data_5M4P
#
_model_server_result.job_id            A4D5jp2jzKNMmDJLYzus3Q 
_model_server_result.datetime_utc      '2024-11-14 03:58:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5M4P 
#
_exptl.entry_id    5M4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              529.029 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[4-(2-chloranyl-5-methyl-pyrimidin-4-yl)phenyl]-2,4-bis(oxidanyl)-~{N}-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5M4P 
_cell.length_a            109.442 
_cell.length_b            109.442 
_cell.length_c            84.515 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C30 H29 Cl N4 O3' 
_chem_comp.formula_weight    529.029 
_chem_comp.id                7FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[4-(2-chloranyl-5-methyl-pyrimidin-4-yl)phenyl]-2,4-bis(oxidanyl)-~{N}-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C25 7FE sing 1 n n 
C24 C25 7FE doub 2 n y 
C24 N3 7FE sing 3 n y 
C25 C22 7FE sing 4 n y 
C18 C17 7FE doub 5 n y 
C18 C19 7FE sing 6 n y 
N3 C23 7FE doub 7 n y 
C17 C10 7FE sing 8 n y 
C22 C19 7FE sing 9 n n 
C22 N2 7FE doub 10 n y 
C19 C20 7FE doub 11 n y 
C6 C5 7FE doub 12 n y 
C6 C1 7FE sing 13 n y 
C23 N2 7FE sing 14 n y 
C23 CL 7FE sing 15 n n 
C5 C4 7FE sing 16 n y 
C10 N1 7FE sing 17 n n 
C10 C21 7FE doub 18 n y 
O1 C1 7FE sing 19 n n 
C8 N1 7FE sing 20 n n 
C8 C9 7FE sing 21 n n 
N1 C7 7FE sing 22 n n 
C20 C21 7FE sing 23 n y 
C1 C2 7FE doub 24 n y 
C4 C7 7FE sing 25 n n 
C4 C3 7FE doub 26 n y 
C7 O3 7FE doub 27 n n 
C11 C9 7FE doub 28 n y 
C11 C12 7FE sing 29 n y 
C9 C15 7FE sing 30 n y 
C2 C3 7FE sing 31 n y 
C3 O2 7FE sing 32 n n 
C12 C13 7FE doub 33 n y 
C15 C14 7FE doub 34 n y 
C27 C28 7FE sing 35 n n 
C27 N4 7FE sing 36 n n 
C28 C29 7FE sing 37 n n 
C13 C14 7FE sing 38 n y 
C13 C16 7FE sing 39 n n 
N4 C16 7FE sing 40 n n 
N4 C30 7FE sing 41 n n 
C29 C30 7FE sing 42 n n 
O1 H1 7FE sing 43 n n 
C2 H2 7FE sing 44 n n 
O2 H3 7FE sing 45 n n 
C5 H5 7FE sing 46 n n 
C6 H6 7FE sing 47 n n 
C8 H7 7FE sing 48 n n 
C8 H8 7FE sing 49 n n 
C11 H9 7FE sing 50 n n 
C12 H10 7FE sing 51 n n 
C14 H11 7FE sing 52 n n 
C15 H12 7FE sing 53 n n 
C16 H13 7FE sing 54 n n 
C16 H14 7FE sing 55 n n 
C17 H15 7FE sing 56 n n 
C18 H16 7FE sing 57 n n 
C20 H17 7FE sing 58 n n 
C21 H18 7FE sing 59 n n 
C24 H19 7FE sing 60 n n 
C26 H20 7FE sing 61 n n 
C26 H21 7FE sing 62 n n 
C26 H22 7FE sing 63 n n 
C27 H23 7FE sing 64 n n 
C27 H24 7FE sing 65 n n 
C28 H25 7FE sing 66 n n 
C28 H26 7FE sing 67 n n 
C29 H27 7FE sing 68 n n 
C29 H28 7FE sing 69 n n 
C30 H29 7FE sing 70 n n 
C30 H30 7FE sing 71 n n 
#
_atom_sites.entry_id                     5M4P 
_atom_sites.fract_transf_matrix[1][1]    0.009137 
_atom_sites.fract_transf_matrix[1][2]    0.005275 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010551 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 7FE A 1 401 1367 7FE UNL . 
C 3 TF3 A 1 402 1368 TF3 PFI . 
D 4 CL A 1 403 1369 CL CL . 
E 4 CL A 1 404 1370 CL CL . 
F 5 HOH A 1 501 2076 HOH HOH . 
F 5 HOH A 2 502 2107 HOH HOH . 
F 5 HOH A 3 503 2098 HOH HOH . 
F 5 HOH A 4 504 2011 HOH HOH . 
F 5 HOH A 5 505 2086 HOH HOH . 
F 5 HOH A 6 506 2058 HOH HOH . 
F 5 HOH A 7 507 2027 HOH HOH . 
F 5 HOH A 8 508 2090 HOH HOH . 
F 5 HOH A 9 509 2092 HOH HOH . 
F 5 HOH A 10 510 2037 HOH HOH . 
F 5 HOH A 11 511 2034 HOH HOH . 
F 5 HOH A 12 512 2055 HOH HOH . 
F 5 HOH A 13 513 2111 HOH HOH . 
F 5 HOH A 14 514 2117 HOH HOH . 
F 5 HOH A 15 515 2108 HOH HOH . 
F 5 HOH A 16 516 2075 HOH HOH . 
F 5 HOH A 17 517 2025 HOH HOH . 
F 5 HOH A 18 518 2049 HOH HOH . 
F 5 HOH A 19 519 2100 HOH HOH . 
F 5 HOH A 20 520 2116 HOH HOH . 
F 5 HOH A 21 521 2073 HOH HOH . 
F 5 HOH A 22 522 2033 HOH HOH . 
F 5 HOH A 23 523 2106 HOH HOH . 
F 5 HOH A 24 524 2019 HOH HOH . 
F 5 HOH A 25 525 2083 HOH HOH . 
F 5 HOH A 26 526 2021 HOH HOH . 
F 5 HOH A 27 527 2060 HOH HOH . 
F 5 HOH A 28 528 2101 HOH HOH . 
F 5 HOH A 29 529 2044 HOH HOH . 
F 5 HOH A 30 530 2079 HOH HOH . 
F 5 HOH A 31 531 2084 HOH HOH . 
F 5 HOH A 32 532 2057 HOH HOH . 
F 5 HOH A 33 533 2035 HOH HOH . 
F 5 HOH A 34 534 2018 HOH HOH . 
F 5 HOH A 35 535 2014 HOH HOH . 
F 5 HOH A 36 536 2077 HOH HOH . 
F 5 HOH A 37 537 2065 HOH HOH . 
F 5 HOH A 38 538 2082 HOH HOH . 
F 5 HOH A 39 539 2074 HOH HOH . 
F 5 HOH A 40 540 2026 HOH HOH . 
F 5 HOH A 41 541 2121 HOH HOH . 
F 5 HOH A 42 542 2045 HOH HOH . 
F 5 HOH A 43 543 2023 HOH HOH . 
F 5 HOH A 44 544 2008 HOH HOH . 
F 5 HOH A 45 545 2020 HOH HOH . 
F 5 HOH A 46 546 2028 HOH HOH . 
F 5 HOH A 47 547 2094 HOH HOH . 
F 5 HOH A 48 548 2056 HOH HOH . 
F 5 HOH A 49 549 2063 HOH HOH . 
F 5 HOH A 50 550 2051 HOH HOH . 
F 5 HOH A 51 551 2024 HOH HOH . 
F 5 HOH A 52 552 2062 HOH HOH . 
F 5 HOH A 53 553 2080 HOH HOH . 
F 5 HOH A 54 554 2007 HOH HOH . 
F 5 HOH A 55 555 2110 HOH HOH . 
F 5 HOH A 56 556 2064 HOH HOH . 
F 5 HOH A 57 557 2031 HOH HOH . 
F 5 HOH A 58 558 2013 HOH HOH . 
F 5 HOH A 59 559 2119 HOH HOH . 
F 5 HOH A 60 560 2089 HOH HOH . 
F 5 HOH A 61 561 2029 HOH HOH . 
F 5 HOH A 62 562 2040 HOH HOH . 
F 5 HOH A 63 563 2053 HOH HOH . 
F 5 HOH A 64 564 2032 HOH HOH . 
F 5 HOH A 65 565 2005 HOH HOH . 
F 5 HOH A 66 566 2003 HOH HOH . 
F 5 HOH A 67 567 2078 HOH HOH . 
F 5 HOH A 68 568 2069 HOH HOH . 
F 5 HOH A 69 569 2015 HOH HOH . 
F 5 HOH A 70 570 2093 HOH HOH . 
F 5 HOH A 71 571 2103 HOH HOH . 
F 5 HOH A 72 572 2006 HOH HOH . 
F 5 HOH A 73 573 2022 HOH HOH . 
F 5 HOH A 74 574 2067 HOH HOH . 
F 5 HOH A 75 575 2066 HOH HOH . 
F 5 HOH A 76 576 2041 HOH HOH . 
F 5 HOH A 77 577 2071 HOH HOH . 
F 5 HOH A 78 578 2118 HOH HOH . 
F 5 HOH A 79 579 2002 HOH HOH . 
F 5 HOH A 80 580 2048 HOH HOH . 
F 5 HOH A 81 581 2001 HOH HOH . 
F 5 HOH A 82 582 2047 HOH HOH . 
F 5 HOH A 83 583 2113 HOH HOH . 
F 5 HOH A 84 584 2088 HOH HOH . 
F 5 HOH A 85 585 2050 HOH HOH . 
F 5 HOH A 86 586 2091 HOH HOH . 
F 5 HOH A 87 587 2036 HOH HOH . 
F 5 HOH A 88 588 2099 HOH HOH . 
F 5 HOH A 89 589 2095 HOH HOH . 
F 5 HOH A 90 590 2039 HOH HOH . 
F 5 HOH A 91 591 2052 HOH HOH . 
F 5 HOH A 92 592 2030 HOH HOH . 
F 5 HOH A 93 593 2043 HOH HOH . 
F 5 HOH A 94 594 2012 HOH HOH . 
F 5 HOH A 95 595 2070 HOH HOH . 
F 5 HOH A 96 596 2115 HOH HOH . 
F 5 HOH A 97 597 2085 HOH HOH . 
F 5 HOH A 98 598 2054 HOH HOH . 
F 5 HOH A 99 599 2097 HOH HOH . 
F 5 HOH A 100 600 2120 HOH HOH . 
F 5 HOH A 101 601 2059 HOH HOH . 
F 5 HOH A 102 602 2042 HOH HOH . 
F 5 HOH A 103 603 2010 HOH HOH . 
F 5 HOH A 104 604 2009 HOH HOH . 
F 5 HOH A 105 605 2087 HOH HOH . 
F 5 HOH A 106 606 2038 HOH HOH . 
F 5 HOH A 107 607 2017 HOH HOH . 
F 5 HOH A 108 608 2081 HOH HOH . 
F 5 HOH A 109 609 2016 HOH HOH . 
F 5 HOH A 110 610 2102 HOH HOH . 
F 5 HOH A 111 611 2061 HOH HOH . 
F 5 HOH A 112 612 2004 HOH HOH . 
F 5 HOH A 113 613 2114 HOH HOH . 
F 5 HOH A 114 614 2105 HOH HOH . 
F 5 HOH A 115 615 2112 HOH HOH . 
F 5 HOH A 116 616 2068 HOH HOH . 
F 5 HOH A 117 617 2096 HOH HOH . 
F 5 HOH A 118 618 2046 HOH HOH . 
F 5 HOH A 119 619 2072 HOH HOH . 
F 5 HOH A 120 620 2104 HOH HOH . 
F 5 HOH A 121 621 2109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL 7FE . . . B 2 40.421 -31.024 10.31 1 62.58 ? CL 7FE 401 A 1 
HETATM 2 C C1 7FE . . . B 2 34.961 -38.233 10.132 1 38.37 ? C1 7FE 401 A 1 
HETATM 3 N N1 7FE . . . B 2 32.344 -34.056 10.064 1 39.87 ? N1 7FE 401 A 1 
HETATM 4 O O1 7FE . . . B 2 35.866 -39.152 9.958 1 32.8 ? O1 7FE 401 A 1 
HETATM 5 C C2 7FE . . . B 2 34.495 -37.947 11.385 1 38.05 ? C2 7FE 401 A 1 
HETATM 6 N N2 7FE . . . B 2 38.159 -32.105 9.383 1 63.97 ? N2 7FE 401 A 1 
HETATM 7 O O2 7FE . . . B 2 33.099 -36.703 12.755 1 42.64 ? O2 7FE 401 A 1 
HETATM 8 C C3 7FE . . . B 2 33.55 -36.977 11.557 1 38.55 ? C3 7FE 401 A 1 
HETATM 9 N N3 7FE . . . B 2 39.972 -32.161 7.963 1 60.24 ? N3 7FE 401 A 1 
HETATM 10 O O3 7FE . . . B 2 30.963 -35.505 10.998 1 37.6 ? O3 7FE 401 A 1 
HETATM 11 C C4 7FE . . . B 2 33.086 -36.289 10.477 1 41.25 ? C4 7FE 401 A 1 
HETATM 12 N N4 7FE . . . B 2 31.009 -28.137 13.808 1 75.05 ? N4 7FE 401 A 1 
HETATM 13 C C5 7FE . . . B 2 33.548 -36.607 9.224 1 41.72 ? C5 7FE 401 A 1 
HETATM 14 C C6 7FE . . . B 2 34.501 -37.566 9.047 1 39.22 ? C6 7FE 401 A 1 
HETATM 15 C C7 7FE . . . B 2 32.047 -35.227 10.567 1 40.32 ? C7 7FE 401 A 1 
HETATM 16 C C8 7FE . . . B 2 31.35 -33.033 10.005 1 45.59 ? C8 7FE 401 A 1 
HETATM 17 C C9 7FE . . . B 2 31.591 -31.97 11 1 47.52 ? C9 7FE 401 A 1 
HETATM 18 C C10 7FE . . . B 2 33.53 -33.738 9.637 1 42.4 ? C10 7FE 401 A 1 
HETATM 19 C C11 7FE . . . B 2 32.24 -30.825 10.645 1 44.2 ? C11 7FE 401 A 1 
HETATM 20 C C12 7FE . . . B 2 32.425 -29.869 11.607 1 54.97 ? C12 7FE 401 A 1 
HETATM 21 C C13 7FE . . . B 2 31.959 -30.075 12.886 1 57.29 ? C13 7FE 401 A 1 
HETATM 22 C C14 7FE . . . B 2 31.311 -31.219 13.222 1 52.27 ? C14 7FE 401 A 1 
HETATM 23 C C15 7FE . . . B 2 31.127 -32.169 12.268 1 50.91 ? C15 7FE 401 A 1 
HETATM 24 C C16 7FE . . . B 2 32.133 -29.033 13.947 1 66.1 ? C16 7FE 401 A 1 
HETATM 25 C C17 7FE . . . B 2 33.753 -33.263 8.371 1 40.41 ? C17 7FE 401 A 1 
HETATM 26 C C18 7FE . . . B 2 35.017 -32.911 7.952 1 39.6 ? C18 7FE 401 A 1 
HETATM 27 C C19 7FE . . . B 2 36.072 -33.022 8.817 1 50.21 ? C19 7FE 401 A 1 
HETATM 28 C C20 7FE . . . B 2 35.839 -33.502 10.085 1 47 ? C20 7FE 401 A 1 
HETATM 29 C C21 7FE . . . B 2 34.584 -33.832 10.502 1 40.03 ? C21 7FE 401 A 1 
HETATM 30 C C22 7FE . . . B 2 37.386 -32.717 8.484 1 56.87 ? C22 7FE 401 A 1 
HETATM 31 C C23 7FE . . . B 2 39.445 -31.81 9.133 1 68.26 ? C23 7FE 401 A 1 
HETATM 32 C C24 7FE . . . B 2 39.286 -32.78 7.04 1 57.92 ? C24 7FE 401 A 1 
HETATM 33 C C25 7FE . . . B 2 37.964 -33.077 7.278 1 59.18 ? C25 7FE 401 A 1 
HETATM 34 C C26 7FE . . . B 2 37.194 -33.781 6.21 1 57.28 ? C26 7FE 401 A 1 
HETATM 35 C C27 7FE . . . B 2 31.264 -27.425 12.576 1 80.85 ? C27 7FE 401 A 1 
HETATM 36 C C28 7FE . . . B 2 30.296 -26.278 12.649 1 78.92 ? C28 7FE 401 A 1 
HETATM 37 C C29 7FE . . . B 2 30.212 -26.005 14.13 1 76 ? C29 7FE 401 A 1 
HETATM 38 C C30 7FE . . . B 2 31.065 -27.072 14.773 1 77.64 ? C30 7FE 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#