data_5M4K # _model_server_result.job_id lzLg3qD8S7f4SaTLlgX1ow _model_server_result.datetime_utc '2024-11-22 20:41:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5M4K # _exptl.entry_id 5M4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.362 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[2-(ethylamino)-2-oxidanylidene-ethyl]-~{N}-(4-methoxyphenyl)-2,4-bis(oxidanyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5M4K _cell.length_a 108.092 _cell.length_b 108.092 _cell.length_c 84.441 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 N2 O5' _chem_comp.formula_weight 344.362 _chem_comp.id 7F9 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[2-(ethylamino)-2-oxidanylidene-ethyl]-~{N}-(4-methoxyphenyl)-2,4-bis(oxidanyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C2 7F9 sing 1 n n C14 O2 7F9 sing 2 n n C2 C3 7F9 doub 3 n y C2 C1 7F9 sing 4 n y O2 C11 7F9 sing 5 n n C3 C4 7F9 sing 6 n y C12 C11 7F9 doub 7 n y C12 C13 7F9 sing 8 n y C1 C6 7F9 doub 9 n y C11 C10 7F9 sing 10 n y C4 O3 7F9 sing 11 n n C4 C5 7F9 doub 12 n y C13 C8 7F9 doub 13 n y C6 C5 7F9 sing 14 n y C10 C9 7F9 doub 15 n y C5 C7 7F9 sing 16 n n C8 C9 7F9 sing 17 n y C8 N1 7F9 sing 18 n n C7 N1 7F9 sing 19 n n C7 O1 7F9 doub 20 n n N1 C17 7F9 sing 21 n n O5 C15 7F9 doub 22 n n C18 C16 7F9 sing 23 n n C15 C17 7F9 sing 24 n n C15 N2 7F9 sing 25 n n C16 N2 7F9 sing 26 n n C1 H1 7F9 sing 27 n n N2 H2 7F9 sing 28 n n C3 H3 7F9 sing 29 n n O3 H4 7F9 sing 30 n n O4 H5 7F9 sing 31 n n C6 H6 7F9 sing 32 n n C9 H7 7F9 sing 33 n n C10 H8 7F9 sing 34 n n C12 H9 7F9 sing 35 n n C13 H10 7F9 sing 36 n n C14 H11 7F9 sing 37 n n C14 H12 7F9 sing 38 n n C14 H13 7F9 sing 39 n n C16 H14 7F9 sing 40 n n C16 H15 7F9 sing 41 n n C17 H16 7F9 sing 42 n n C17 H17 7F9 sing 43 n n C18 H18 7F9 sing 44 n n C18 H19 7F9 sing 45 n n C18 H20 7F9 sing 46 n n # _atom_sites.entry_id 5M4K _atom_sites.fract_transf_matrix[1][1] 0.009251 _atom_sites.fract_transf_matrix[1][2] 0.005341 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TF3 A 1 401 1367 TF3 PFI . C 3 7F9 A 1 402 1368 7F9 UNL . D 4 MG A 1 403 1369 MG MG . E 5 HOH A 1 501 2060 HOH HOH . E 5 HOH A 2 502 2057 HOH HOH . E 5 HOH A 3 503 2009 HOH HOH . E 5 HOH A 4 504 2058 HOH HOH . E 5 HOH A 5 505 2062 HOH HOH . E 5 HOH A 6 506 2023 HOH HOH . E 5 HOH A 7 507 2008 HOH HOH . E 5 HOH A 8 508 2061 HOH HOH . E 5 HOH A 9 509 2022 HOH HOH . E 5 HOH A 10 510 2001 HOH HOH . E 5 HOH A 11 511 2047 HOH HOH . E 5 HOH A 12 512 2055 HOH HOH . E 5 HOH A 13 513 2053 HOH HOH . E 5 HOH A 14 514 2063 HOH HOH . E 5 HOH A 15 515 2065 HOH HOH . E 5 HOH A 16 516 2059 HOH HOH . E 5 HOH A 17 517 2026 HOH HOH . E 5 HOH A 18 518 2012 HOH HOH . E 5 HOH A 19 519 2010 HOH HOH . E 5 HOH A 20 520 2034 HOH HOH . E 5 HOH A 21 521 2045 HOH HOH . E 5 HOH A 22 522 2027 HOH HOH . E 5 HOH A 23 523 2046 HOH HOH . E 5 HOH A 24 524 2014 HOH HOH . E 5 HOH A 25 525 2017 HOH HOH . E 5 HOH A 26 526 2007 HOH HOH . E 5 HOH A 27 527 2004 HOH HOH . E 5 HOH A 28 528 2056 HOH HOH . E 5 HOH A 29 529 2006 HOH HOH . E 5 HOH A 30 530 2005 HOH HOH . E 5 HOH A 31 531 2036 HOH HOH . E 5 HOH A 32 532 2003 HOH HOH . E 5 HOH A 33 533 2020 HOH HOH . E 5 HOH A 34 534 2048 HOH HOH . E 5 HOH A 35 535 2013 HOH HOH . E 5 HOH A 36 536 2015 HOH HOH . E 5 HOH A 37 537 2029 HOH HOH . E 5 HOH A 38 538 2064 HOH HOH . E 5 HOH A 39 539 2002 HOH HOH . E 5 HOH A 40 540 2038 HOH HOH . E 5 HOH A 41 541 2040 HOH HOH . E 5 HOH A 42 542 2044 HOH HOH . E 5 HOH A 43 543 2037 HOH HOH . E 5 HOH A 44 544 2024 HOH HOH . E 5 HOH A 45 545 2049 HOH HOH . E 5 HOH A 46 546 2042 HOH HOH . E 5 HOH A 47 547 2016 HOH HOH . E 5 HOH A 48 548 2011 HOH HOH . E 5 HOH A 49 549 2050 HOH HOH . E 5 HOH A 50 550 2030 HOH HOH . E 5 HOH A 51 551 2054 HOH HOH . E 5 HOH A 52 552 2052 HOH HOH . E 5 HOH A 53 553 2066 HOH HOH . E 5 HOH A 54 554 2018 HOH HOH . E 5 HOH A 55 555 2039 HOH HOH . E 5 HOH A 56 556 2025 HOH HOH . E 5 HOH A 57 557 2051 HOH HOH . E 5 HOH A 58 558 2031 HOH HOH . E 5 HOH A 59 559 2019 HOH HOH . E 5 HOH A 60 560 2021 HOH HOH . E 5 HOH A 61 561 2035 HOH HOH . E 5 HOH A 62 562 2033 HOH HOH . E 5 HOH A 63 563 2041 HOH HOH . E 5 HOH A 64 564 2043 HOH HOH . E 5 HOH A 65 565 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7F9 . . . C 3 33.77 -36.643 9.067 1 49.96 ? C1 7F9 402 A 1 HETATM 2 N N1 7F9 . . . C 3 32.226 -32.91 10.697 1 53.05 ? N1 7F9 402 A 1 HETATM 3 O O1 7F9 . . . C 3 30.815 -34.431 11.786 1 52.26 ? O1 7F9 402 A 1 HETATM 4 C C2 7F9 . . . C 3 34.281 -37.444 10.084 1 46.65 ? C2 7F9 402 A 1 HETATM 5 N N2 7F9 . . . C 3 31.185 -30.127 12.589 1 73.57 ? N2 7F9 402 A 1 HETATM 6 O O2 7F9 . . . C 3 36.604 -32.538 7.228 1 60.22 ? O2 7F9 402 A 1 HETATM 7 C C3 7F9 . . . C 3 33.95 -37.178 11.406 1 48.76 ? C3 7F9 402 A 1 HETATM 8 O O3 7F9 . . . C 3 32.752 -35.806 12.972 1 51.74 ? O3 7F9 402 A 1 HETATM 9 C C4 7F9 . . . C 3 33.11 -36.111 11.695 1 49.21 ? C4 7F9 402 A 1 HETATM 10 O O4 7F9 . . . C 3 35.104 -38.486 9.789 1 40.33 ? O4 7F9 402 A 1 HETATM 11 C C5 7F9 . . . C 3 32.591 -35.303 10.687 1 51.48 ? C5 7F9 402 A 1 HETATM 12 O O5 7F9 . . . C 3 33.175 -30.402 11.538 1 64.22 ? O5 7F9 402 A 1 HETATM 13 C C6 7F9 . . . C 3 32.925 -35.577 9.364 1 53.86 ? C6 7F9 402 A 1 HETATM 14 C C7 7F9 . . . C 3 31.755 -34.243 11.036 1 52.35 ? C7 7F9 402 A 1 HETATM 15 C C8 7F9 . . . C 3 33.312 -32.779 9.752 1 55.56 ? C8 7F9 402 A 1 HETATM 16 C C9 7F9 . . . C 3 34.566 -33.227 10.156 1 58.51 ? C9 7F9 402 A 1 HETATM 17 C C10 7F9 . . . C 3 35.662 -33.144 9.31 1 55.5 ? C10 7F9 402 A 1 HETATM 18 C C11 7F9 . . . C 3 35.508 -32.607 8.04 1 56.37 ? C11 7F9 402 A 1 HETATM 19 C C12 7F9 . . . C 3 34.249 -32.16 7.631 1 55.54 ? C12 7F9 402 A 1 HETATM 20 C C13 7F9 . . . C 3 33.146 -32.243 8.479 1 55.38 ? C13 7F9 402 A 1 HETATM 21 C C14 7F9 . . . C 3 36.392 -31.761 6.045 1 60.06 ? C14 7F9 402 A 1 HETATM 22 C C15 7F9 . . . C 3 31.983 -30.695 11.675 1 64.76 ? C15 7F9 402 A 1 HETATM 23 C C16 7F9 . . . C 3 31.673 -29.085 13.504 1 76.58 ? C16 7F9 402 A 1 HETATM 24 C C17 7F9 . . . C 3 31.309 -31.769 10.809 1 58.42 ? C17 7F9 402 A 1 HETATM 25 C C18 7F9 . . . C 3 30.562 -28.065 13.756 1 76.64 ? C18 7F9 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 25 #