data_5M36 # _model_server_result.job_id pIcAfygZuvLC5b0gKrxN1Q _model_server_result.datetime_utc '2024-12-22 01:28:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 5M36 # _exptl.entry_id 5M36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M36 _cell.length_a 71.52 _cell.length_b 102.36 _cell.length_c 112.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 23 A ALA 24 1_555 A N CSO 24 A CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CSO 24 A CSO 25 1_555 A N MET 25 A MET 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C ALA 23 B ALA 24 1_555 B N CSO 24 B CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSO 24 B CSO 25 1_555 B N MET 25 B MET 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 C C PRO 9 C PRO 215 1_555 C N SEP 10 C SEP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C C SEP 10 C SEP 216 1_555 C N MET 11 C MET 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 D C PRO 9 D PRO 215 1_555 D N SEP 10 D SEP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 D C SEP 10 D SEP 216 1_555 D N MET 11 D MET 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 166 n n C O2 BEZ sing 167 n n C C1 BEZ sing 168 n n O2 HO2 BEZ sing 169 n n C1 C2 BEZ doub 170 n y C1 C6 BEZ sing 171 n y C2 C3 BEZ sing 172 n y C2 H2 BEZ sing 173 n n C3 C4 BEZ doub 174 n y C3 H3 BEZ sing 175 n n C4 C5 BEZ sing 176 n y C4 H4 BEZ sing 177 n n C5 C6 BEZ doub 178 n y C5 H5 BEZ sing 179 n n C6 H6 BEZ sing 180 n n # _atom_sites.entry_id 5M36 _atom_sites.fract_transf_matrix[1][1] 0.013982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 9SZ A 1 301 10 9SZ 9SZ . F 3 9SZ A 1 302 11 9SZ 9SZ . G 4 BEZ A 1 303 1 BEZ BEZ . H 5 GOL A 1 304 2 GOL GOL . I 5 GOL A 1 305 3 GOL GOL . J 3 9SZ B 1 301 8 9SZ 9SZ . K 4 BEZ B 1 302 2 BEZ BEZ . L 5 GOL B 1 303 1 GOL GOL . M 3 9SZ C 1 301 9 9SZ 9SZ . N 6 HOH A 1 401 57 HOH HOH . N 6 HOH A 2 402 123 HOH HOH . N 6 HOH A 3 403 13 HOH HOH . N 6 HOH A 4 404 85 HOH HOH . N 6 HOH A 5 405 27 HOH HOH . N 6 HOH A 6 406 95 HOH HOH . N 6 HOH A 7 407 37 HOH HOH . N 6 HOH A 8 408 14 HOH HOH . N 6 HOH A 9 409 68 HOH HOH . N 6 HOH A 10 410 103 HOH HOH . N 6 HOH A 11 411 43 HOH HOH . N 6 HOH A 12 412 19 HOH HOH . N 6 HOH A 13 413 25 HOH HOH . N 6 HOH A 14 414 11 HOH HOH . N 6 HOH A 15 415 8 HOH HOH . N 6 HOH A 16 416 104 HOH HOH . N 6 HOH A 17 417 109 HOH HOH . N 6 HOH A 18 418 111 HOH HOH . N 6 HOH A 19 419 7 HOH HOH . N 6 HOH A 20 420 119 HOH HOH . N 6 HOH A 21 421 6 HOH HOH . N 6 HOH A 22 422 48 HOH HOH . N 6 HOH A 23 423 122 HOH HOH . N 6 HOH A 24 424 20 HOH HOH . N 6 HOH A 25 425 124 HOH HOH . N 6 HOH A 26 426 121 HOH HOH . N 6 HOH A 27 427 22 HOH HOH . N 6 HOH A 28 428 118 HOH HOH . O 6 HOH B 1 401 64 HOH HOH . O 6 HOH B 2 402 107 HOH HOH . O 6 HOH B 3 403 38 HOH HOH . O 6 HOH B 4 404 40 HOH HOH . O 6 HOH B 5 405 29 HOH HOH . O 6 HOH B 6 406 74 HOH HOH . O 6 HOH B 7 407 63 HOH HOH . O 6 HOH B 8 408 80 HOH HOH . O 6 HOH B 9 409 108 HOH HOH . O 6 HOH B 10 410 4 HOH HOH . O 6 HOH B 11 411 30 HOH HOH . O 6 HOH B 12 412 42 HOH HOH . O 6 HOH B 13 413 49 HOH HOH . O 6 HOH B 14 414 41 HOH HOH . O 6 HOH B 15 415 60 HOH HOH . O 6 HOH B 16 416 3 HOH HOH . O 6 HOH B 17 417 12 HOH HOH . O 6 HOH B 18 418 1 HOH HOH . O 6 HOH B 19 419 114 HOH HOH . O 6 HOH B 20 420 39 HOH HOH . O 6 HOH B 21 421 15 HOH HOH . O 6 HOH B 22 422 61 HOH HOH . O 6 HOH B 23 423 112 HOH HOH . O 6 HOH B 24 424 54 HOH HOH . O 6 HOH B 25 425 24 HOH HOH . P 6 HOH C 1 401 75 HOH HOH . P 6 HOH C 2 402 2 HOH HOH . P 6 HOH C 3 403 67 HOH HOH . P 6 HOH C 4 404 18 HOH HOH . P 6 HOH C 5 405 81 HOH HOH . P 6 HOH C 6 406 5 HOH HOH . P 6 HOH C 7 407 115 HOH HOH . P 6 HOH C 8 408 84 HOH HOH . P 6 HOH C 9 409 86 HOH HOH . P 6 HOH C 10 410 51 HOH HOH . P 6 HOH C 11 411 110 HOH HOH . P 6 HOH C 12 412 120 HOH HOH . Q 6 HOH D 1 301 21 HOH HOH . Q 6 HOH D 2 302 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . G 4 -3.607 -26.544 10.684 0.5 76.11 ? C BEZ 303 A 1 HETATM 2 O O1 BEZ . . . G 4 -4.151 -27.457 10.027 0.5 77.41 ? O1 BEZ 303 A 1 HETATM 3 O O2 BEZ . . . G 4 -3.119 -25.532 10.141 0.5 73.94 ? O2 BEZ 303 A 1 HETATM 4 C C1 BEZ . . . G 4 -3.539 -26.664 12.17 0.5 76.97 ? C1 BEZ 303 A 1 HETATM 5 C C2 BEZ . . . G 4 -3.584 -27.913 12.764 0.5 76.76 ? C2 BEZ 303 A 1 HETATM 6 C C3 BEZ . . . G 4 -3.525 -28.017 14.144 0.5 78.06 ? C3 BEZ 303 A 1 HETATM 7 C C4 BEZ . . . G 4 -3.42 -26.873 14.925 0.5 77.96 ? C4 BEZ 303 A 1 HETATM 8 C C5 BEZ . . . G 4 -3.372 -25.624 14.326 0.5 78.01 ? C5 BEZ 303 A 1 HETATM 9 C C6 BEZ . . . G 4 -3.433 -25.519 12.945 0.5 78.31 ? C6 BEZ 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #