data_5M4K # _model_server_result.job_id iJVxrKoMOxfNxi2RqnPO3g _model_server_result.datetime_utc '2024-11-14 16:34:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5M4K # _exptl.entry_id 5M4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.878 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M4K _cell.length_a 108.092 _cell.length_b 108.092 _cell.length_c 84.441 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H25 Cl N2 O2' _chem_comp.formula_weight 360.878 _chem_comp.id TF3 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TF3 doub 336 n y C1 C3 TF3 sing 337 n y C1 O1 TF3 sing 338 n n C2 C4 TF3 sing 339 n y C2 CL1 TF3 sing 340 n n C3 C5 TF3 doub 341 n y C3 H3 TF3 sing 342 n n O1 C6 TF3 sing 343 n n C4 C7 TF3 doub 344 n y C4 H4 TF3 sing 345 n n C5 C7 TF3 sing 346 n y C5 H5 TF3 sing 347 n n C6 C8 TF3 sing 348 n n C6 H6C1 TF3 sing 349 n n C6 H6C2 TF3 sing 350 n n C7 C9 TF3 sing 351 n n C8 C10 TF3 doub 352 n y C8 C11 TF3 sing 353 n y C9 C12 TF3 sing 354 n n C9 H9C1 TF3 sing 355 n n C9 H9C2 TF3 sing 356 n n C10 C13 TF3 sing 357 n y C10 H10 TF3 sing 358 n n C11 C14 TF3 doub 359 n y C11 H11 TF3 sing 360 n n C12 N1 TF3 sing 361 n n C12 O2 TF3 doub 362 n n C13 C15 TF3 doub 363 n y C13 H13 TF3 sing 364 n n C14 C15 TF3 sing 365 n y C14 H14 TF3 sing 366 n n N1 C16 TF3 sing 367 n n N1 H1 TF3 sing 368 n n C15 C17 TF3 sing 369 n n C16 C18 TF3 sing 370 n n C16 H161 TF3 sing 371 n n C16 H162 TF3 sing 372 n n C17 C19 TF3 sing 373 n n C17 C20 TF3 sing 374 n n C17 H17 TF3 sing 375 n n C18 N2 TF3 sing 376 n n C18 H181 TF3 sing 377 n n C18 H182 TF3 sing 378 n n C19 H191 TF3 sing 379 n n C19 H192 TF3 sing 380 n n C19 H193 TF3 sing 381 n n C20 H201 TF3 sing 382 n n C20 H202 TF3 sing 383 n n C20 H203 TF3 sing 384 n n N2 H2N1 TF3 sing 385 n n N2 H2N2 TF3 sing 386 n n # _atom_sites.entry_id 5M4K _atom_sites.fract_transf_matrix[1][1] 0.009251 _atom_sites.fract_transf_matrix[1][2] 0.005341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TF3 A 1 401 1367 TF3 PFI . C 3 7F9 A 1 402 1368 7F9 UNL . D 4 MG A 1 403 1369 MG MG . E 5 HOH A 1 501 2060 HOH HOH . E 5 HOH A 2 502 2057 HOH HOH . E 5 HOH A 3 503 2009 HOH HOH . E 5 HOH A 4 504 2058 HOH HOH . E 5 HOH A 5 505 2062 HOH HOH . E 5 HOH A 6 506 2023 HOH HOH . E 5 HOH A 7 507 2008 HOH HOH . E 5 HOH A 8 508 2061 HOH HOH . E 5 HOH A 9 509 2022 HOH HOH . E 5 HOH A 10 510 2001 HOH HOH . E 5 HOH A 11 511 2047 HOH HOH . E 5 HOH A 12 512 2055 HOH HOH . E 5 HOH A 13 513 2053 HOH HOH . E 5 HOH A 14 514 2063 HOH HOH . E 5 HOH A 15 515 2065 HOH HOH . E 5 HOH A 16 516 2059 HOH HOH . E 5 HOH A 17 517 2026 HOH HOH . E 5 HOH A 18 518 2012 HOH HOH . E 5 HOH A 19 519 2010 HOH HOH . E 5 HOH A 20 520 2034 HOH HOH . E 5 HOH A 21 521 2045 HOH HOH . E 5 HOH A 22 522 2027 HOH HOH . E 5 HOH A 23 523 2046 HOH HOH . E 5 HOH A 24 524 2014 HOH HOH . E 5 HOH A 25 525 2017 HOH HOH . E 5 HOH A 26 526 2007 HOH HOH . E 5 HOH A 27 527 2004 HOH HOH . E 5 HOH A 28 528 2056 HOH HOH . E 5 HOH A 29 529 2006 HOH HOH . E 5 HOH A 30 530 2005 HOH HOH . E 5 HOH A 31 531 2036 HOH HOH . E 5 HOH A 32 532 2003 HOH HOH . E 5 HOH A 33 533 2020 HOH HOH . E 5 HOH A 34 534 2048 HOH HOH . E 5 HOH A 35 535 2013 HOH HOH . E 5 HOH A 36 536 2015 HOH HOH . E 5 HOH A 37 537 2029 HOH HOH . E 5 HOH A 38 538 2064 HOH HOH . E 5 HOH A 39 539 2002 HOH HOH . E 5 HOH A 40 540 2038 HOH HOH . E 5 HOH A 41 541 2040 HOH HOH . E 5 HOH A 42 542 2044 HOH HOH . E 5 HOH A 43 543 2037 HOH HOH . E 5 HOH A 44 544 2024 HOH HOH . E 5 HOH A 45 545 2049 HOH HOH . E 5 HOH A 46 546 2042 HOH HOH . E 5 HOH A 47 547 2016 HOH HOH . E 5 HOH A 48 548 2011 HOH HOH . E 5 HOH A 49 549 2050 HOH HOH . E 5 HOH A 50 550 2030 HOH HOH . E 5 HOH A 51 551 2054 HOH HOH . E 5 HOH A 52 552 2052 HOH HOH . E 5 HOH A 53 553 2066 HOH HOH . E 5 HOH A 54 554 2018 HOH HOH . E 5 HOH A 55 555 2039 HOH HOH . E 5 HOH A 56 556 2025 HOH HOH . E 5 HOH A 57 557 2051 HOH HOH . E 5 HOH A 58 558 2031 HOH HOH . E 5 HOH A 59 559 2019 HOH HOH . E 5 HOH A 60 560 2021 HOH HOH . E 5 HOH A 61 561 2035 HOH HOH . E 5 HOH A 62 562 2033 HOH HOH . E 5 HOH A 63 563 2041 HOH HOH . E 5 HOH A 64 564 2043 HOH HOH . E 5 HOH A 65 565 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TF3 . . . B 2 36.397 -35.151 -17.621 1 68.91 ? C1 TF3 401 A 1 HETATM 2 C C2 TF3 . . . B 2 36.296 -36.293 -18.391 1 68.71 ? C2 TF3 401 A 1 HETATM 3 C C3 TF3 . . . B 2 35.427 -34.16 -17.744 1 69.34 ? C3 TF3 401 A 1 HETATM 4 O O1 TF3 . . . B 2 37.474 -35.134 -16.784 1 66.36 ? O1 TF3 401 A 1 HETATM 5 C C4 TF3 . . . B 2 35.266 -36.488 -19.296 1 71.18 ? C4 TF3 401 A 1 HETATM 6 CL CL1 TF3 . . . B 2 37.527 -37.473 -18.16 1 68.78 ? CL1 TF3 401 A 1 HETATM 7 C C5 TF3 . . . B 2 34.38 -34.352 -18.657 1 75.69 ? C5 TF3 401 A 1 HETATM 8 C C6 TF3 . . . B 2 37.844 -34.006 -16.015 1 63.96 ? C6 TF3 401 A 1 HETATM 9 C C7 TF3 . . . B 2 34.287 -35.511 -19.443 1 81.99 ? C7 TF3 401 A 1 HETATM 10 C C8 TF3 . . . B 2 39.067 -34.097 -15.353 1 60.27 ? C8 TF3 401 A 1 HETATM 11 C C9 TF3 . . . B 2 33.118 -35.704 -20.47 1 86.74 ? C9 TF3 401 A 1 HETATM 12 C C10 TF3 . . . B 2 39.622 -32.989 -14.701 1 57.82 ? C10 TF3 401 A 1 HETATM 13 C C11 TF3 . . . B 2 39.737 -35.317 -15.344 1 56.27 ? C11 TF3 401 A 1 HETATM 14 C C12 TF3 . . . B 2 33.626 -36.036 -21.926 1 95.06 ? C12 TF3 401 A 1 HETATM 15 C C13 TF3 . . . B 2 40.851 -33.12 -14.047 1 55.26 ? C13 TF3 401 A 1 HETATM 16 C C14 TF3 . . . B 2 40.958 -35.433 -14.697 1 53.62 ? C14 TF3 401 A 1 HETATM 17 N N1 TF3 . . . B 2 33.485 -37.306 -22.298 1 103.86 ? N1 TF3 401 A 1 HETATM 18 O O2 TF3 . . . B 2 34.125 -35.175 -22.663 1 81.35 ? O2 TF3 401 A 1 HETATM 19 C C15 TF3 . . . B 2 41.514 -34.352 -14.057 1 53.43 ? C15 TF3 401 A 1 HETATM 20 C C16 TF3 . . . B 2 33.918 -37.81 -23.624 1 108.79 ? C16 TF3 401 A 1 HETATM 21 C C17 TF3 . . . B 2 42.829 -34.61 -13.366 1 60.06 ? C17 TF3 401 A 1 HETATM 22 C C18 TF3 . . . B 2 33.824 -39.347 -23.674 1 109.79 ? C18 TF3 401 A 1 HETATM 23 C C19 TF3 . . . B 2 43.842 -33.542 -13.703 1 63.2 ? C19 TF3 401 A 1 HETATM 24 C C20 TF3 . . . B 2 42.55 -34.607 -11.872 1 66.23 ? C20 TF3 401 A 1 HETATM 25 N N2 TF3 . . . B 2 32.459 -39.765 -23.318 1 110.17 ? N2 TF3 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #