data_5M3T # _model_server_result.job_id O0i3eUkYm_o76sIkkNSLug _model_server_result.datetime_utc '2024-10-28 02:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 5M3T # _exptl.entry_id 5M3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M3T _cell.length_a 101.3 _cell.length_b 101.3 _cell.length_c 35.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 156 1_555 A SG CYS 81 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 48 A CYS 157 1_555 A SG CYS 66 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 47 B CYS 156 1_555 B SG CYS 81 B CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 48 B CYS 157 1_555 B SG CYS 66 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 57 n n C1 C2 EDO sing 58 n n C1 H11 EDO sing 59 n n C1 H12 EDO sing 60 n n O1 HO1 EDO sing 61 n n C2 O2 EDO sing 62 n n C2 H21 EDO sing 63 n n C2 H22 EDO sing 64 n n O2 HO2 EDO sing 65 n n # _atom_sites.entry_id 5M3T _atom_sites.fract_transf_matrix[1][1] 0.009872 _atom_sites.fract_transf_matrix[1][2] 0.005699 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 301 2 CL CL . D 2 CL A 1 302 3 CL CL . E 2 CL A 1 303 4 CL CL . F 3 EDO A 1 304 2 EDO EDO . G 3 EDO A 1 305 4 EDO EDO . H 3 EDO A 1 306 5 EDO EDO . I 3 EDO B 1 301 1 EDO EDO . J 3 EDO B 1 302 3 EDO EDO . K 3 EDO B 1 303 7 EDO EDO . L 4 HOH A 1 401 4 HOH HOH . L 4 HOH A 2 402 5 HOH HOH . L 4 HOH A 3 403 1 HOH HOH . L 4 HOH A 4 404 13 HOH HOH . L 4 HOH A 5 405 3 HOH HOH . L 4 HOH A 6 406 2 HOH HOH . L 4 HOH A 7 407 15 HOH HOH . L 4 HOH A 8 408 11 HOH HOH . L 4 HOH A 9 409 14 HOH HOH . L 4 HOH A 10 410 12 HOH HOH . L 4 HOH A 11 411 17 HOH HOH . M 4 HOH B 1 401 7 HOH HOH . M 4 HOH B 2 402 6 HOH HOH . M 4 HOH B 3 403 8 HOH HOH . M 4 HOH B 4 404 16 HOH HOH . M 4 HOH B 5 405 9 HOH HOH . M 4 HOH B 6 406 19 HOH HOH . M 4 HOH B 7 407 18 HOH HOH . M 4 HOH B 8 408 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 -17.507 21.977 -3.977 1 75.33 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . J 3 -17.339 22.663 -2.728 1 79.76 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . J 3 -16.289 21.106 -4.264 1 78.91 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . J 3 -16.498 20.345 -5.46 1 77.65 ? O2 EDO 302 B 1 HETATM 5 H H11 EDO . . . J 3 -18.403 21.354 -3.936 1 90.39 ? H11 EDO 302 B 1 HETATM 6 H H12 EDO . . . J 3 -17.636 22.704 -4.781 1 90.39 ? H12 EDO 302 B 1 HETATM 7 H HO1 EDO . . . J 3 -18.115 23.213 -2.555 1 95.71 ? HO1 EDO 302 B 1 HETATM 8 H H21 EDO . . . J 3 -15.406 21.736 -4.38 1 94.7 ? H21 EDO 302 B 1 HETATM 9 H H22 EDO . . . J 3 -16.116 20.429 -3.425 1 94.7 ? H22 EDO 302 B 1 HETATM 10 H HO2 EDO . . . J 3 -15.721 19.796 -5.633 1 93.18 ? HO2 EDO 302 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 208 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #