data_5M35 # _model_server_result.job_id mblw08uexbDCfqYlpnWojA _model_server_result.datetime_utc '2024-12-21 18:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5M35 # _exptl.entry_id 5M35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M35 _cell.length_a 72.221 _cell.length_b 104.075 _cell.length_c 114.451 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 23 A ALA 24 1_555 A N CSO 24 A CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSO 24 A CSO 25 1_555 A N MET 25 A MET 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C ALA 23 B ALA 24 1_555 B N CSO 24 B CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CSO 24 B CSO 25 1_555 B N MET 25 B MET 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C PRO 5 C PRO 215 1_555 C N SEP 6 C SEP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 C C SEP 6 C SEP 216 1_555 C N MET 7 C MET 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 D C PRO 3 D PRO 215 1_555 D N SEP 4 D SEP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C SEP 4 D SEP 216 1_555 D N MET 5 D MET 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 158 n n C1 C2 GOL sing 159 n n C1 H11 GOL sing 160 n n C1 H12 GOL sing 161 n n O1 HO1 GOL sing 162 n n C2 O2 GOL sing 163 n n C2 C3 GOL sing 164 n n C2 H2 GOL sing 165 n n O2 HO2 GOL sing 166 n n C3 O3 GOL sing 167 n n C3 H31 GOL sing 168 n n C3 H32 GOL sing 169 n n O3 HO3 GOL sing 170 n n # _atom_sites.entry_id 5M35 _atom_sites.fract_transf_matrix[1][1] 0.013846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 301 1 GOL GOL . F 5 BEZ A 1 302 2 BEZ BEZ . G 4 GOL B 1 301 2 GOL GOL . H 5 BEZ B 1 302 1 BEZ BEZ . I 6 HOH A 1 401 54 HOH HOH . I 6 HOH A 2 402 55 HOH HOH . I 6 HOH A 3 403 31 HOH HOH . I 6 HOH A 4 404 33 HOH HOH . I 6 HOH A 5 405 111 HOH HOH . I 6 HOH A 6 406 23 HOH HOH . I 6 HOH A 7 407 50 HOH HOH . I 6 HOH A 8 408 109 HOH HOH . I 6 HOH A 9 409 24 HOH HOH . I 6 HOH A 10 410 30 HOH HOH . I 6 HOH A 11 411 107 HOH HOH . I 6 HOH A 12 412 37 HOH HOH . I 6 HOH A 13 413 25 HOH HOH . I 6 HOH A 14 414 22 HOH HOH . I 6 HOH A 15 415 27 HOH HOH . I 6 HOH A 16 416 47 HOH HOH . I 6 HOH A 17 417 112 HOH HOH . I 6 HOH A 18 418 28 HOH HOH . I 6 HOH A 19 419 35 HOH HOH . I 6 HOH A 20 420 48 HOH HOH . I 6 HOH A 21 421 6 HOH HOH . I 6 HOH A 22 422 46 HOH HOH . I 6 HOH A 23 423 29 HOH HOH . I 6 HOH A 24 424 44 HOH HOH . I 6 HOH A 25 425 38 HOH HOH . I 6 HOH A 26 426 13 HOH HOH . I 6 HOH A 27 427 36 HOH HOH . I 6 HOH A 28 428 12 HOH HOH . I 6 HOH A 29 429 108 HOH HOH . I 6 HOH A 30 430 52 HOH HOH . I 6 HOH A 31 431 119 HOH HOH . I 6 HOH A 32 432 2 HOH HOH . I 6 HOH A 33 433 110 HOH HOH . I 6 HOH A 34 434 49 HOH HOH . I 6 HOH A 35 435 34 HOH HOH . I 6 HOH A 36 436 10 HOH HOH . I 6 HOH A 37 437 18 HOH HOH . I 6 HOH A 38 438 45 HOH HOH . I 6 HOH A 39 439 16 HOH HOH . I 6 HOH A 40 440 15 HOH HOH . I 6 HOH A 41 441 5 HOH HOH . I 6 HOH A 42 442 14 HOH HOH . I 6 HOH A 43 443 11 HOH HOH . I 6 HOH A 44 444 32 HOH HOH . I 6 HOH A 45 445 26 HOH HOH . I 6 HOH A 46 446 51 HOH HOH . I 6 HOH A 47 447 8 HOH HOH . I 6 HOH A 48 448 21 HOH HOH . I 6 HOH A 49 449 53 HOH HOH . I 6 HOH A 50 450 39 HOH HOH . I 6 HOH A 51 451 41 HOH HOH . I 6 HOH A 52 452 4 HOH HOH . I 6 HOH A 53 453 40 HOH HOH . I 6 HOH A 54 454 7 HOH HOH . I 6 HOH A 55 455 43 HOH HOH . J 6 HOH B 1 401 117 HOH HOH . J 6 HOH B 2 402 113 HOH HOH . J 6 HOH B 3 403 82 HOH HOH . J 6 HOH B 4 404 57 HOH HOH . J 6 HOH B 5 405 72 HOH HOH . J 6 HOH B 6 406 95 HOH HOH . J 6 HOH B 7 407 66 HOH HOH . J 6 HOH B 8 408 62 HOH HOH . J 6 HOH B 9 409 114 HOH HOH . J 6 HOH B 10 410 81 HOH HOH . J 6 HOH B 11 411 99 HOH HOH . J 6 HOH B 12 412 84 HOH HOH . J 6 HOH B 13 413 91 HOH HOH . J 6 HOH B 14 414 77 HOH HOH . J 6 HOH B 15 415 94 HOH HOH . J 6 HOH B 16 416 105 HOH HOH . J 6 HOH B 17 417 64 HOH HOH . J 6 HOH B 18 418 93 HOH HOH . J 6 HOH B 19 419 78 HOH HOH . J 6 HOH B 20 420 88 HOH HOH . J 6 HOH B 21 421 102 HOH HOH . J 6 HOH B 22 422 86 HOH HOH . J 6 HOH B 23 423 60 HOH HOH . J 6 HOH B 24 424 59 HOH HOH . J 6 HOH B 25 425 106 HOH HOH . J 6 HOH B 26 426 115 HOH HOH . J 6 HOH B 27 427 68 HOH HOH . J 6 HOH B 28 428 116 HOH HOH . J 6 HOH B 29 429 92 HOH HOH . J 6 HOH B 30 430 90 HOH HOH . J 6 HOH B 31 431 69 HOH HOH . J 6 HOH B 32 432 118 HOH HOH . J 6 HOH B 33 433 67 HOH HOH . J 6 HOH B 34 434 65 HOH HOH . J 6 HOH B 35 435 83 HOH HOH . J 6 HOH B 36 436 98 HOH HOH . J 6 HOH B 37 437 63 HOH HOH . J 6 HOH B 38 438 3 HOH HOH . J 6 HOH B 39 439 73 HOH HOH . J 6 HOH B 40 440 87 HOH HOH . J 6 HOH B 41 441 1 HOH HOH . J 6 HOH B 42 442 56 HOH HOH . J 6 HOH B 43 443 70 HOH HOH . J 6 HOH B 44 444 80 HOH HOH . J 6 HOH B 45 445 61 HOH HOH . J 6 HOH B 46 446 58 HOH HOH . J 6 HOH B 47 447 17 HOH HOH . J 6 HOH B 48 448 85 HOH HOH . J 6 HOH B 49 449 100 HOH HOH . J 6 HOH B 50 450 79 HOH HOH . J 6 HOH B 51 451 71 HOH HOH . J 6 HOH B 52 452 42 HOH HOH . J 6 HOH B 53 453 76 HOH HOH . J 6 HOH B 54 454 103 HOH HOH . J 6 HOH B 55 455 89 HOH HOH . J 6 HOH B 56 456 101 HOH HOH . K 6 HOH C 1 301 75 HOH HOH . K 6 HOH C 2 302 19 HOH HOH . K 6 HOH C 3 303 20 HOH HOH . K 6 HOH C 4 304 120 HOH HOH . K 6 HOH C 5 305 121 HOH HOH . L 6 HOH D 1 301 96 HOH HOH . L 6 HOH D 2 302 97 HOH HOH . L 6 HOH D 3 303 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 16.483 -8.524 -11.576 1 83.57 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . E 4 16.803 -7.13 -11.462 1 79.31 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . E 4 16.805 -9.265 -10.262 1 84.17 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . E 4 18.12 -8.943 -9.858 1 85.1 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . E 4 16.593 -10.795 -10.202 1 83.95 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . E 4 15.305 -11.191 -10.64 1 84.47 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #