data_5M51 # _model_server_result.job_id ue7ELytPi1UHaENyazJSDQ _model_server_result.datetime_utc '2025-07-08 04:26:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5M51 # _exptl.entry_id 5M51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[6-(cyclohexylmethoxy)-9~{H}-purin-2-yl]amino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M51 _cell.length_a 56.717 _cell.length_b 73.736 _cell.length_c 75.076 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N6 O2' _chem_comp.formula_weight 366.417 _chem_comp.id NU6 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[6-(cyclohexylmethoxy)-9~{H}-purin-2-yl]amino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N15 NU6 doub 237 n y C14 N13 NU6 sing 238 n y N15 C16 NU6 sing 239 n y C22 C21 NU6 sing 240 n n C22 C23 NU6 sing 241 n n C21 C20 NU6 sing 242 n n N13 C12 NU6 sing 243 n y C23 C24 NU6 sing 244 n n C16 C12 NU6 doub 245 n y C16 C17 NU6 sing 246 n y O18 C17 NU6 sing 247 n n O18 C19 NU6 sing 248 n n C12 N11 NU6 sing 249 n y C17 N26 NU6 doub 250 n y C20 C19 NU6 sing 251 n n C20 C25 NU6 sing 252 n n C24 C25 NU6 sing 253 n n N11 C10 NU6 doub 254 n y N26 C10 NU6 sing 255 n y C10 N09 NU6 sing 256 n n N09 C08 NU6 sing 257 n n N03 C02 NU6 sing 258 n n C27 C08 NU6 doub 259 n y C27 C04 NU6 sing 260 n y C08 C07 NU6 sing 261 n y C02 C04 NU6 sing 262 n n C02 O01 NU6 doub 263 n n C04 C05 NU6 doub 264 n y C07 C06 NU6 doub 265 n y C05 C06 NU6 sing 266 n y N03 H1 NU6 sing 267 n n N03 H2 NU6 sing 268 n n C05 H3 NU6 sing 269 n n C06 H4 NU6 sing 270 n n C07 H5 NU6 sing 271 n n N09 H6 NU6 sing 272 n n N13 H7 NU6 sing 273 n n C14 H8 NU6 sing 274 n n C19 H10 NU6 sing 275 n n C19 H11 NU6 sing 276 n n C20 H12 NU6 sing 277 n n C21 H13 NU6 sing 278 n n C21 H14 NU6 sing 279 n n C22 H15 NU6 sing 280 n n C22 H16 NU6 sing 281 n n C23 H17 NU6 sing 282 n n C23 H18 NU6 sing 283 n n C24 H19 NU6 sing 284 n n C24 H20 NU6 sing 285 n n C25 H21 NU6 sing 286 n n C25 H22 NU6 sing 287 n n C27 H23 NU6 sing 288 n n # _atom_sites.entry_id 5M51 _atom_sites.fract_transf_matrix[1][1] 0.017631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NU6 A 1 301 1 NU6 NU6 . C 3 HOH A 1 401 55 HOH HOH . C 3 HOH A 2 402 9 HOH HOH . C 3 HOH A 3 403 58 HOH HOH . C 3 HOH A 4 404 47 HOH HOH . C 3 HOH A 5 405 28 HOH HOH . C 3 HOH A 6 406 19 HOH HOH . C 3 HOH A 7 407 53 HOH HOH . C 3 HOH A 8 408 46 HOH HOH . C 3 HOH A 9 409 12 HOH HOH . C 3 HOH A 10 410 74 HOH HOH . C 3 HOH A 11 411 43 HOH HOH . C 3 HOH A 12 412 4 HOH HOH . C 3 HOH A 13 413 15 HOH HOH . C 3 HOH A 14 414 76 HOH HOH . C 3 HOH A 15 415 3 HOH HOH . C 3 HOH A 16 416 34 HOH HOH . C 3 HOH A 17 417 54 HOH HOH . C 3 HOH A 18 418 59 HOH HOH . C 3 HOH A 19 419 22 HOH HOH . C 3 HOH A 20 420 72 HOH HOH . C 3 HOH A 21 421 41 HOH HOH . C 3 HOH A 22 422 20 HOH HOH . C 3 HOH A 23 423 38 HOH HOH . C 3 HOH A 24 424 44 HOH HOH . C 3 HOH A 25 425 33 HOH HOH . C 3 HOH A 26 426 75 HOH HOH . C 3 HOH A 27 427 55 HOH HOH . C 3 HOH A 28 428 37 HOH HOH . C 3 HOH A 29 429 57 HOH HOH . C 3 HOH A 30 430 53 HOH HOH . C 3 HOH A 31 431 45 HOH HOH . C 3 HOH A 32 432 65 HOH HOH . C 3 HOH A 33 433 15 HOH HOH . C 3 HOH A 34 434 18 HOH HOH . C 3 HOH A 35 435 61 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 19 HOH HOH . C 3 HOH A 38 438 57 HOH HOH . C 3 HOH A 39 439 4 HOH HOH . C 3 HOH A 40 440 44 HOH HOH . C 3 HOH A 41 441 47 HOH HOH . C 3 HOH A 42 442 32 HOH HOH . C 3 HOH A 43 443 33 HOH HOH . C 3 HOH A 44 444 56 HOH HOH . C 3 HOH A 45 445 27 HOH HOH . C 3 HOH A 46 446 49 HOH HOH . C 3 HOH A 47 447 14 HOH HOH . C 3 HOH A 48 448 26 HOH HOH . C 3 HOH A 49 449 1 HOH HOH . C 3 HOH A 50 450 8 HOH HOH . C 3 HOH A 51 451 59 HOH HOH . C 3 HOH A 52 452 30 HOH HOH . C 3 HOH A 53 453 28 HOH HOH . C 3 HOH A 54 454 3 HOH HOH . C 3 HOH A 55 455 51 HOH HOH . C 3 HOH A 56 456 35 HOH HOH . C 3 HOH A 57 457 5 HOH HOH . C 3 HOH A 58 458 14 HOH HOH . C 3 HOH A 59 459 39 HOH HOH . C 3 HOH A 60 460 62 HOH HOH . C 3 HOH A 61 461 39 HOH HOH . C 3 HOH A 62 462 30 HOH HOH . C 3 HOH A 63 463 23 HOH HOH . C 3 HOH A 64 464 70 HOH HOH . C 3 HOH A 65 465 66 HOH HOH . C 3 HOH A 66 466 29 HOH HOH . C 3 HOH A 67 467 9 HOH HOH . C 3 HOH A 68 468 60 HOH HOH . C 3 HOH A 69 469 31 HOH HOH . C 3 HOH A 70 470 10 HOH HOH . C 3 HOH A 71 471 12 HOH HOH . C 3 HOH A 72 472 17 HOH HOH . C 3 HOH A 73 473 42 HOH HOH . C 3 HOH A 74 474 71 HOH HOH . C 3 HOH A 75 475 31 HOH HOH . C 3 HOH A 76 476 64 HOH HOH . C 3 HOH A 77 477 27 HOH HOH . C 3 HOH A 78 478 68 HOH HOH . C 3 HOH A 79 479 8 HOH HOH . C 3 HOH A 80 480 34 HOH HOH . C 3 HOH A 81 481 2 HOH HOH . C 3 HOH A 82 482 24 HOH HOH . C 3 HOH A 83 483 67 HOH HOH . C 3 HOH A 84 484 51 HOH HOH . C 3 HOH A 85 485 22 HOH HOH . C 3 HOH A 86 486 62 HOH HOH . C 3 HOH A 87 487 73 HOH HOH . C 3 HOH A 88 488 13 HOH HOH . C 3 HOH A 89 489 56 HOH HOH . C 3 HOH A 90 490 11 HOH HOH . C 3 HOH A 91 491 25 HOH HOH . C 3 HOH A 92 492 23 HOH HOH . C 3 HOH A 93 493 63 HOH HOH . C 3 HOH A 94 494 63 HOH HOH . C 3 HOH A 95 495 38 HOH HOH . C 3 HOH A 96 496 69 HOH HOH . C 3 HOH A 97 497 58 HOH HOH . C 3 HOH A 98 498 5 HOH HOH . C 3 HOH A 99 499 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 NU6 . . . B 2 29.519 -4.731 17.446 1 57.62 ? O01 NU6 301 A 1 HETATM 2 C C02 NU6 . . . B 2 29.914 -3.981 16.574 1 52.46 ? C02 NU6 301 A 1 HETATM 3 N N03 NU6 . . . B 2 29.134 -3.761 15.405 1 51.99 ? N03 NU6 301 A 1 HETATM 4 C C04 NU6 . . . B 2 31.241 -3.285 16.742 1 52.01 ? C04 NU6 301 A 1 HETATM 5 C C05 NU6 . . . B 2 31.464 -2.455 17.835 1 49.48 ? C05 NU6 301 A 1 HETATM 6 C C06 NU6 . . . B 2 32.687 -1.822 17.976 1 45.33 ? C06 NU6 301 A 1 HETATM 7 C C07 NU6 . . . B 2 33.677 -2.016 17.023 1 46.56 ? C07 NU6 301 A 1 HETATM 8 C C08 NU6 . . . B 2 33.458 -2.841 15.922 1 46.58 ? C08 NU6 301 A 1 HETATM 9 N N09 NU6 . . . B 2 34.522 -3.006 14.975 1 45.34 ? N09 NU6 301 A 1 HETATM 10 C C10 NU6 . . . B 2 34.483 -3.691 13.722 1 43.11 ? C10 NU6 301 A 1 HETATM 11 N N11 NU6 . . . B 2 35.553 -3.571 12.95 1 43.15 ? N11 NU6 301 A 1 HETATM 12 C C12 NU6 . . . B 2 35.624 -4.197 11.726 1 39.9 ? C12 NU6 301 A 1 HETATM 13 N N13 NU6 . . . B 2 36.589 -4.231 10.748 1 38.93 ? N13 NU6 301 A 1 HETATM 14 C C14 NU6 . . . B 2 36.15 -5.001 9.73 1 38.07 ? C14 NU6 301 A 1 HETATM 15 N N15 NU6 . . . B 2 34.92 -5.458 10.04 1 38.75 ? N15 NU6 301 A 1 HETATM 16 C C16 NU6 . . . B 2 34.575 -4.965 11.272 1 39.18 ? C16 NU6 301 A 1 HETATM 17 C C17 NU6 . . . B 2 33.452 -5.075 12.15 1 42.39 ? C17 NU6 301 A 1 HETATM 18 O O18 NU6 . . . B 2 32.369 -5.851 11.712 1 44.3 ? O18 NU6 301 A 1 HETATM 19 C C19 NU6 . . . B 2 31.565 -6.462 12.695 1 51.36 ? C19 NU6 301 A 1 HETATM 20 C C20 NU6 . . . B 2 30.16 -6.329 12.153 1 47.93 ? C20 NU6 301 A 1 HETATM 21 C C21 NU6 . . . B 2 30.177 -6.698 10.677 1 49.98 ? C21 NU6 301 A 1 HETATM 22 C C22 NU6 . . . B 2 29.946 -8.164 10.394 1 58.27 ? C22 NU6 301 A 1 HETATM 23 C C23 NU6 . . . B 2 28.732 -8.686 11.13 1 56.78 ? C23 NU6 301 A 1 HETATM 24 C C24 NU6 . . . B 2 28.915 -8.514 12.62 1 58.37 ? C24 NU6 301 A 1 HETATM 25 C C25 NU6 . . . B 2 29.138 -7.066 13.005 1 56.69 ? C25 NU6 301 A 1 HETATM 26 N N26 NU6 . . . B 2 33.453 -4.431 13.331 1 39.58 ? N26 NU6 301 A 1 HETATM 27 C C27 NU6 . . . B 2 32.234 -3.475 15.791 1 46.14 ? C27 NU6 301 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #