data_5M4C # _model_server_result.job_id gsddMDMcVfpptXavL8O1JA _model_server_result.datetime_utc '2024-10-13 03:27:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5M4C # _exptl.entry_id 5M4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]sulfanylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M4C _cell.length_a 48.104 _cell.length_b 79.418 _cell.length_c 82.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H14 N2 O2 S2' _chem_comp.formula_weight 330.425 _chem_comp.id 7EY _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]sulfanylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 7EY doub 1 n y C4 N3 7EY sing 2 n y C4 SAO 7EY sing 3 n y C5 C6 7EY sing 4 n y C5 CAS 7EY sing 5 n y C6 N1 7EY doub 6 n y C6 SAN 7EY sing 7 n n N1 C2 7EY sing 8 n y N3 C2 7EY doub 9 n y OAB CAP 7EY doub 10 n n CAP OAC 7EY sing 11 n n CAP CAK 7EY sing 12 n n CAK CAJ 7EY sing 13 n n CAJ SAN 7EY sing 14 n n SAO CAI 7EY sing 15 n y CAI CAS 7EY doub 16 n y CAS CAR 7EY sing 17 n n CAR CAG 7EY doub 18 n y CAR CAH 7EY sing 19 n y CAG CAE 7EY sing 20 n y CAE CAQ 7EY doub 21 n y CAQ CAA 7EY sing 22 n n CAQ CAF 7EY sing 23 n y CAF CAH 7EY doub 24 n y OAC H1 7EY sing 25 n n CAK H2 7EY sing 26 n n CAK H3 7EY sing 27 n n CAJ H4 7EY sing 28 n n CAJ H5 7EY sing 29 n n C2 H6 7EY sing 30 n n CAI H7 7EY sing 31 n n CAG H9 7EY sing 32 n n CAE H10 7EY sing 33 n n CAA H11 7EY sing 34 n n CAA H12 7EY sing 35 n n CAA H13 7EY sing 36 n n CAF H14 7EY sing 37 n n CAH H15 7EY sing 38 n n # _atom_sites.entry_id 5M4C _atom_sites.fract_transf_matrix[1][1] 0.020788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7EY A 1 401 1 7EY DRG . C 3 CL A 1 402 2 CL CL . D 4 GOL A 1 403 3 GOL GOL . E 4 GOL A 1 404 4 GOL GOL . F 5 HOH A 1 501 165 HOH HOH . F 5 HOH A 2 502 33 HOH HOH . F 5 HOH A 3 503 91 HOH HOH . F 5 HOH A 4 504 88 HOH HOH . F 5 HOH A 5 505 214 HOH HOH . F 5 HOH A 6 506 31 HOH HOH . F 5 HOH A 7 507 23 HOH HOH . F 5 HOH A 8 508 181 HOH HOH . F 5 HOH A 9 509 220 HOH HOH . F 5 HOH A 10 510 46 HOH HOH . F 5 HOH A 11 511 216 HOH HOH . F 5 HOH A 12 512 151 HOH HOH . F 5 HOH A 13 513 66 HOH HOH . F 5 HOH A 14 514 98 HOH HOH . F 5 HOH A 15 515 50 HOH HOH . F 5 HOH A 16 516 6 HOH HOH . F 5 HOH A 17 517 163 HOH HOH . F 5 HOH A 18 518 187 HOH HOH . F 5 HOH A 19 519 134 HOH HOH . F 5 HOH A 20 520 188 HOH HOH . F 5 HOH A 21 521 71 HOH HOH . F 5 HOH A 22 522 93 HOH HOH . F 5 HOH A 23 523 11 HOH HOH . F 5 HOH A 24 524 30 HOH HOH . F 5 HOH A 25 525 115 HOH HOH . F 5 HOH A 26 526 117 HOH HOH . F 5 HOH A 27 527 121 HOH HOH . F 5 HOH A 28 528 101 HOH HOH . F 5 HOH A 29 529 69 HOH HOH . F 5 HOH A 30 530 127 HOH HOH . F 5 HOH A 31 531 59 HOH HOH . F 5 HOH A 32 532 83 HOH HOH . F 5 HOH A 33 533 237 HOH HOH . F 5 HOH A 34 534 159 HOH HOH . F 5 HOH A 35 535 94 HOH HOH . F 5 HOH A 36 536 212 HOH HOH . F 5 HOH A 37 537 234 HOH HOH . F 5 HOH A 38 538 37 HOH HOH . F 5 HOH A 39 539 153 HOH HOH . F 5 HOH A 40 540 27 HOH HOH . F 5 HOH A 41 541 64 HOH HOH . F 5 HOH A 42 542 29 HOH HOH . F 5 HOH A 43 543 42 HOH HOH . F 5 HOH A 44 544 229 HOH HOH . F 5 HOH A 45 545 22 HOH HOH . F 5 HOH A 46 546 161 HOH HOH . F 5 HOH A 47 547 173 HOH HOH . F 5 HOH A 48 548 5 HOH HOH . F 5 HOH A 49 549 47 HOH HOH . F 5 HOH A 50 550 228 HOH HOH . F 5 HOH A 51 551 95 HOH HOH . F 5 HOH A 52 552 12 HOH HOH . F 5 HOH A 53 553 58 HOH HOH . F 5 HOH A 54 554 138 HOH HOH . F 5 HOH A 55 555 41 HOH HOH . F 5 HOH A 56 556 78 HOH HOH . F 5 HOH A 57 557 102 HOH HOH . F 5 HOH A 58 558 61 HOH HOH . F 5 HOH A 59 559 195 HOH HOH . F 5 HOH A 60 560 74 HOH HOH . F 5 HOH A 61 561 70 HOH HOH . F 5 HOH A 62 562 172 HOH HOH . F 5 HOH A 63 563 112 HOH HOH . F 5 HOH A 64 564 7 HOH HOH . F 5 HOH A 65 565 119 HOH HOH . F 5 HOH A 66 566 152 HOH HOH . F 5 HOH A 67 567 176 HOH HOH . F 5 HOH A 68 568 28 HOH HOH . F 5 HOH A 69 569 107 HOH HOH . F 5 HOH A 70 570 97 HOH HOH . F 5 HOH A 71 571 156 HOH HOH . F 5 HOH A 72 572 240 HOH HOH . F 5 HOH A 73 573 169 HOH HOH . F 5 HOH A 74 574 21 HOH HOH . F 5 HOH A 75 575 19 HOH HOH . F 5 HOH A 76 576 139 HOH HOH . F 5 HOH A 77 577 120 HOH HOH . F 5 HOH A 78 578 96 HOH HOH . F 5 HOH A 79 579 14 HOH HOH . F 5 HOH A 80 580 35 HOH HOH . F 5 HOH A 81 581 13 HOH HOH . F 5 HOH A 82 582 17 HOH HOH . F 5 HOH A 83 583 227 HOH HOH . F 5 HOH A 84 584 32 HOH HOH . F 5 HOH A 85 585 81 HOH HOH . F 5 HOH A 86 586 38 HOH HOH . F 5 HOH A 87 587 57 HOH HOH . F 5 HOH A 88 588 48 HOH HOH . F 5 HOH A 89 589 99 HOH HOH . F 5 HOH A 90 590 75 HOH HOH . F 5 HOH A 91 591 4 HOH HOH . F 5 HOH A 92 592 140 HOH HOH . F 5 HOH A 93 593 192 HOH HOH . F 5 HOH A 94 594 142 HOH HOH . F 5 HOH A 95 595 223 HOH HOH . F 5 HOH A 96 596 16 HOH HOH . F 5 HOH A 97 597 25 HOH HOH . F 5 HOH A 98 598 146 HOH HOH . F 5 HOH A 99 599 186 HOH HOH . F 5 HOH A 100 600 149 HOH HOH . F 5 HOH A 101 601 36 HOH HOH . F 5 HOH A 102 602 109 HOH HOH . F 5 HOH A 103 603 77 HOH HOH . F 5 HOH A 104 604 3 HOH HOH . F 5 HOH A 105 605 9 HOH HOH . F 5 HOH A 106 606 206 HOH HOH . F 5 HOH A 107 607 217 HOH HOH . F 5 HOH A 108 608 86 HOH HOH . F 5 HOH A 109 609 118 HOH HOH . F 5 HOH A 110 610 24 HOH HOH . F 5 HOH A 111 611 62 HOH HOH . F 5 HOH A 112 612 80 HOH HOH . F 5 HOH A 113 613 60 HOH HOH . F 5 HOH A 114 614 39 HOH HOH . F 5 HOH A 115 615 20 HOH HOH . F 5 HOH A 116 616 106 HOH HOH . F 5 HOH A 117 617 225 HOH HOH . F 5 HOH A 118 618 26 HOH HOH . F 5 HOH A 119 619 108 HOH HOH . F 5 HOH A 120 620 43 HOH HOH . F 5 HOH A 121 621 133 HOH HOH . F 5 HOH A 122 622 147 HOH HOH . F 5 HOH A 123 623 34 HOH HOH . F 5 HOH A 124 624 103 HOH HOH . F 5 HOH A 125 625 52 HOH HOH . F 5 HOH A 126 626 8 HOH HOH . F 5 HOH A 127 627 2 HOH HOH . F 5 HOH A 128 628 49 HOH HOH . F 5 HOH A 129 629 175 HOH HOH . F 5 HOH A 130 630 221 HOH HOH . F 5 HOH A 131 631 40 HOH HOH . F 5 HOH A 132 632 145 HOH HOH . F 5 HOH A 133 633 136 HOH HOH . F 5 HOH A 134 634 203 HOH HOH . F 5 HOH A 135 635 67 HOH HOH . F 5 HOH A 136 636 137 HOH HOH . F 5 HOH A 137 637 174 HOH HOH . F 5 HOH A 138 638 213 HOH HOH . F 5 HOH A 139 639 45 HOH HOH . F 5 HOH A 140 640 105 HOH HOH . F 5 HOH A 141 641 180 HOH HOH . F 5 HOH A 142 642 155 HOH HOH . F 5 HOH A 143 643 85 HOH HOH . F 5 HOH A 144 644 65 HOH HOH . F 5 HOH A 145 645 54 HOH HOH . F 5 HOH A 146 646 128 HOH HOH . F 5 HOH A 147 647 76 HOH HOH . F 5 HOH A 148 648 182 HOH HOH . F 5 HOH A 149 649 168 HOH HOH . F 5 HOH A 150 650 232 HOH HOH . F 5 HOH A 151 651 184 HOH HOH . F 5 HOH A 152 652 53 HOH HOH . F 5 HOH A 153 653 89 HOH HOH . F 5 HOH A 154 654 114 HOH HOH . F 5 HOH A 155 655 148 HOH HOH . F 5 HOH A 156 656 171 HOH HOH . F 5 HOH A 157 657 141 HOH HOH . F 5 HOH A 158 658 55 HOH HOH . F 5 HOH A 159 659 144 HOH HOH . F 5 HOH A 160 660 199 HOH HOH . F 5 HOH A 161 661 100 HOH HOH . F 5 HOH A 162 662 179 HOH HOH . F 5 HOH A 163 663 193 HOH HOH . F 5 HOH A 164 664 73 HOH HOH . F 5 HOH A 165 665 72 HOH HOH . F 5 HOH A 166 666 87 HOH HOH . F 5 HOH A 167 667 210 HOH HOH . F 5 HOH A 168 668 205 HOH HOH . F 5 HOH A 169 669 63 HOH HOH . F 5 HOH A 170 670 166 HOH HOH . F 5 HOH A 171 671 10 HOH HOH . F 5 HOH A 172 672 135 HOH HOH . F 5 HOH A 173 673 15 HOH HOH . F 5 HOH A 174 674 211 HOH HOH . F 5 HOH A 175 675 111 HOH HOH . F 5 HOH A 176 676 235 HOH HOH . F 5 HOH A 177 677 56 HOH HOH . F 5 HOH A 178 678 154 HOH HOH . F 5 HOH A 179 679 231 HOH HOH . F 5 HOH A 180 680 116 HOH HOH . F 5 HOH A 181 681 18 HOH HOH . F 5 HOH A 182 682 122 HOH HOH . F 5 HOH A 183 683 125 HOH HOH . F 5 HOH A 184 684 200 HOH HOH . F 5 HOH A 185 685 183 HOH HOH . F 5 HOH A 186 686 113 HOH HOH . F 5 HOH A 187 687 124 HOH HOH . F 5 HOH A 188 688 92 HOH HOH . F 5 HOH A 189 689 233 HOH HOH . F 5 HOH A 190 690 132 HOH HOH . F 5 HOH A 191 691 218 HOH HOH . F 5 HOH A 192 692 84 HOH HOH . F 5 HOH A 193 693 178 HOH HOH . F 5 HOH A 194 694 197 HOH HOH . F 5 HOH A 195 695 236 HOH HOH . F 5 HOH A 196 696 123 HOH HOH . F 5 HOH A 197 697 238 HOH HOH . F 5 HOH A 198 698 191 HOH HOH . F 5 HOH A 199 699 68 HOH HOH . F 5 HOH A 200 700 143 HOH HOH . F 5 HOH A 201 701 239 HOH HOH . F 5 HOH A 202 702 196 HOH HOH . F 5 HOH A 203 703 164 HOH HOH . F 5 HOH A 204 704 90 HOH HOH . F 5 HOH A 205 705 170 HOH HOH . F 5 HOH A 206 706 162 HOH HOH . F 5 HOH A 207 707 110 HOH HOH . F 5 HOH A 208 708 130 HOH HOH . F 5 HOH A 209 709 241 HOH HOH . F 5 HOH A 210 710 1 HOH HOH . F 5 HOH A 211 711 194 HOH HOH . F 5 HOH A 212 712 126 HOH HOH . F 5 HOH A 213 713 222 HOH HOH . F 5 HOH A 214 714 160 HOH HOH . F 5 HOH A 215 715 207 HOH HOH . F 5 HOH A 216 716 129 HOH HOH . F 5 HOH A 217 717 82 HOH HOH . F 5 HOH A 218 718 204 HOH HOH . F 5 HOH A 219 719 79 HOH HOH . F 5 HOH A 220 720 209 HOH HOH . F 5 HOH A 221 721 185 HOH HOH . F 5 HOH A 222 722 215 HOH HOH . F 5 HOH A 223 723 167 HOH HOH . F 5 HOH A 224 724 208 HOH HOH . F 5 HOH A 225 725 219 HOH HOH . F 5 HOH A 226 726 201 HOH HOH . F 5 HOH A 227 727 198 HOH HOH . F 5 HOH A 228 728 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7EY . . . B 2 -12.741 -8.442 -11.034 1 16.78 ? C4 7EY 401 A 1 HETATM 2 C C5 7EY . . . B 2 -13.064 -7.135 -10.766 1 16.41 ? C5 7EY 401 A 1 HETATM 3 C C6 7EY . . . B 2 -13.003 -6.265 -11.831 1 16.59 ? C6 7EY 401 A 1 HETATM 4 N N1 7EY . . . B 2 -12.609 -6.66 -13.057 1 16.46 ? N1 7EY 401 A 1 HETATM 5 N N3 7EY . . . B 2 -12.38 -8.862 -12.256 1 17.72 ? N3 7EY 401 A 1 HETATM 6 O OAB 7EY . . . B 2 -10.971 -1.604 -14.638 1 22.86 ? OAB 7EY 401 A 1 HETATM 7 C CAP 7EY . . . B 2 -11.977 -2.057 -14.033 1 23.75 ? CAP 7EY 401 A 1 HETATM 8 O OAC 7EY . . . B 2 -12.733 -1.379 -13.311 1 23.3 -1 OAC 7EY 401 A 1 HETATM 9 C CAK 7EY . . . B 2 -12.275 -3.578 -14.176 1 20.05 ? CAK 7EY 401 A 1 HETATM 10 C CAJ 7EY . . . B 2 -13.599 -4.001 -13.481 1 17.42 ? CAJ 7EY 401 A 1 HETATM 11 S SAN 7EY . . . B 2 -13.4 -4.553 -11.751 1 17.7 ? SAN 7EY 401 A 1 HETATM 12 C C2 7EY . . . B 2 -12.292 -7.987 -13.317 1 19.32 ? C2 7EY 401 A 1 HETATM 13 S SAO 7EY . . . B 2 -12.927 -9.399 -9.662 1 19.54 ? SAO 7EY 401 A 1 HETATM 14 C CAI 7EY . . . B 2 -13.404 -8.091 -8.712 1 19.46 ? CAI 7EY 401 A 1 HETATM 15 C CAS 7EY . . . B 2 -13.436 -6.968 -9.449 1 17.88 ? CAS 7EY 401 A 1 HETATM 16 C CAR 7EY . . . B 2 -13.807 -5.815 -8.801 1 19.52 ? CAR 7EY 401 A 1 HETATM 17 C CAG 7EY . . . B 2 -12.95 -4.698 -8.707 1 21.66 ? CAG 7EY 401 A 1 HETATM 18 C CAE 7EY . . . B 2 -13.289 -3.513 -8.037 1 22.45 ? CAE 7EY 401 A 1 HETATM 19 C CAQ 7EY . . . B 2 -14.524 -3.453 -7.389 1 24.46 ? CAQ 7EY 401 A 1 HETATM 20 C CAA 7EY . . . B 2 -14.923 -2.303 -6.696 1 26.39 ? CAA 7EY 401 A 1 HETATM 21 C CAF 7EY . . . B 2 -15.377 -4.565 -7.437 1 23.83 ? CAF 7EY 401 A 1 HETATM 22 C CAH 7EY . . . B 2 -15.007 -5.741 -8.116 1 20.01 ? CAH 7EY 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #