data_5M4U # _model_server_result.job_id ckqdN2-jcmH9dlX5esqZ1Q _model_server_result.datetime_utc '2024-11-28 03:20:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5M4U # _exptl.entry_id 5M4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M4U _cell.length_a 46.85 _cell.length_b 83.78 _cell.length_c 142.344 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 168 n n C1 C2 GOL sing 169 n n C1 H11 GOL sing 170 n n C1 H12 GOL sing 171 n n O1 HO1 GOL sing 172 n n C2 O2 GOL sing 173 n n C2 C3 GOL sing 174 n n C2 H2 GOL sing 175 n n O2 HO2 GOL sing 176 n n C3 O3 GOL sing 177 n n C3 H31 GOL sing 178 n n C3 H32 GOL sing 179 n n O3 HO3 GOL sing 180 n n # _atom_sites.entry_id 5M4U _atom_sites.fract_transf_matrix[1][1] 0.021345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7FC A 1 401 1 7FC LIG . C 3 GOL A 1 402 2 GOL GOL . D 3 GOL A 1 403 3 GOL GOL . E 3 GOL A 1 404 5 GOL GOL . F 3 GOL A 1 405 6 GOL GOL . G 3 GOL A 1 406 7 GOL GOL . H 4 ACT A 1 407 8 ACT ACT . I 4 ACT A 1 408 9 ACT ACT . J 4 ACT A 1 409 10 ACT ACT . K 5 CL A 1 410 11 CL CL . L 6 SO4 A 1 411 12 SO4 SO4 . M 7 HOH A 1 501 271 HOH HOH . M 7 HOH A 2 502 249 HOH HOH . M 7 HOH A 3 503 53 HOH HOH . M 7 HOH A 4 504 242 HOH HOH . M 7 HOH A 5 505 255 HOH HOH . M 7 HOH A 6 506 304 HOH HOH . M 7 HOH A 7 507 251 HOH HOH . M 7 HOH A 8 508 207 HOH HOH . M 7 HOH A 9 509 83 HOH HOH . M 7 HOH A 10 510 305 HOH HOH . M 7 HOH A 11 511 48 HOH HOH . M 7 HOH A 12 512 176 HOH HOH . M 7 HOH A 13 513 103 HOH HOH . M 7 HOH A 14 514 221 HOH HOH . M 7 HOH A 15 515 65 HOH HOH . M 7 HOH A 16 516 235 HOH HOH . M 7 HOH A 17 517 296 HOH HOH . M 7 HOH A 18 518 162 HOH HOH . M 7 HOH A 19 519 27 HOH HOH . M 7 HOH A 20 520 200 HOH HOH . M 7 HOH A 21 521 299 HOH HOH . M 7 HOH A 22 522 191 HOH HOH . M 7 HOH A 23 523 105 HOH HOH . M 7 HOH A 24 524 54 HOH HOH . M 7 HOH A 25 525 289 HOH HOH . M 7 HOH A 26 526 94 HOH HOH . M 7 HOH A 27 527 118 HOH HOH . M 7 HOH A 28 528 209 HOH HOH . M 7 HOH A 29 529 80 HOH HOH . M 7 HOH A 30 530 38 HOH HOH . M 7 HOH A 31 531 90 HOH HOH . M 7 HOH A 32 532 68 HOH HOH . M 7 HOH A 33 533 34 HOH HOH . M 7 HOH A 34 534 43 HOH HOH . M 7 HOH A 35 535 195 HOH HOH . M 7 HOH A 36 536 290 HOH HOH . M 7 HOH A 37 537 32 HOH HOH . M 7 HOH A 38 538 182 HOH HOH . M 7 HOH A 39 539 81 HOH HOH . M 7 HOH A 40 540 82 HOH HOH . M 7 HOH A 41 541 63 HOH HOH . M 7 HOH A 42 542 14 HOH HOH . M 7 HOH A 43 543 152 HOH HOH . M 7 HOH A 44 544 117 HOH HOH . M 7 HOH A 45 545 283 HOH HOH . M 7 HOH A 46 546 226 HOH HOH . M 7 HOH A 47 547 61 HOH HOH . M 7 HOH A 48 548 111 HOH HOH . M 7 HOH A 49 549 301 HOH HOH . M 7 HOH A 50 550 25 HOH HOH . M 7 HOH A 51 551 67 HOH HOH . M 7 HOH A 52 552 236 HOH HOH . M 7 HOH A 53 553 297 HOH HOH . M 7 HOH A 54 554 170 HOH HOH . M 7 HOH A 55 555 11 HOH HOH . M 7 HOH A 56 556 114 HOH HOH . M 7 HOH A 57 557 262 HOH HOH . M 7 HOH A 58 558 56 HOH HOH . M 7 HOH A 59 559 16 HOH HOH . M 7 HOH A 60 560 241 HOH HOH . M 7 HOH A 61 561 185 HOH HOH . M 7 HOH A 62 562 137 HOH HOH . M 7 HOH A 63 563 216 HOH HOH . M 7 HOH A 64 564 31 HOH HOH . M 7 HOH A 65 565 126 HOH HOH . M 7 HOH A 66 566 169 HOH HOH . M 7 HOH A 67 567 122 HOH HOH . M 7 HOH A 68 568 22 HOH HOH . M 7 HOH A 69 569 72 HOH HOH . M 7 HOH A 70 570 109 HOH HOH . M 7 HOH A 71 571 17 HOH HOH . M 7 HOH A 72 572 140 HOH HOH . M 7 HOH A 73 573 15 HOH HOH . M 7 HOH A 74 574 277 HOH HOH . M 7 HOH A 75 575 101 HOH HOH . M 7 HOH A 76 576 28 HOH HOH . M 7 HOH A 77 577 70 HOH HOH . M 7 HOH A 78 578 196 HOH HOH . M 7 HOH A 79 579 33 HOH HOH . M 7 HOH A 80 580 12 HOH HOH . M 7 HOH A 81 581 278 HOH HOH . M 7 HOH A 82 582 21 HOH HOH . M 7 HOH A 83 583 37 HOH HOH . M 7 HOH A 84 584 136 HOH HOH . M 7 HOH A 85 585 259 HOH HOH . M 7 HOH A 86 586 55 HOH HOH . M 7 HOH A 87 587 6 HOH HOH . M 7 HOH A 88 588 57 HOH HOH . M 7 HOH A 89 589 79 HOH HOH . M 7 HOH A 90 590 39 HOH HOH . M 7 HOH A 91 591 9 HOH HOH . M 7 HOH A 92 592 194 HOH HOH . M 7 HOH A 93 593 66 HOH HOH . M 7 HOH A 94 594 179 HOH HOH . M 7 HOH A 95 595 2 HOH HOH . M 7 HOH A 96 596 24 HOH HOH . M 7 HOH A 97 597 248 HOH HOH . M 7 HOH A 98 598 3 HOH HOH . M 7 HOH A 99 599 202 HOH HOH . M 7 HOH A 100 600 315 HOH HOH . M 7 HOH A 101 601 91 HOH HOH . M 7 HOH A 102 602 183 HOH HOH . M 7 HOH A 103 603 100 HOH HOH . M 7 HOH A 104 604 45 HOH HOH . M 7 HOH A 105 605 59 HOH HOH . M 7 HOH A 106 606 106 HOH HOH . M 7 HOH A 107 607 47 HOH HOH . M 7 HOH A 108 608 181 HOH HOH . M 7 HOH A 109 609 154 HOH HOH . M 7 HOH A 110 610 95 HOH HOH . M 7 HOH A 111 611 163 HOH HOH . M 7 HOH A 112 612 208 HOH HOH . M 7 HOH A 113 613 218 HOH HOH . M 7 HOH A 114 614 19 HOH HOH . M 7 HOH A 115 615 49 HOH HOH . M 7 HOH A 116 616 7 HOH HOH . M 7 HOH A 117 617 88 HOH HOH . M 7 HOH A 118 618 40 HOH HOH . M 7 HOH A 119 619 10 HOH HOH . M 7 HOH A 120 620 173 HOH HOH . M 7 HOH A 121 621 35 HOH HOH . M 7 HOH A 122 622 64 HOH HOH . M 7 HOH A 123 623 189 HOH HOH . M 7 HOH A 124 624 198 HOH HOH . M 7 HOH A 125 625 110 HOH HOH . M 7 HOH A 126 626 135 HOH HOH . M 7 HOH A 127 627 58 HOH HOH . M 7 HOH A 128 628 238 HOH HOH . M 7 HOH A 129 629 172 HOH HOH . M 7 HOH A 130 630 86 HOH HOH . M 7 HOH A 131 631 60 HOH HOH . M 7 HOH A 132 632 138 HOH HOH . M 7 HOH A 133 633 204 HOH HOH . M 7 HOH A 134 634 98 HOH HOH . M 7 HOH A 135 635 139 HOH HOH . M 7 HOH A 136 636 121 HOH HOH . M 7 HOH A 137 637 1 HOH HOH . M 7 HOH A 138 638 36 HOH HOH . M 7 HOH A 139 639 214 HOH HOH . M 7 HOH A 140 640 13 HOH HOH . M 7 HOH A 141 641 8 HOH HOH . M 7 HOH A 142 642 71 HOH HOH . M 7 HOH A 143 643 286 HOH HOH . M 7 HOH A 144 644 46 HOH HOH . M 7 HOH A 145 645 127 HOH HOH . M 7 HOH A 146 646 96 HOH HOH . M 7 HOH A 147 647 5 HOH HOH . M 7 HOH A 148 648 85 HOH HOH . M 7 HOH A 149 649 30 HOH HOH . M 7 HOH A 150 650 165 HOH HOH . M 7 HOH A 151 651 275 HOH HOH . M 7 HOH A 152 652 193 HOH HOH . M 7 HOH A 153 653 4 HOH HOH . M 7 HOH A 154 654 294 HOH HOH . M 7 HOH A 155 655 74 HOH HOH . M 7 HOH A 156 656 284 HOH HOH . M 7 HOH A 157 657 267 HOH HOH . M 7 HOH A 158 658 125 HOH HOH . M 7 HOH A 159 659 123 HOH HOH . M 7 HOH A 160 660 112 HOH HOH . M 7 HOH A 161 661 84 HOH HOH . M 7 HOH A 162 662 62 HOH HOH . M 7 HOH A 163 663 291 HOH HOH . M 7 HOH A 164 664 257 HOH HOH . M 7 HOH A 165 665 23 HOH HOH . M 7 HOH A 166 666 131 HOH HOH . M 7 HOH A 167 667 295 HOH HOH . M 7 HOH A 168 668 213 HOH HOH . M 7 HOH A 169 669 177 HOH HOH . M 7 HOH A 170 670 75 HOH HOH . M 7 HOH A 171 671 20 HOH HOH . M 7 HOH A 172 672 307 HOH HOH . M 7 HOH A 173 673 157 HOH HOH . M 7 HOH A 174 674 232 HOH HOH . M 7 HOH A 175 675 104 HOH HOH . M 7 HOH A 176 676 253 HOH HOH . M 7 HOH A 177 677 26 HOH HOH . M 7 HOH A 178 678 93 HOH HOH . M 7 HOH A 179 679 270 HOH HOH . M 7 HOH A 180 680 144 HOH HOH . M 7 HOH A 181 681 272 HOH HOH . M 7 HOH A 182 682 219 HOH HOH . M 7 HOH A 183 683 292 HOH HOH . M 7 HOH A 184 684 42 HOH HOH . M 7 HOH A 185 685 269 HOH HOH . M 7 HOH A 186 686 250 HOH HOH . M 7 HOH A 187 687 227 HOH HOH . M 7 HOH A 188 688 73 HOH HOH . M 7 HOH A 189 689 223 HOH HOH . M 7 HOH A 190 690 160 HOH HOH . M 7 HOH A 191 691 133 HOH HOH . M 7 HOH A 192 692 197 HOH HOH . M 7 HOH A 193 693 50 HOH HOH . M 7 HOH A 194 694 18 HOH HOH . M 7 HOH A 195 695 99 HOH HOH . M 7 HOH A 196 696 205 HOH HOH . M 7 HOH A 197 697 246 HOH HOH . M 7 HOH A 198 698 224 HOH HOH . M 7 HOH A 199 699 244 HOH HOH . M 7 HOH A 200 700 156 HOH HOH . M 7 HOH A 201 701 119 HOH HOH . M 7 HOH A 202 702 313 HOH HOH . M 7 HOH A 203 703 52 HOH HOH . M 7 HOH A 204 704 130 HOH HOH . M 7 HOH A 205 705 155 HOH HOH . M 7 HOH A 206 706 288 HOH HOH . M 7 HOH A 207 707 281 HOH HOH . M 7 HOH A 208 708 92 HOH HOH . M 7 HOH A 209 709 108 HOH HOH . M 7 HOH A 210 710 76 HOH HOH . M 7 HOH A 211 711 134 HOH HOH . M 7 HOH A 212 712 237 HOH HOH . M 7 HOH A 213 713 225 HOH HOH . M 7 HOH A 214 714 201 HOH HOH . M 7 HOH A 215 715 124 HOH HOH . M 7 HOH A 216 716 212 HOH HOH . M 7 HOH A 217 717 168 HOH HOH . M 7 HOH A 218 718 254 HOH HOH . M 7 HOH A 219 719 44 HOH HOH . M 7 HOH A 220 720 158 HOH HOH . M 7 HOH A 221 721 190 HOH HOH . M 7 HOH A 222 722 78 HOH HOH . M 7 HOH A 223 723 247 HOH HOH . M 7 HOH A 224 724 312 HOH HOH . M 7 HOH A 225 725 167 HOH HOH . M 7 HOH A 226 726 41 HOH HOH . M 7 HOH A 227 727 306 HOH HOH . M 7 HOH A 228 728 192 HOH HOH . M 7 HOH A 229 729 77 HOH HOH . M 7 HOH A 230 730 268 HOH HOH . M 7 HOH A 231 731 222 HOH HOH . M 7 HOH A 232 732 145 HOH HOH . M 7 HOH A 233 733 228 HOH HOH . M 7 HOH A 234 734 245 HOH HOH . M 7 HOH A 235 735 89 HOH HOH . M 7 HOH A 236 736 51 HOH HOH . M 7 HOH A 237 737 116 HOH HOH . M 7 HOH A 238 738 184 HOH HOH . M 7 HOH A 239 739 256 HOH HOH . M 7 HOH A 240 740 175 HOH HOH . M 7 HOH A 241 741 311 HOH HOH . M 7 HOH A 242 742 231 HOH HOH . M 7 HOH A 243 743 153 HOH HOH . M 7 HOH A 244 744 150 HOH HOH . M 7 HOH A 245 745 87 HOH HOH . M 7 HOH A 246 746 252 HOH HOH . M 7 HOH A 247 747 178 HOH HOH . M 7 HOH A 248 748 309 HOH HOH . M 7 HOH A 249 749 314 HOH HOH . M 7 HOH A 250 750 188 HOH HOH . M 7 HOH A 251 751 298 HOH HOH . M 7 HOH A 252 752 141 HOH HOH . M 7 HOH A 253 753 230 HOH HOH . M 7 HOH A 254 754 217 HOH HOH . M 7 HOH A 255 755 146 HOH HOH . M 7 HOH A 256 756 229 HOH HOH . M 7 HOH A 257 757 151 HOH HOH . M 7 HOH A 258 758 265 HOH HOH . M 7 HOH A 259 759 115 HOH HOH . M 7 HOH A 260 760 293 HOH HOH . M 7 HOH A 261 761 128 HOH HOH . M 7 HOH A 262 762 302 HOH HOH . M 7 HOH A 263 763 303 HOH HOH . M 7 HOH A 264 764 164 HOH HOH . M 7 HOH A 265 765 171 HOH HOH . M 7 HOH A 266 766 159 HOH HOH . M 7 HOH A 267 767 161 HOH HOH . M 7 HOH A 268 768 132 HOH HOH . M 7 HOH A 269 769 261 HOH HOH . M 7 HOH A 270 770 97 HOH HOH . M 7 HOH A 271 771 266 HOH HOH . M 7 HOH A 272 772 240 HOH HOH . M 7 HOH A 273 773 143 HOH HOH . M 7 HOH A 274 774 282 HOH HOH . M 7 HOH A 275 775 129 HOH HOH . M 7 HOH A 276 776 279 HOH HOH . M 7 HOH A 277 777 147 HOH HOH . M 7 HOH A 278 778 29 HOH HOH . M 7 HOH A 279 779 107 HOH HOH . M 7 HOH A 280 780 166 HOH HOH . M 7 HOH A 281 781 258 HOH HOH . M 7 HOH A 282 782 300 HOH HOH . M 7 HOH A 283 783 260 HOH HOH . M 7 HOH A 284 784 274 HOH HOH . M 7 HOH A 285 785 148 HOH HOH . M 7 HOH A 286 786 273 HOH HOH . M 7 HOH A 287 787 263 HOH HOH . M 7 HOH A 288 788 280 HOH HOH . M 7 HOH A 289 789 233 HOH HOH . M 7 HOH A 290 790 102 HOH HOH . M 7 HOH A 291 791 285 HOH HOH . M 7 HOH A 292 792 120 HOH HOH . M 7 HOH A 293 793 69 HOH HOH . M 7 HOH A 294 794 142 HOH HOH . M 7 HOH A 295 795 180 HOH HOH . M 7 HOH A 296 796 113 HOH HOH . M 7 HOH A 297 797 310 HOH HOH . M 7 HOH A 298 798 308 HOH HOH . M 7 HOH A 299 799 276 HOH HOH . M 7 HOH A 300 800 210 HOH HOH . M 7 HOH A 301 801 264 HOH HOH . M 7 HOH A 302 802 174 HOH HOH . M 7 HOH A 303 803 220 HOH HOH . M 7 HOH A 304 804 215 HOH HOH . M 7 HOH A 305 805 239 HOH HOH . M 7 HOH A 306 806 149 HOH HOH . M 7 HOH A 307 807 199 HOH HOH . M 7 HOH A 308 808 234 HOH HOH . M 7 HOH A 309 809 287 HOH HOH . M 7 HOH A 310 810 211 HOH HOH . M 7 HOH A 311 811 243 HOH HOH . M 7 HOH A 312 812 186 HOH HOH . M 7 HOH A 313 813 187 HOH HOH . M 7 HOH A 314 814 206 HOH HOH . M 7 HOH A 315 815 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -5.218 -8.885 -39.145 1 63.76 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 -5.491 -8.28 -37.899 1 56.15 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 -4.953 -10.372 -38.94 1 62.9 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 -6.024 -11.137 -39.45 1 58.58 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 -3.629 -10.771 -39.587 1 60.18 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 -3.264 -12.077 -39.192 1 54.53 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #