data_5M3C # _model_server_result.job_id JK9_UWnKykgsBwPKTn92Og _model_server_result.datetime_utc '2024-10-28 02:27:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1303}' # _entry.id 5M3C # _exptl.entry_id 5M3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M3C _cell.length_a 122.307 _cell.length_b 133.931 _cell.length_c 69.141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 41 A ASP 846 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OD2 ASP 41 A ASP 846 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc3 A OD2 ASP 41 A ASP 846 1_555 E CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc4 A O LEU 42 A LEU 847 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 A OD2 ASP 84 A ASP 889 1_555 D CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 A OD1 ASP 84 A ASP 889 1_555 E CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc7 A OE2 GLU 85 A GLU 890 1_555 E CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc8 A OE2 GLU 210 A GLU 1015 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc9 A OD1 ASN 269 A ASN 1074 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc10 A OE1 GLU 301 A GLU 1106 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 A OD2 ASP 331 A ASP 1136 1_555 C CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc12 D CA CA . A CA 1302 1_555 F O2G GTP . A GTP 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc13 D CA CA . A CA 1302 1_555 F O2B GTP . A GTP 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc14 D CA CA . A CA 1302 1_555 F O2A GTP . A GTP 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc15 E CA CA . A CA 1303 1_555 F O2A GTP . A GTP 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc16 B OD1 ASP 41 B ASP 846 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc17 B O LEU 42 B LEU 847 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 B OD2 ASP 84 B ASP 889 1_555 G CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc19 B OE2 GLU 210 B GLU 1015 1_555 H CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc20 B OD1 ASN 269 B ASN 1074 1_555 H CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc21 B OE1 GLU 301 B GLU 1106 1_555 H CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc22 B OD2 ASP 331 B ASP 1136 1_555 H CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc23 G CA CA . B CA 1301 1_555 I O3G GTP . B GTP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc24 G CA CA . B CA 1301 1_555 I O2A GTP . B GTP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc25 G CA CA . B CA 1301 1_555 I O2B GTP . B GTP 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M3C _atom_sites.fract_transf_matrix[1][1] 0.008176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 1301 1 CA CA . D 2 CA A 1 1302 4 CA CA . E 2 CA A 1 1303 5 CA CA . F 3 GTP A 1 1304 2 GTP GTP . G 2 CA B 1 1301 2 CA CA . H 2 CA B 1 1302 3 CA CA . I 3 GTP B 1 1303 1 GTP GTP . J 4 HOH A 1 1401 5 HOH HOH . J 4 HOH A 2 1402 15 HOH HOH . J 4 HOH A 3 1403 21 HOH HOH . J 4 HOH A 4 1404 17 HOH HOH . J 4 HOH A 5 1405 4 HOH HOH . J 4 HOH A 6 1406 3 HOH HOH . J 4 HOH A 7 1407 14 HOH HOH . K 4 HOH B 1 1401 18 HOH HOH . K 4 HOH B 2 1402 11 HOH HOH . K 4 HOH B 3 1403 20 HOH HOH . K 4 HOH B 4 1404 8 HOH HOH . K 4 HOH B 5 1405 19 HOH HOH . K 4 HOH B 6 1406 9 HOH HOH . K 4 HOH B 7 1407 7 HOH HOH . K 4 HOH B 8 1408 10 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 44.33 _atom_site.Cartn_y 30.53 _atom_site.Cartn_z 33.901 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #