data_5M36
#
_model_server_result.job_id            RaAlnPThtqvIl8raiKlSvA 
_model_server_result.datetime_utc      '2024-11-05 12:38:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m36 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":305}' 
#
_entry.id    5M36 
#
_exptl.entry_id    5M36 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M36 
_cell.length_a            71.52 
_cell.length_b            102.36 
_cell.length_c            112.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M36 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 23 A ALA 24 1_555 A N CSO 24 A CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CSO 24 A CSO 25 1_555 A N MET 25 A MET 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C ALA 23 B ALA 24 1_555 B N CSO 24 B CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C CSO 24 B CSO 25 1_555 B N MET 25 B MET 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 C C PRO 9 C PRO 215 1_555 C N SEP 10 C SEP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 C C SEP 10 C SEP 216 1_555 C N MET 11 C MET 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 D C PRO 9 D PRO 215 1_555 D N SEP 10 D SEP 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 D C SEP 10 D SEP 216 1_555 D N MET 11 D MET 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 254 n n 
C1 C2 GOL sing 255 n n 
C1 H11 GOL sing 256 n n 
C1 H12 GOL sing 257 n n 
O1 HO1 GOL sing 258 n n 
C2 O2 GOL sing 259 n n 
C2 C3 GOL sing 260 n n 
C2 H2 GOL sing 261 n n 
O2 HO2 GOL sing 262 n n 
C3 O3 GOL sing 263 n n 
C3 H31 GOL sing 264 n n 
C3 H32 GOL sing 265 n n 
O3 HO3 GOL sing 266 n n 
#
_atom_sites.entry_id                     5M36 
_atom_sites.fract_transf_matrix[1][1]    0.013982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008864 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 9SZ A 1 301 10 9SZ 9SZ . 
F 3 9SZ A 1 302 11 9SZ 9SZ . 
G 4 BEZ A 1 303 1 BEZ BEZ . 
H 5 GOL A 1 304 2 GOL GOL . 
I 5 GOL A 1 305 3 GOL GOL . 
J 3 9SZ B 1 301 8 9SZ 9SZ . 
K 4 BEZ B 1 302 2 BEZ BEZ . 
L 5 GOL B 1 303 1 GOL GOL . 
M 3 9SZ C 1 301 9 9SZ 9SZ . 
N 6 HOH A 1 401 57 HOH HOH . 
N 6 HOH A 2 402 123 HOH HOH . 
N 6 HOH A 3 403 13 HOH HOH . 
N 6 HOH A 4 404 85 HOH HOH . 
N 6 HOH A 5 405 27 HOH HOH . 
N 6 HOH A 6 406 95 HOH HOH . 
N 6 HOH A 7 407 37 HOH HOH . 
N 6 HOH A 8 408 14 HOH HOH . 
N 6 HOH A 9 409 68 HOH HOH . 
N 6 HOH A 10 410 103 HOH HOH . 
N 6 HOH A 11 411 43 HOH HOH . 
N 6 HOH A 12 412 19 HOH HOH . 
N 6 HOH A 13 413 25 HOH HOH . 
N 6 HOH A 14 414 11 HOH HOH . 
N 6 HOH A 15 415 8 HOH HOH . 
N 6 HOH A 16 416 104 HOH HOH . 
N 6 HOH A 17 417 109 HOH HOH . 
N 6 HOH A 18 418 111 HOH HOH . 
N 6 HOH A 19 419 7 HOH HOH . 
N 6 HOH A 20 420 119 HOH HOH . 
N 6 HOH A 21 421 6 HOH HOH . 
N 6 HOH A 22 422 48 HOH HOH . 
N 6 HOH A 23 423 122 HOH HOH . 
N 6 HOH A 24 424 20 HOH HOH . 
N 6 HOH A 25 425 124 HOH HOH . 
N 6 HOH A 26 426 121 HOH HOH . 
N 6 HOH A 27 427 22 HOH HOH . 
N 6 HOH A 28 428 118 HOH HOH . 
O 6 HOH B 1 401 64 HOH HOH . 
O 6 HOH B 2 402 107 HOH HOH . 
O 6 HOH B 3 403 38 HOH HOH . 
O 6 HOH B 4 404 40 HOH HOH . 
O 6 HOH B 5 405 29 HOH HOH . 
O 6 HOH B 6 406 74 HOH HOH . 
O 6 HOH B 7 407 63 HOH HOH . 
O 6 HOH B 8 408 80 HOH HOH . 
O 6 HOH B 9 409 108 HOH HOH . 
O 6 HOH B 10 410 4 HOH HOH . 
O 6 HOH B 11 411 30 HOH HOH . 
O 6 HOH B 12 412 42 HOH HOH . 
O 6 HOH B 13 413 49 HOH HOH . 
O 6 HOH B 14 414 41 HOH HOH . 
O 6 HOH B 15 415 60 HOH HOH . 
O 6 HOH B 16 416 3 HOH HOH . 
O 6 HOH B 17 417 12 HOH HOH . 
O 6 HOH B 18 418 1 HOH HOH . 
O 6 HOH B 19 419 114 HOH HOH . 
O 6 HOH B 20 420 39 HOH HOH . 
O 6 HOH B 21 421 15 HOH HOH . 
O 6 HOH B 22 422 61 HOH HOH . 
O 6 HOH B 23 423 112 HOH HOH . 
O 6 HOH B 24 424 54 HOH HOH . 
O 6 HOH B 25 425 24 HOH HOH . 
P 6 HOH C 1 401 75 HOH HOH . 
P 6 HOH C 2 402 2 HOH HOH . 
P 6 HOH C 3 403 67 HOH HOH . 
P 6 HOH C 4 404 18 HOH HOH . 
P 6 HOH C 5 405 81 HOH HOH . 
P 6 HOH C 6 406 5 HOH HOH . 
P 6 HOH C 7 407 115 HOH HOH . 
P 6 HOH C 8 408 84 HOH HOH . 
P 6 HOH C 9 409 86 HOH HOH . 
P 6 HOH C 10 410 51 HOH HOH . 
P 6 HOH C 11 411 110 HOH HOH . 
P 6 HOH C 12 412 120 HOH HOH . 
Q 6 HOH D 1 301 21 HOH HOH . 
Q 6 HOH D 2 302 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 3.836 -28.192 6.745 1 114.49 ? C1 GOL 305 A 1 
HETATM 2 O O1 GOL . . . I 5 2.967 -27.71 5.712 1 110.32 ? O1 GOL 305 A 1 
HETATM 3 C C2 GOL . . . I 5 4.436 -27.011 7.511 1 118.24 ? C2 GOL 305 A 1 
HETATM 4 O O2 GOL . . . I 5 5.49 -26.409 6.745 1 113.07 ? O2 GOL 305 A 1 
HETATM 5 C C3 GOL . . . I 5 4.97 -27.483 8.867 1 118.57 ? C3 GOL 305 A 1 
HETATM 6 O O3 GOL . . . I 5 5.643 -26.423 9.571 1 115.75 ? O3 GOL 305 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#