data_5M3O # _model_server_result.job_id yLeDqpGF2D2ej_mjvF8lSA _model_server_result.datetime_utc '2024-11-03 23:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5M3O # _exptl.entry_id 5M3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M3O _cell.length_a 84.291 _cell.length_b 84.291 _cell.length_c 127.978 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -42.1455 -72.998147 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 42.1455 -72.998147 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 205 n n O1 C6 MES sing 206 n n C2 C3 MES sing 207 n n C2 H21 MES sing 208 n n C2 H22 MES sing 209 n n C3 N4 MES sing 210 n n C3 H31 MES sing 211 n n C3 H32 MES sing 212 n n N4 C5 MES sing 213 n n N4 C7 MES sing 214 n n N4 HN4 MES sing 215 n n C5 C6 MES sing 216 n n C5 H51 MES sing 217 n n C5 H52 MES sing 218 n n C6 H61 MES sing 219 n n C6 H62 MES sing 220 n n C7 C8 MES sing 221 n n C7 H71 MES sing 222 n n C7 H72 MES sing 223 n n C8 S MES sing 224 n n C8 H81 MES sing 225 n n C8 H82 MES sing 226 n n S O1S MES doub 227 n n S O2S MES doub 228 n n S O3S MES sing 229 n n # _atom_sites.entry_id 5M3O _atom_sites.fract_transf_matrix[1][1] 0.011864 _atom_sites.fract_transf_matrix[1][2] 0.00685 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 501 460 MES MES . C 3 HOH A 1 601 476 HOH HOH . C 3 HOH A 2 602 477 HOH HOH . C 3 HOH A 3 603 474 HOH HOH . C 3 HOH A 4 604 561 HOH HOH . C 3 HOH A 5 605 485 HOH HOH . C 3 HOH A 6 606 535 HOH HOH . C 3 HOH A 7 607 545 HOH HOH . C 3 HOH A 8 608 493 HOH HOH . C 3 HOH A 9 609 530 HOH HOH . C 3 HOH A 10 610 564 HOH HOH . C 3 HOH A 11 611 469 HOH HOH . C 3 HOH A 12 612 582 HOH HOH . C 3 HOH A 13 613 565 HOH HOH . C 3 HOH A 14 614 540 HOH HOH . C 3 HOH A 15 615 533 HOH HOH . C 3 HOH A 16 616 516 HOH HOH . C 3 HOH A 17 617 534 HOH HOH . C 3 HOH A 18 618 532 HOH HOH . C 3 HOH A 19 619 468 HOH HOH . C 3 HOH A 20 620 472 HOH HOH . C 3 HOH A 21 621 566 HOH HOH . C 3 HOH A 22 622 464 HOH HOH . C 3 HOH A 23 623 479 HOH HOH . C 3 HOH A 24 624 462 HOH HOH . C 3 HOH A 25 625 492 HOH HOH . C 3 HOH A 26 626 461 HOH HOH . C 3 HOH A 27 627 549 HOH HOH . C 3 HOH A 28 628 555 HOH HOH . C 3 HOH A 29 629 524 HOH HOH . C 3 HOH A 30 630 473 HOH HOH . C 3 HOH A 31 631 495 HOH HOH . C 3 HOH A 32 632 498 HOH HOH . C 3 HOH A 33 633 482 HOH HOH . C 3 HOH A 34 634 570 HOH HOH . C 3 HOH A 35 635 487 HOH HOH . C 3 HOH A 36 636 496 HOH HOH . C 3 HOH A 37 637 509 HOH HOH . C 3 HOH A 38 638 502 HOH HOH . C 3 HOH A 39 639 471 HOH HOH . C 3 HOH A 40 640 517 HOH HOH . C 3 HOH A 41 641 562 HOH HOH . C 3 HOH A 42 642 467 HOH HOH . C 3 HOH A 43 643 504 HOH HOH . C 3 HOH A 44 644 577 HOH HOH . C 3 HOH A 45 645 527 HOH HOH . C 3 HOH A 46 646 560 HOH HOH . C 3 HOH A 47 647 463 HOH HOH . C 3 HOH A 48 648 506 HOH HOH . C 3 HOH A 49 649 536 HOH HOH . C 3 HOH A 50 650 503 HOH HOH . C 3 HOH A 51 651 556 HOH HOH . C 3 HOH A 52 652 499 HOH HOH . C 3 HOH A 53 653 489 HOH HOH . C 3 HOH A 54 654 547 HOH HOH . C 3 HOH A 55 655 550 HOH HOH . C 3 HOH A 56 656 544 HOH HOH . C 3 HOH A 57 657 465 HOH HOH . C 3 HOH A 58 658 511 HOH HOH . C 3 HOH A 59 659 572 HOH HOH . C 3 HOH A 60 660 568 HOH HOH . C 3 HOH A 61 661 480 HOH HOH . C 3 HOH A 62 662 520 HOH HOH . C 3 HOH A 63 663 513 HOH HOH . C 3 HOH A 64 664 486 HOH HOH . C 3 HOH A 65 665 512 HOH HOH . C 3 HOH A 66 666 505 HOH HOH . C 3 HOH A 67 667 507 HOH HOH . C 3 HOH A 68 668 521 HOH HOH . C 3 HOH A 69 669 466 HOH HOH . C 3 HOH A 70 670 497 HOH HOH . C 3 HOH A 71 671 470 HOH HOH . C 3 HOH A 72 672 484 HOH HOH . C 3 HOH A 73 673 579 HOH HOH . C 3 HOH A 74 674 481 HOH HOH . C 3 HOH A 75 675 515 HOH HOH . C 3 HOH A 76 676 538 HOH HOH . C 3 HOH A 77 677 483 HOH HOH . C 3 HOH A 78 678 551 HOH HOH . C 3 HOH A 79 679 573 HOH HOH . C 3 HOH A 80 680 491 HOH HOH . C 3 HOH A 81 681 531 HOH HOH . C 3 HOH A 82 682 488 HOH HOH . C 3 HOH A 83 683 519 HOH HOH . C 3 HOH A 84 684 529 HOH HOH . C 3 HOH A 85 685 569 HOH HOH . C 3 HOH A 86 686 475 HOH HOH . C 3 HOH A 87 687 558 HOH HOH . C 3 HOH A 88 688 543 HOH HOH . C 3 HOH A 89 689 478 HOH HOH . C 3 HOH A 90 690 490 HOH HOH . C 3 HOH A 91 691 541 HOH HOH . C 3 HOH A 92 692 580 HOH HOH . C 3 HOH A 93 693 501 HOH HOH . C 3 HOH A 94 694 518 HOH HOH . C 3 HOH A 95 695 525 HOH HOH . C 3 HOH A 96 696 581 HOH HOH . C 3 HOH A 97 697 567 HOH HOH . C 3 HOH A 98 698 548 HOH HOH . C 3 HOH A 99 699 553 HOH HOH . C 3 HOH A 100 700 557 HOH HOH . C 3 HOH A 101 701 537 HOH HOH . C 3 HOH A 102 702 575 HOH HOH . C 3 HOH A 103 703 500 HOH HOH . C 3 HOH A 104 704 508 HOH HOH . C 3 HOH A 105 705 578 HOH HOH . C 3 HOH A 106 706 546 HOH HOH . C 3 HOH A 107 707 554 HOH HOH . C 3 HOH A 108 708 576 HOH HOH . C 3 HOH A 109 709 514 HOH HOH . C 3 HOH A 110 710 563 HOH HOH . C 3 HOH A 111 711 528 HOH HOH . C 3 HOH A 112 712 571 HOH HOH . C 3 HOH A 113 713 539 HOH HOH . C 3 HOH A 114 714 542 HOH HOH . C 3 HOH A 115 715 522 HOH HOH . C 3 HOH A 116 716 494 HOH HOH . C 3 HOH A 117 717 526 HOH HOH . C 3 HOH A 118 718 523 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . B 2 7.589 -50.268 -26.212 1 18.04 ? O1 MES 501 A 1 HETATM 2 C C2 MES . . . B 2 8.746 -50.989 -26.606 1 17.96 ? C2 MES 501 A 1 HETATM 3 C C3 MES . . . B 2 9.851 -50.095 -27.167 1 17.78 ? C3 MES 501 A 1 HETATM 4 N N4 MES . . . B 2 9.382 -49.212 -28.262 1 22.36 ? N4 MES 501 A 1 HETATM 5 C C5 MES . . . B 2 8.167 -48.451 -27.878 1 22.53 ? C5 MES 501 A 1 HETATM 6 C C6 MES . . . B 2 7.108 -49.288 -27.142 1 21.75 ? C6 MES 501 A 1 HETATM 7 C C7 MES . . . B 2 10.521 -48.383 -28.757 1 21.67 ? C7 MES 501 A 1 HETATM 8 C C8 MES . . . B 2 10.166 -47.111 -29.537 1 22.08 ? C8 MES 501 A 1 HETATM 9 S S MES . . . B 2 11.317 -46.633 -30.676 1 22.68 ? S MES 501 A 1 HETATM 10 O O1S MES . . . B 2 11.425 -47.681 -31.703 1 20.86 ? O1S MES 501 A 1 HETATM 11 O O2S MES . . . B 2 10.844 -45.379 -31.281 1 23.87 ? O2S MES 501 A 1 HETATM 12 O O3S MES . . . B 2 12.598 -46.443 -30.02 1 20.1 ? O3S MES 501 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #