data_5M33 # _model_server_result.job_id Z_0t9qjx3qkm8PLpteukAw _model_server_result.datetime_utc '2024-12-21 12:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 5M33 # _exptl.entry_id 5M33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.12 _cell.angle_gamma 90 _cell.entry_id 5M33 _cell.length_a 31.445 _cell.length_b 75.846 _cell.length_c 37.363 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 156 1_555 A SG CYS 81 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 48 A CYS 157 1_555 A SG CYS 66 A CYS 175 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 48 A CYS 157 1_555 A SG CYS 66 A CYS 175 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 B SG CYS 47 B CYS 156 1_555 B SG CYS 81 B CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 B SG CYS 48 B CYS 157 1_555 B SG CYS 66 B CYS 175 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 B SG CYS 48 B CYS 157 1_555 B SG CYS 66 B CYS 175 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 57 n n C1 C2 EDO sing 58 n n C1 H11 EDO sing 59 n n C1 H12 EDO sing 60 n n O1 HO1 EDO sing 61 n n C2 O2 EDO sing 62 n n C2 H21 EDO sing 63 n n C2 H22 EDO sing 64 n n O2 HO2 EDO sing 65 n n # _atom_sites.entry_id 5M33 _atom_sites.fract_transf_matrix[1][1] 0.031802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 2 EDO EDO . D 2 EDO A 1 302 3 EDO EDO . E 2 EDO A 1 303 4 EDO EDO . F 2 EDO A 1 304 7 EDO EDO . G 2 EDO B 1 301 1 EDO EDO . H 2 EDO B 1 302 5 EDO EDO . I 2 EDO B 1 303 6 EDO EDO . J 3 HOH A 1 401 185 HOH HOH . J 3 HOH A 2 402 173 HOH HOH . J 3 HOH A 3 403 157 HOH HOH . J 3 HOH A 4 404 182 HOH HOH . J 3 HOH A 5 405 135 HOH HOH . J 3 HOH A 6 406 136 HOH HOH . J 3 HOH A 7 407 165 HOH HOH . J 3 HOH A 8 408 116 HOH HOH . J 3 HOH A 9 409 177 HOH HOH . J 3 HOH A 10 410 85 HOH HOH . J 3 HOH A 11 411 126 HOH HOH . J 3 HOH A 12 412 109 HOH HOH . J 3 HOH A 13 413 156 HOH HOH . J 3 HOH A 14 414 155 HOH HOH . J 3 HOH A 15 415 153 HOH HOH . J 3 HOH A 16 416 137 HOH HOH . J 3 HOH A 17 417 140 HOH HOH . J 3 HOH A 18 418 133 HOH HOH . J 3 HOH A 19 419 119 HOH HOH . J 3 HOH A 20 420 145 HOH HOH . J 3 HOH A 21 421 96 HOH HOH . J 3 HOH A 22 422 160 HOH HOH . J 3 HOH A 23 423 149 HOH HOH . J 3 HOH A 24 424 111 HOH HOH . J 3 HOH A 25 425 139 HOH HOH . J 3 HOH A 26 426 146 HOH HOH . J 3 HOH A 27 427 131 HOH HOH . J 3 HOH A 28 428 164 HOH HOH . J 3 HOH A 29 429 41 HOH HOH . J 3 HOH A 30 430 138 HOH HOH . J 3 HOH A 31 431 130 HOH HOH . J 3 HOH A 32 432 127 HOH HOH . J 3 HOH A 33 433 186 HOH HOH . J 3 HOH A 34 434 124 HOH HOH . J 3 HOH A 35 435 94 HOH HOH . J 3 HOH A 36 436 15 HOH HOH . J 3 HOH A 37 437 35 HOH HOH . J 3 HOH A 38 438 144 HOH HOH . J 3 HOH A 39 439 191 HOH HOH . J 3 HOH A 40 440 13 HOH HOH . J 3 HOH A 41 441 1 HOH HOH . J 3 HOH A 42 442 54 HOH HOH . J 3 HOH A 43 443 143 HOH HOH . J 3 HOH A 44 444 33 HOH HOH . J 3 HOH A 45 445 161 HOH HOH . J 3 HOH A 46 446 123 HOH HOH . J 3 HOH A 47 447 76 HOH HOH . J 3 HOH A 48 448 4 HOH HOH . J 3 HOH A 49 449 141 HOH HOH . J 3 HOH A 50 450 14 HOH HOH . J 3 HOH A 51 451 93 HOH HOH . J 3 HOH A 52 452 158 HOH HOH . J 3 HOH A 53 453 23 HOH HOH . J 3 HOH A 54 454 7 HOH HOH . J 3 HOH A 55 455 20 HOH HOH . J 3 HOH A 56 456 3 HOH HOH . J 3 HOH A 57 457 89 HOH HOH . J 3 HOH A 58 458 45 HOH HOH . J 3 HOH A 59 459 55 HOH HOH . J 3 HOH A 60 460 22 HOH HOH . J 3 HOH A 61 461 79 HOH HOH . J 3 HOH A 62 462 17 HOH HOH . J 3 HOH A 63 463 176 HOH HOH . J 3 HOH A 64 464 50 HOH HOH . J 3 HOH A 65 465 24 HOH HOH . J 3 HOH A 66 466 39 HOH HOH . J 3 HOH A 67 467 132 HOH HOH . J 3 HOH A 68 468 21 HOH HOH . J 3 HOH A 69 469 183 HOH HOH . J 3 HOH A 70 470 188 HOH HOH . J 3 HOH A 71 471 47 HOH HOH . J 3 HOH A 72 472 83 HOH HOH . J 3 HOH A 73 473 80 HOH HOH . J 3 HOH A 74 474 19 HOH HOH . J 3 HOH A 75 475 25 HOH HOH . J 3 HOH A 76 476 181 HOH HOH . J 3 HOH A 77 477 120 HOH HOH . J 3 HOH A 78 478 18 HOH HOH . J 3 HOH A 79 479 113 HOH HOH . J 3 HOH A 80 480 6 HOH HOH . J 3 HOH A 81 481 9 HOH HOH . J 3 HOH A 82 482 62 HOH HOH . J 3 HOH A 83 483 51 HOH HOH . J 3 HOH A 84 484 11 HOH HOH . J 3 HOH A 85 485 66 HOH HOH . J 3 HOH A 86 486 82 HOH HOH . J 3 HOH A 87 487 148 HOH HOH . J 3 HOH A 88 488 38 HOH HOH . J 3 HOH A 89 489 117 HOH HOH . J 3 HOH A 90 490 72 HOH HOH . J 3 HOH A 91 491 194 HOH HOH . J 3 HOH A 92 492 166 HOH HOH . J 3 HOH A 93 493 53 HOH HOH . J 3 HOH A 94 494 121 HOH HOH . J 3 HOH A 95 495 172 HOH HOH . J 3 HOH A 96 496 64 HOH HOH . J 3 HOH A 97 497 58 HOH HOH . J 3 HOH A 98 498 87 HOH HOH . J 3 HOH A 99 499 184 HOH HOH . J 3 HOH A 100 500 99 HOH HOH . J 3 HOH A 101 501 125 HOH HOH . J 3 HOH A 102 502 90 HOH HOH . J 3 HOH A 103 503 86 HOH HOH . J 3 HOH A 104 504 84 HOH HOH . J 3 HOH A 105 505 150 HOH HOH . J 3 HOH A 106 506 152 HOH HOH . J 3 HOH A 107 507 37 HOH HOH . J 3 HOH A 108 508 101 HOH HOH . J 3 HOH A 109 509 78 HOH HOH . J 3 HOH A 110 510 71 HOH HOH . K 3 HOH B 1 401 163 HOH HOH . K 3 HOH B 2 402 151 HOH HOH . K 3 HOH B 3 403 142 HOH HOH . K 3 HOH B 4 404 171 HOH HOH . K 3 HOH B 5 405 174 HOH HOH . K 3 HOH B 6 406 175 HOH HOH . K 3 HOH B 7 407 169 HOH HOH . K 3 HOH B 8 408 180 HOH HOH . K 3 HOH B 9 409 154 HOH HOH . K 3 HOH B 10 410 108 HOH HOH . K 3 HOH B 11 411 115 HOH HOH . K 3 HOH B 12 412 170 HOH HOH . K 3 HOH B 13 413 27 HOH HOH . K 3 HOH B 14 414 134 HOH HOH . K 3 HOH B 15 415 147 HOH HOH . K 3 HOH B 16 416 129 HOH HOH . K 3 HOH B 17 417 128 HOH HOH . K 3 HOH B 18 418 31 HOH HOH . K 3 HOH B 19 419 16 HOH HOH . K 3 HOH B 20 420 5 HOH HOH . K 3 HOH B 21 421 110 HOH HOH . K 3 HOH B 22 422 192 HOH HOH . K 3 HOH B 23 423 29 HOH HOH . K 3 HOH B 24 424 106 HOH HOH . K 3 HOH B 25 425 2 HOH HOH . K 3 HOH B 26 426 118 HOH HOH . K 3 HOH B 27 427 49 HOH HOH . K 3 HOH B 28 428 92 HOH HOH . K 3 HOH B 29 429 57 HOH HOH . K 3 HOH B 30 430 187 HOH HOH . K 3 HOH B 31 431 28 HOH HOH . K 3 HOH B 32 432 97 HOH HOH . K 3 HOH B 33 433 56 HOH HOH . K 3 HOH B 34 434 52 HOH HOH . K 3 HOH B 35 435 189 HOH HOH . K 3 HOH B 36 436 48 HOH HOH . K 3 HOH B 37 437 36 HOH HOH . K 3 HOH B 38 438 105 HOH HOH . K 3 HOH B 39 439 63 HOH HOH . K 3 HOH B 40 440 122 HOH HOH . K 3 HOH B 41 441 69 HOH HOH . K 3 HOH B 42 442 65 HOH HOH . K 3 HOH B 43 443 168 HOH HOH . K 3 HOH B 44 444 8 HOH HOH . K 3 HOH B 45 445 43 HOH HOH . K 3 HOH B 46 446 46 HOH HOH . K 3 HOH B 47 447 190 HOH HOH . K 3 HOH B 48 448 40 HOH HOH . K 3 HOH B 49 449 61 HOH HOH . K 3 HOH B 50 450 162 HOH HOH . K 3 HOH B 51 451 30 HOH HOH . K 3 HOH B 52 452 60 HOH HOH . K 3 HOH B 53 453 114 HOH HOH . K 3 HOH B 54 454 34 HOH HOH . K 3 HOH B 55 455 67 HOH HOH . K 3 HOH B 56 456 103 HOH HOH . K 3 HOH B 57 457 44 HOH HOH . K 3 HOH B 58 458 81 HOH HOH . K 3 HOH B 59 459 12 HOH HOH . K 3 HOH B 60 460 10 HOH HOH . K 3 HOH B 61 461 100 HOH HOH . K 3 HOH B 62 462 159 HOH HOH . K 3 HOH B 63 463 178 HOH HOH . K 3 HOH B 64 464 73 HOH HOH . K 3 HOH B 65 465 98 HOH HOH . K 3 HOH B 66 466 167 HOH HOH . K 3 HOH B 67 467 74 HOH HOH . K 3 HOH B 68 468 102 HOH HOH . K 3 HOH B 69 469 26 HOH HOH . K 3 HOH B 70 470 42 HOH HOH . K 3 HOH B 71 471 68 HOH HOH . K 3 HOH B 72 472 95 HOH HOH . K 3 HOH B 73 473 59 HOH HOH . K 3 HOH B 74 474 88 HOH HOH . K 3 HOH B 75 475 104 HOH HOH . K 3 HOH B 76 476 70 HOH HOH . K 3 HOH B 77 477 75 HOH HOH . K 3 HOH B 78 478 107 HOH HOH . K 3 HOH B 79 479 179 HOH HOH . K 3 HOH B 80 480 77 HOH HOH . K 3 HOH B 81 481 32 HOH HOH . K 3 HOH B 82 482 91 HOH HOH . K 3 HOH B 83 483 193 HOH HOH . K 3 HOH B 84 484 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 2 -22.941 16.68 15.509 1 47.65 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . H 2 -22.235 16.921 16.732 1 47.55 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . H 2 -22.681 15.247 15.086 1 47 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . H 2 -23.553 14.833 14.028 1 46.59 ? O2 EDO 302 B 1 HETATM 5 H H11 EDO . . . H 2 -24.012 16.838 15.658 1 57.18 ? H11 EDO 302 B 1 HETATM 6 H H12 EDO . . . H 2 -22.595 17.368 14.735 1 57.18 ? H12 EDO 302 B 1 HETATM 7 H HO1 EDO . . . H 2 -22.389 17.832 17.019 1 57.06 ? HO1 EDO 302 B 1 HETATM 8 H H21 EDO . . . H 2 -21.644 15.152 14.756 1 56.4 ? H21 EDO 302 B 1 HETATM 9 H H22 EDO . . . H 2 -22.817 14.587 15.945 1 56.4 ? H22 EDO 302 B 1 HETATM 10 H HO2 EDO . . . H 2 -23.356 13.917 13.788 1 55.91 ? HO2 EDO 302 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #