFthcB0NKa7dFtBrfjRNQ 
_model_server_result.datetime_utc      '2025-01-02 22:09:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m32 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":501}' 
#
_entry.id    5M32 
#
_exptl.entry_id    5M32 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          35 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M32 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M32 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    42-meric 
_pdbx_struct_assembly.oligomeric_count      42 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 35 VA N N 
? 35 WA N N 
? 35 XA N N 
? 35 YA N N 
? 35 ZA N N 
? 35 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 L SG CYS 71 L CYS 43 1_555 L SG CYS 224 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 L SG CYS 82 L CYS 54 1_555 L SG CYS 89 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf3 Z SG CYS 71 Z CYS 43 1_555 Z SG CYS 224 Z CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 Z SG CYS 82 Z CYS 54 1_555 Z SG CYS 89 Z CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf5 CA SG CYS 236 c CYS 236 1_555 CA SG CYS 270 c CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 K N THR 1 K THR 1 1_555 TA C23 6VA 4 t 6VA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale2 K OG1 THR 1 K THR 1 1_555 TA C21 6VA 4 t 6VA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale3 Y N THR 1 Y THR 1 1_555 UA C23 6VA 4 u 6VA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale4 Y OG1 THR 1 Y THR 1 1_555 UA C21 6VA 4 u 6VA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
covale ? covale5 TA C4 6V9 1 t 6V9 1 1_555 TA N03 7C9 2 t 7C9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 TA C05 7C9 2 t 7C9 2 1_555 TA N03 7C9 3 t 7C9 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 TA C05 7C9 3 t 7C9 3 1_555 TA N3 6VA 4 t 6VA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 UA C4 6V9 1 u 6V9 1 1_555 UA N03 7C9 2 u 7C9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale9 UA C05 7C9 2 u 7C9 2 1_555 UA N03 7C9 3 u 7C9 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale10 UA C05 7C9 3 u 7C9 3 1_555 UA N3 6VA 4 u 6VA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5M32 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
VA 35 ADP c 1 501 439 ADP ADP . 
WA 35 ADP d 1 501 439 ADP ADP . 
XA 35 ADP e 1 501 439 ADP ADP . 
YA 35 ADP g 1 501 439 ADP ADP . 
ZA 35 ADP g 1 502 440 ADP ADP . 
AB 35 ADP h 1 401 439 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . VA 35 187.2 235.974 189.876 1 0 ? PB ADP 501 c 1 
HETATM 2 O O1B ADP . . . VA 35 187.725 236.187 188.482 1 0 ? O1B ADP 501 c 1 
HETATM 3 O O2B ADP . . . VA 35 187.322 237.174 190.773 1 0 ? O2B ADP 501 c 1 
HETATM 4 O O3B ADP . . . VA 35 187.62 234.674 190.508 1 0 ? O3B ADP 501 c 1 
HETATM 5 P PA ADP . . . VA 35 184.833 237.033 188.978 1 0 ? PA ADP 501 c 1 
HETATM 6 O O1A ADP . . . VA 35 185.604 237.397 187.741 1 0 ? O1A ADP 501 c 1 
HETATM 7 O O2A ADP . . . VA 35 184.566 238.08 190.024 1 0 ? O2A ADP 501 c 1 
HETATM 8 O O3A ADP . . . VA 35 185.618 235.826 189.675 1 0 ? O3A ADP 501 c 1 
HETATM 9 O O5' ADP . . . VA 35 183.434 236.381 188.531 1 0 ? O5' ADP 501 c 1 
HETATM 10 C C5' ADP . . . VA 35 182.335 237.226 188.198 1 0 ? C5' ADP 501 c 1 
HETATM 11 C C4' ADP . . . VA 35 181.005 236.553 188.515 1 0 ? C4' ADP 501 c 1 
HETATM 12 O O4' ADP . . . VA 35 180.525 236.995 189.788 1 0 ? O4' ADP 501 c 1 
HETATM 13 C C3' ADP . . . VA 35 179.945 236.929 187.497 1 0 ? C3' ADP 501 c 1 
HETATM 14 O O3' ADP . . . VA 35 179.232 235.75 187.118 1 0 ? O3' ADP 501 c 1 
HETATM 15 C C2' ADP . . . VA 35 179.042 237.91 188.22 1 0 ? C2' ADP 501 c 1 
HETATM 16 O O2' ADP . . . VA 35 177.66 237.805 187.869 1 0 ? O2' ADP 501 c 1 
HETATM 17 C C1' ADP . . . VA 35 179.231 237.587 189.684 1 0 ? C1' ADP 501 c 1 
HETATM 18 N N9 ADP . . . VA 35 179.152 238.867 190.412 1 0 ? N9 ADP 501 c 1 
HETATM 19 C C8 ADP . . . VA 35 179.941 239.288 191.409 1 0 ? C8 ADP 501 c 1 
HETATM 20 N N7 ADP . . . VA 35 179.572 240.523 191.827 1 0 ? N7 ADP 501 c 1 
HETATM 21 C C5 ADP . . . VA 35 178.527 240.904 191.082 1 0 ? C5 ADP 501 c 1 
HETATM 22 C C6 ADP . . . VA 35 177.655 242.09 191.001 1 0 ? C6 ADP 501 c 1 
HETATM 23 N N6 ADP . . . VA 35 177.824 243.154 191.82 1 0 ? N6 ADP 501 c 1 
HETATM 24 N N1 ADP . . . VA 35 176.679 242.075 190.076 1 0 ? N1 ADP 501 c 1 
HETATM 25 C C2 ADP . . . VA 35 176.497 241.024 189.257 1 0 ? C2 ADP 501 c 1 
HETATM 26 N N3 ADP . . . VA 35 177.251 239.916 189.277 1 0 ? N3 ADP 501 c 1 
HETATM 27 C C4 ADP . . . VA 35 178.26 239.806 190.154 1 0 ? C4 ADP 501 c 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    464 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           27 
#