data_5M53 # _model_server_result.job_id DQAmisjObt8EKdT088KQ6A _model_server_result.datetime_utc '2025-07-08 02:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5M53 # _exptl.entry_id 5M53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.47 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[6-(cyclohexylmethoxy)-7~{H}-purin-2-yl]amino]-~{N},~{N}-dimethyl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M53 _cell.length_a 56.416 _cell.length_b 73.491 _cell.length_c 74.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H26 N6 O2' _chem_comp.formula_weight 394.47 _chem_comp.id 7GJ _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[6-(cyclohexylmethoxy)-7~{H}-purin-2-yl]amino]-~{N},~{N}-dimethyl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N7 7GJ sing 1 n y C8 N9 7GJ doub 2 n y N7 C5 7GJ sing 3 n y CAJ CAL 7GJ sing 4 n n CAJ CAI 7GJ sing 5 n n N9 C4 7GJ sing 6 n y CAL CBB 7GJ sing 7 n n CAI CAK 7GJ sing 8 n n C5 C4 7GJ doub 9 n y C5 C6 7GJ sing 10 n y O6 C6 7GJ sing 11 n n O6 CAN 7GJ sing 12 n n C4 N3 7GJ sing 13 n y C6 N1 7GJ doub 14 n y CBB CAN 7GJ sing 15 n n CBB CAM 7GJ sing 16 n n CAK CAM 7GJ sing 17 n n N3 C2 7GJ doub 18 n y N1 C2 7GJ sing 19 n y C2 N2 7GJ sing 20 n n CAA NBC 7GJ sing 21 n n N2 CAV 7GJ sing 22 n n CAB NBC 7GJ sing 23 n n NBC CAU 7GJ sing 24 n n CAH CAV 7GJ doub 25 n y CAH CAW 7GJ sing 26 n y CAV CAE 7GJ sing 27 n y CAU CAW 7GJ sing 28 n n CAU OAC 7GJ doub 29 n n CAW CAF 7GJ doub 30 n y CAE CAD 7GJ doub 31 n y CAF CAD 7GJ sing 32 n y C8 H1 7GJ sing 33 n n N2 H2 7GJ sing 34 n n CAL H3 7GJ sing 35 n n CAL H4 7GJ sing 36 n n CAJ H5 7GJ sing 37 n n CAJ H6 7GJ sing 38 n n CAI H7 7GJ sing 39 n n CAI H8 7GJ sing 40 n n CAK H9 7GJ sing 41 n n CAK H10 7GJ sing 42 n n CAM H11 7GJ sing 43 n n CAM H12 7GJ sing 44 n n CBB H13 7GJ sing 45 n n CAN H14 7GJ sing 46 n n CAN H15 7GJ sing 47 n n N7 H16 7GJ sing 48 n n CAH H18 7GJ sing 49 n n CAE H19 7GJ sing 50 n n CAD H20 7GJ sing 51 n n CAF H21 7GJ sing 52 n n CAB H22 7GJ sing 53 n n CAB H23 7GJ sing 54 n n CAB H24 7GJ sing 55 n n CAA H25 7GJ sing 56 n n CAA H26 7GJ sing 57 n n CAA H27 7GJ sing 58 n n # _atom_sites.entry_id 5M53 _atom_sites.fract_transf_matrix[1][1] 0.017726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7GJ A 1 301 1 7GJ DRG . C 3 PEG A 1 302 1 PEG PEG . D 3 PEG A 1 303 2 PEG PEG . E 4 EDO A 1 304 1 EDO EDO . F 4 EDO A 1 305 2 EDO EDO . G 4 EDO A 1 306 3 EDO EDO . H 4 EDO A 1 307 4 EDO EDO . I 4 EDO A 1 308 7 EDO EDO . J 4 EDO A 1 309 8 EDO EDO . K 5 PO4 A 1 310 1 PO4 PO4 . L 5 PO4 A 1 311 2 PO4 PO4 . M 5 PO4 A 1 312 3 PO4 PO4 . N 5 PO4 A 1 313 4 PO4 PO4 . O 6 HOH A 1 401 198 HOH HOH . O 6 HOH A 2 402 128 HOH HOH . O 6 HOH A 3 403 77 HOH HOH . O 6 HOH A 4 404 78 HOH HOH . O 6 HOH A 5 405 142 HOH HOH . O 6 HOH A 6 406 121 HOH HOH . O 6 HOH A 7 407 47 HOH HOH . O 6 HOH A 8 408 169 HOH HOH . O 6 HOH A 9 409 181 HOH HOH . O 6 HOH A 10 410 36 HOH HOH . O 6 HOH A 11 411 44 HOH HOH . O 6 HOH A 12 412 64 HOH HOH . O 6 HOH A 13 413 69 HOH HOH . O 6 HOH A 14 414 29 HOH HOH . O 6 HOH A 15 415 65 HOH HOH . O 6 HOH A 16 416 108 HOH HOH . O 6 HOH A 17 417 66 HOH HOH . O 6 HOH A 18 418 104 HOH HOH . O 6 HOH A 19 419 33 HOH HOH . O 6 HOH A 20 420 157 HOH HOH . O 6 HOH A 21 421 57 HOH HOH . O 6 HOH A 22 422 94 HOH HOH . O 6 HOH A 23 423 163 HOH HOH . O 6 HOH A 24 424 15 HOH HOH . O 6 HOH A 25 425 70 HOH HOH . O 6 HOH A 26 426 6 HOH HOH . O 6 HOH A 27 427 59 HOH HOH . O 6 HOH A 28 428 86 HOH HOH . O 6 HOH A 29 429 24 HOH HOH . O 6 HOH A 30 430 54 HOH HOH . O 6 HOH A 31 431 9 HOH HOH . O 6 HOH A 32 432 43 HOH HOH . O 6 HOH A 33 433 40 HOH HOH . O 6 HOH A 34 434 12 HOH HOH . O 6 HOH A 35 435 39 HOH HOH . O 6 HOH A 36 436 22 HOH HOH . O 6 HOH A 37 437 178 HOH HOH . O 6 HOH A 38 438 167 HOH HOH . O 6 HOH A 39 439 51 HOH HOH . O 6 HOH A 40 440 53 HOH HOH . O 6 HOH A 41 441 192 HOH HOH . O 6 HOH A 42 442 109 HOH HOH . O 6 HOH A 43 443 2 HOH HOH . O 6 HOH A 44 444 71 HOH HOH . O 6 HOH A 45 445 58 HOH HOH . O 6 HOH A 46 446 67 HOH HOH . O 6 HOH A 47 447 25 HOH HOH . O 6 HOH A 48 448 16 HOH HOH . O 6 HOH A 49 449 80 HOH HOH . O 6 HOH A 50 450 63 HOH HOH . O 6 HOH A 51 451 32 HOH HOH . O 6 HOH A 52 452 18 HOH HOH . O 6 HOH A 53 453 26 HOH HOH . O 6 HOH A 54 454 81 HOH HOH . O 6 HOH A 55 455 144 HOH HOH . O 6 HOH A 56 456 11 HOH HOH . O 6 HOH A 57 457 7 HOH HOH . O 6 HOH A 58 458 31 HOH HOH . O 6 HOH A 59 459 119 HOH HOH . O 6 HOH A 60 460 115 HOH HOH . O 6 HOH A 61 461 41 HOH HOH . O 6 HOH A 62 462 52 HOH HOH . O 6 HOH A 63 463 5 HOH HOH . O 6 HOH A 64 464 10 HOH HOH . O 6 HOH A 65 465 45 HOH HOH . O 6 HOH A 66 466 34 HOH HOH . O 6 HOH A 67 467 20 HOH HOH . O 6 HOH A 68 468 61 HOH HOH . O 6 HOH A 69 469 4 HOH HOH . O 6 HOH A 70 470 79 HOH HOH . O 6 HOH A 71 471 151 HOH HOH . O 6 HOH A 72 472 187 HOH HOH . O 6 HOH A 73 473 30 HOH HOH . O 6 HOH A 74 474 23 HOH HOH . O 6 HOH A 75 475 1 HOH HOH . O 6 HOH A 76 476 17 HOH HOH . O 6 HOH A 77 477 125 HOH HOH . O 6 HOH A 78 478 161 HOH HOH . O 6 HOH A 79 479 106 HOH HOH . O 6 HOH A 80 480 13 HOH HOH . O 6 HOH A 81 481 49 HOH HOH . O 6 HOH A 82 482 137 HOH HOH . O 6 HOH A 83 483 195 HOH HOH . O 6 HOH A 84 484 124 HOH HOH . O 6 HOH A 85 485 127 HOH HOH . O 6 HOH A 86 486 46 HOH HOH . O 6 HOH A 87 487 135 HOH HOH . O 6 HOH A 88 488 122 HOH HOH . O 6 HOH A 89 489 3 HOH HOH . O 6 HOH A 90 490 103 HOH HOH . O 6 HOH A 91 491 92 HOH HOH . O 6 HOH A 92 492 74 HOH HOH . O 6 HOH A 93 493 88 HOH HOH . O 6 HOH A 94 494 164 HOH HOH . O 6 HOH A 95 495 56 HOH HOH . O 6 HOH A 96 496 139 HOH HOH . O 6 HOH A 97 497 37 HOH HOH . O 6 HOH A 98 498 107 HOH HOH . O 6 HOH A 99 499 82 HOH HOH . O 6 HOH A 100 500 38 HOH HOH . O 6 HOH A 101 501 35 HOH HOH . O 6 HOH A 102 502 171 HOH HOH . O 6 HOH A 103 503 14 HOH HOH . O 6 HOH A 104 504 72 HOH HOH . O 6 HOH A 105 505 120 HOH HOH . O 6 HOH A 106 506 27 HOH HOH . O 6 HOH A 107 507 114 HOH HOH . O 6 HOH A 108 508 117 HOH HOH . O 6 HOH A 109 509 105 HOH HOH . O 6 HOH A 110 510 159 HOH HOH . O 6 HOH A 111 511 60 HOH HOH . O 6 HOH A 112 512 68 HOH HOH . O 6 HOH A 113 513 55 HOH HOH . O 6 HOH A 114 514 133 HOH HOH . O 6 HOH A 115 515 19 HOH HOH . O 6 HOH A 116 516 152 HOH HOH . O 6 HOH A 117 517 73 HOH HOH . O 6 HOH A 118 518 21 HOH HOH . O 6 HOH A 119 519 149 HOH HOH . O 6 HOH A 120 520 99 HOH HOH . O 6 HOH A 121 521 168 HOH HOH . O 6 HOH A 122 522 112 HOH HOH . O 6 HOH A 123 523 75 HOH HOH . O 6 HOH A 124 524 111 HOH HOH . O 6 HOH A 125 525 8 HOH HOH . O 6 HOH A 126 526 145 HOH HOH . O 6 HOH A 127 527 154 HOH HOH . O 6 HOH A 128 528 48 HOH HOH . O 6 HOH A 129 529 170 HOH HOH . O 6 HOH A 130 530 162 HOH HOH . O 6 HOH A 131 531 136 HOH HOH . O 6 HOH A 132 532 113 HOH HOH . O 6 HOH A 133 533 158 HOH HOH . O 6 HOH A 134 534 165 HOH HOH . O 6 HOH A 135 535 177 HOH HOH . O 6 HOH A 136 536 188 HOH HOH . O 6 HOH A 137 537 50 HOH HOH . O 6 HOH A 138 538 193 HOH HOH . O 6 HOH A 139 539 42 HOH HOH . O 6 HOH A 140 540 95 HOH HOH . O 6 HOH A 141 541 166 HOH HOH . O 6 HOH A 142 542 97 HOH HOH . O 6 HOH A 143 543 197 HOH HOH . O 6 HOH A 144 544 140 HOH HOH . O 6 HOH A 145 545 28 HOH HOH . O 6 HOH A 146 546 98 HOH HOH . O 6 HOH A 147 547 93 HOH HOH . O 6 HOH A 148 548 174 HOH HOH . O 6 HOH A 149 549 62 HOH HOH . O 6 HOH A 150 550 182 HOH HOH . O 6 HOH A 151 551 116 HOH HOH . O 6 HOH A 152 552 180 HOH HOH . O 6 HOH A 153 553 176 HOH HOH . O 6 HOH A 154 554 129 HOH HOH . O 6 HOH A 155 555 101 HOH HOH . O 6 HOH A 156 556 175 HOH HOH . O 6 HOH A 157 557 130 HOH HOH . O 6 HOH A 158 558 89 HOH HOH . O 6 HOH A 159 559 148 HOH HOH . O 6 HOH A 160 560 160 HOH HOH . O 6 HOH A 161 561 196 HOH HOH . O 6 HOH A 162 562 83 HOH HOH . O 6 HOH A 163 563 186 HOH HOH . O 6 HOH A 164 564 138 HOH HOH . O 6 HOH A 165 565 126 HOH HOH . O 6 HOH A 166 566 102 HOH HOH . O 6 HOH A 167 567 84 HOH HOH . O 6 HOH A 168 568 156 HOH HOH . O 6 HOH A 169 569 155 HOH HOH . O 6 HOH A 170 570 190 HOH HOH . O 6 HOH A 171 571 141 HOH HOH . O 6 HOH A 172 572 118 HOH HOH . O 6 HOH A 173 573 147 HOH HOH . O 6 HOH A 174 574 191 HOH HOH . O 6 HOH A 175 575 76 HOH HOH . O 6 HOH A 176 576 96 HOH HOH . O 6 HOH A 177 577 146 HOH HOH . O 6 HOH A 178 578 194 HOH HOH . O 6 HOH A 179 579 172 HOH HOH . O 6 HOH A 180 580 185 HOH HOH . O 6 HOH A 181 581 199 HOH HOH . O 6 HOH A 182 582 91 HOH HOH . O 6 HOH A 183 583 110 HOH HOH . O 6 HOH A 184 584 100 HOH HOH . O 6 HOH A 185 585 150 HOH HOH . O 6 HOH A 186 586 90 HOH HOH . O 6 HOH A 187 587 189 HOH HOH . O 6 HOH A 188 588 183 HOH HOH . O 6 HOH A 189 589 132 HOH HOH . O 6 HOH A 190 590 131 HOH HOH . O 6 HOH A 191 591 173 HOH HOH . O 6 HOH A 192 592 184 HOH HOH . O 6 HOH A 193 593 153 HOH HOH . O 6 HOH A 194 594 143 HOH HOH . O 6 HOH A 195 595 179 HOH HOH . O 6 HOH A 196 596 87 HOH HOH . O 6 HOH A 197 597 134 HOH HOH . O 6 HOH A 198 598 123 HOH HOH . O 6 HOH A 199 599 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7GJ . . . B 2 35.252 -3.656 12.118 1 24.46 ? C4 7GJ 301 A 1 HETATM 2 C C5 7GJ . . . B 2 34.271 -4.529 11.673 1 23.13 ? C5 7GJ 301 A 1 HETATM 3 C C6 7GJ . . . B 2 33.133 -4.727 12.457 1 26.38 ? C6 7GJ 301 A 1 HETATM 4 C C8 7GJ . . . B 2 35.856 -4.513 10.175 1 24.68 ? C8 7GJ 301 A 1 HETATM 5 N N1 7GJ . . . B 2 33.028 -4.058 13.636 1 29.55 ? N1 7GJ 301 A 1 HETATM 6 N N2 7GJ . . . B 2 33.895 -2.497 15.27 1 29.27 ? N2 7GJ 301 A 1 HETATM 7 N N3 7GJ . . . B 2 35.052 -3.026 13.325 1 27.81 ? N3 7GJ 301 A 1 HETATM 8 C CAL 7GJ . . . B 2 30.172 -7.35 11.244 1 38.5 ? CAL 7GJ 301 A 1 HETATM 9 C CAJ 7GJ . . . B 2 29.13 -8.575 10.945 1 49.99 ? CAJ 7GJ 301 A 1 HETATM 10 C CAI 7GJ . . . B 2 27.649 -8.133 11.282 1 43.54 ? CAI 7GJ 301 A 1 HETATM 11 C CAK 7GJ . . . B 2 27.539 -7.788 12.771 1 51.91 ? CAK 7GJ 301 A 1 HETATM 12 C CAM 7GJ . . . B 2 28.663 -6.7 13.257 1 44.06 ? CAM 7GJ 301 A 1 HETATM 13 C CBB 7GJ . . . B 2 30.136 -6.931 12.715 1 44.41 ? CBB 7GJ 301 A 1 HETATM 14 C CAN 7GJ . . . B 2 30.91 -5.641 12.902 1 32.82 ? CAN 7GJ 301 A 1 HETATM 15 O O6 7GJ . . . B 2 32.113 -5.629 12.003 1 29.6 ? O6 7GJ 301 A 1 HETATM 16 N N7 7GJ . . . B 2 34.679 -5.038 10.468 1 22.78 ? N7 7GJ 301 A 1 HETATM 17 N N9 7GJ . . . B 2 36.214 -3.673 11.15 1 25.82 ? N9 7GJ 301 A 1 HETATM 18 C C2 7GJ . . . B 2 33.979 -3.218 14.039 1 29.28 ? C2 7GJ 301 A 1 HETATM 19 C CAV 7GJ . . . B 2 32.773 -2.428 16.176 1 29.66 ? CAV 7GJ 301 A 1 HETATM 20 C CAH 7GJ . . . B 2 31.578 -3.14 15.974 1 33.44 ? CAH 7GJ 301 A 1 HETATM 21 C CAE 7GJ . . . B 2 32.907 -1.611 17.306 1 34.22 ? CAE 7GJ 301 A 1 HETATM 22 C CAD 7GJ . . . B 2 31.858 -1.506 18.229 1 32.03 ? CAD 7GJ 301 A 1 HETATM 23 C CAF 7GJ . . . B 2 30.662 -2.205 18.019 1 34.78 ? CAF 7GJ 301 A 1 HETATM 24 C CAW 7GJ . . . B 2 30.519 -3.015 16.889 1 39.01 ? CAW 7GJ 301 A 1 HETATM 25 C CAU 7GJ . . . B 2 29.191 -3.793 16.705 1 35.78 ? CAU 7GJ 301 A 1 HETATM 26 O OAC 7GJ . . . B 2 28.852 -4.54 17.605 1 40.12 ? OAC 7GJ 301 A 1 HETATM 27 N NBC 7GJ . . . B 2 28.335 -3.68 15.532 1 35 ? NBC 7GJ 301 A 1 HETATM 28 C CAB 7GJ . . . B 2 27.114 -4.453 15.484 1 37.76 ? CAB 7GJ 301 A 1 HETATM 29 C CAA 7GJ . . . B 2 28.658 -2.807 14.423 1 36.59 ? CAA 7GJ 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #