data_5M3U
#
_model_server_result.job_id            9BhXeplKaLXf3fot5ByGhw 
_model_server_result.datetime_utc      '2024-11-23 22:27:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m3u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5M3U 
#
_exptl.entry_id    5M3U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.71 
_cell.angle_gamma         90 
_cell.entry_id            5M3U 
_cell.length_a            35.65 
_cell.length_b            106.031 
_cell.length_c            50.097 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M3U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 374 A ASP 374 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A O ASP 411 A ASP 411 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc3 A O LEU 413 A LEU 413 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc4 B O2B ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 B O1A ADP . A ADP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc6 C O2 3PG . A 3PG 502 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 D MG MG . A MG 503 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc8 D MG MG . A MG 503 1_555 G O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc9 E MG MG . A MG 504 1_555 G O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5M3U 
_atom_sites.fract_transf_matrix[1][1]    0.02805 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004295 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 501 1 ADP ADP . 
C 3 3PG A 1 502 1 3PG 3PG . 
D 4 MG A 1 503 1 MG MG . 
E 4 MG A 1 504 2 MG MG . 
F 4 MG A 1 505 4 MG MG . 
G 5 HOH A 1 601 115 HOH HOH . 
G 5 HOH A 2 602 155 HOH HOH . 
G 5 HOH A 3 603 109 HOH HOH . 
G 5 HOH A 4 604 124 HOH HOH . 
G 5 HOH A 5 605 98 HOH HOH . 
G 5 HOH A 6 606 137 HOH HOH . 
G 5 HOH A 7 607 159 HOH HOH . 
G 5 HOH A 8 608 32 HOH HOH . 
G 5 HOH A 9 609 113 HOH HOH . 
G 5 HOH A 10 610 102 HOH HOH . 
G 5 HOH A 11 611 151 HOH HOH . 
G 5 HOH A 12 612 110 HOH HOH . 
G 5 HOH A 13 613 53 HOH HOH . 
G 5 HOH A 14 614 20 HOH HOH . 
G 5 HOH A 15 615 111 HOH HOH . 
G 5 HOH A 16 616 76 HOH HOH . 
G 5 HOH A 17 617 132 HOH HOH . 
G 5 HOH A 18 618 17 HOH HOH . 
G 5 HOH A 19 619 97 HOH HOH . 
G 5 HOH A 20 620 46 HOH HOH . 
G 5 HOH A 21 621 78 HOH HOH . 
G 5 HOH A 22 622 121 HOH HOH . 
G 5 HOH A 23 623 126 HOH HOH . 
G 5 HOH A 24 624 141 HOH HOH . 
G 5 HOH A 25 625 23 HOH HOH . 
G 5 HOH A 26 626 29 HOH HOH . 
G 5 HOH A 27 627 89 HOH HOH . 
G 5 HOH A 28 628 85 HOH HOH . 
G 5 HOH A 29 629 60 HOH HOH . 
G 5 HOH A 30 630 1 HOH HOH . 
G 5 HOH A 31 631 5 HOH HOH . 
G 5 HOH A 32 632 47 HOH HOH . 
G 5 HOH A 33 633 118 HOH HOH . 
G 5 HOH A 34 634 39 HOH HOH . 
G 5 HOH A 35 635 19 HOH HOH . 
G 5 HOH A 36 636 37 HOH HOH . 
G 5 HOH A 37 637 135 HOH HOH . 
G 5 HOH A 38 638 63 HOH HOH . 
G 5 HOH A 39 639 35 HOH HOH . 
G 5 HOH A 40 640 130 HOH HOH . 
G 5 HOH A 41 641 149 HOH HOH . 
G 5 HOH A 42 642 122 HOH HOH . 
G 5 HOH A 43 643 66 HOH HOH . 
G 5 HOH A 44 644 58 HOH HOH . 
G 5 HOH A 45 645 33 HOH HOH . 
G 5 HOH A 46 646 136 HOH HOH . 
G 5 HOH A 47 647 14 HOH HOH . 
G 5 HOH A 48 648 34 HOH HOH . 
G 5 HOH A 49 649 48 HOH HOH . 
G 5 HOH A 50 650 125 HOH HOH . 
G 5 HOH A 51 651 15 HOH HOH . 
G 5 HOH A 52 652 9 HOH HOH . 
G 5 HOH A 53 653 13 HOH HOH . 
G 5 HOH A 54 654 147 HOH HOH . 
G 5 HOH A 55 655 11 HOH HOH . 
G 5 HOH A 56 656 38 HOH HOH . 
G 5 HOH A 57 657 73 HOH HOH . 
G 5 HOH A 58 658 21 HOH HOH . 
G 5 HOH A 59 659 128 HOH HOH . 
G 5 HOH A 60 660 25 HOH HOH . 
G 5 HOH A 61 661 3 HOH HOH . 
G 5 HOH A 62 662 42 HOH HOH . 
G 5 HOH A 63 663 2 HOH HOH . 
G 5 HOH A 64 664 156 HOH HOH . 
G 5 HOH A 65 665 84 HOH HOH . 
G 5 HOH A 66 666 134 HOH HOH . 
G 5 HOH A 67 667 27 HOH HOH . 
G 5 HOH A 68 668 4 HOH HOH . 
G 5 HOH A 69 669 6 HOH HOH . 
G 5 HOH A 70 670 138 HOH HOH . 
G 5 HOH A 71 671 133 HOH HOH . 
G 5 HOH A 72 672 7 HOH HOH . 
G 5 HOH A 73 673 152 HOH HOH . 
G 5 HOH A 74 674 30 HOH HOH . 
G 5 HOH A 75 675 112 HOH HOH . 
G 5 HOH A 76 676 12 HOH HOH . 
G 5 HOH A 77 677 65 HOH HOH . 
G 5 HOH A 78 678 88 HOH HOH . 
G 5 HOH A 79 679 140 HOH HOH . 
G 5 HOH A 80 680 59 HOH HOH . 
G 5 HOH A 81 681 69 HOH HOH . 
G 5 HOH A 82 682 24 HOH HOH . 
G 5 HOH A 83 683 50 HOH HOH . 
G 5 HOH A 84 684 52 HOH HOH . 
G 5 HOH A 85 685 154 HOH HOH . 
G 5 HOH A 86 686 75 HOH HOH . 
G 5 HOH A 87 687 68 HOH HOH . 
G 5 HOH A 88 688 43 HOH HOH . 
G 5 HOH A 89 689 18 HOH HOH . 
G 5 HOH A 90 690 72 HOH HOH . 
G 5 HOH A 91 691 127 HOH HOH . 
G 5 HOH A 92 692 64 HOH HOH . 
G 5 HOH A 93 693 8 HOH HOH . 
G 5 HOH A 94 694 129 HOH HOH . 
G 5 HOH A 95 695 54 HOH HOH . 
G 5 HOH A 96 696 91 HOH HOH . 
G 5 HOH A 97 697 82 HOH HOH . 
G 5 HOH A 98 698 57 HOH HOH . 
G 5 HOH A 99 699 150 HOH HOH . 
G 5 HOH A 100 700 10 HOH HOH . 
G 5 HOH A 101 701 22 HOH HOH . 
G 5 HOH A 102 702 90 HOH HOH . 
G 5 HOH A 103 703 116 HOH HOH . 
G 5 HOH A 104 704 49 HOH HOH . 
G 5 HOH A 105 705 120 HOH HOH . 
G 5 HOH A 106 706 44 HOH HOH . 
G 5 HOH A 107 707 139 HOH HOH . 
G 5 HOH A 108 708 92 HOH HOH . 
G 5 HOH A 109 709 123 HOH HOH . 
G 5 HOH A 110 710 55 HOH HOH . 
G 5 HOH A 111 711 131 HOH HOH . 
G 5 HOH A 112 712 83 HOH HOH . 
G 5 HOH A 113 713 40 HOH HOH . 
G 5 HOH A 114 714 45 HOH HOH . 
G 5 HOH A 115 715 41 HOH HOH . 
G 5 HOH A 116 716 144 HOH HOH . 
G 5 HOH A 117 717 67 HOH HOH . 
G 5 HOH A 118 718 146 HOH HOH . 
G 5 HOH A 119 719 145 HOH HOH . 
G 5 HOH A 120 720 51 HOH HOH . 
G 5 HOH A 121 721 119 HOH HOH . 
G 5 HOH A 122 722 80 HOH HOH . 
G 5 HOH A 123 723 36 HOH HOH . 
G 5 HOH A 124 724 143 HOH HOH . 
G 5 HOH A 125 725 74 HOH HOH . 
G 5 HOH A 126 726 87 HOH HOH . 
G 5 HOH A 127 727 28 HOH HOH . 
G 5 HOH A 128 728 117 HOH HOH . 
G 5 HOH A 129 729 71 HOH HOH . 
G 5 HOH A 130 730 81 HOH HOH . 
G 5 HOH A 131 731 114 HOH HOH . 
G 5 HOH A 132 732 93 HOH HOH . 
G 5 HOH A 133 733 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -10.588 
_atom_site.Cartn_y               0.526 
_atom_site.Cartn_z               19.872 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.67 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#