data_5M54 # _model_server_result.job_id YMp8p7dylxGRs67GXuNzgw _model_server_result.datetime_utc '2024-11-05 00:30:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":502}' # _entry.id 5M54 # _exptl.entry_id 5M54 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 853.906 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TAXOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 F O2B GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 G MG MG . D MG 502 1_555 N O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 G MG MG . D MG 502 1_555 N O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc5 G MG MG . D MG 502 1_555 N O HOH . D HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 J O2G GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc7 J O3B GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc8 J O2B GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 K MG MG . A MG 502 1_555 O O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc10 K MG MG . A MG 502 1_555 O O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C47 H51 N O14' _chem_comp.formula_weight 853.906 _chem_comp.id TA1 _chem_comp.mon_nstd_flag . _chem_comp.name TAXOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C01 TA1 sing 385 n n O01 H011 TA1 sing 386 n n C01 C02 TA1 sing 387 n n C01 C43 TA1 sing 388 n n C01 C45 TA1 sing 389 n n C02 O02 TA1 sing 390 n n C02 C10 TA1 sing 391 n n C02 H021 TA1 sing 392 n n O02 C03 TA1 sing 393 n n C03 O03 TA1 doub 394 n n C03 C04 TA1 sing 395 n n C04 C05 TA1 doub 396 n y C04 C09 TA1 sing 397 n y C05 C06 TA1 sing 398 n y C05 H051 TA1 sing 399 n n C06 C07 TA1 doub 400 n y C06 H061 TA1 sing 401 n n C07 C08 TA1 sing 402 n y C07 HC71 TA1 sing 403 n n C08 C09 TA1 doub 404 n y C08 H081 TA1 sing 405 n n C09 H091 TA1 sing 406 n n C10 C11 TA1 sing 407 n n C10 C18 TA1 sing 408 n n C10 H101 TA1 sing 409 n n C11 O04 TA1 sing 410 n n C11 C14 TA1 sing 411 n n C11 C15 TA1 sing 412 n n O04 C12 TA1 sing 413 n n C12 O05 TA1 doub 414 n n C12 C13 TA1 sing 415 n n C13 H131 TA1 sing 416 n n C13 H132 TA1 sing 417 n n C13 H133 TA1 sing 418 n n C14 O06 TA1 sing 419 n n C14 H141 TA1 sing 420 n n C14 H142 TA1 sing 421 n n O06 C15 TA1 sing 422 n n C15 C16 TA1 sing 423 n n C15 H151 TA1 sing 424 n n C16 C17 TA1 sing 425 n n C16 H161 TA1 sing 426 n n C16 H162 TA1 sing 427 n n C17 O07 TA1 sing 428 n n C17 C18 TA1 sing 429 n n C17 H171 TA1 sing 430 n n O07 H071 TA1 sing 431 n n C18 C19 TA1 sing 432 n n C18 C20 TA1 sing 433 n n C19 H191 TA1 sing 434 n n C19 H192 TA1 sing 435 n n C19 H193 TA1 sing 436 n n C20 O08 TA1 doub 437 n n C20 C21 TA1 sing 438 n n C21 O09 TA1 sing 439 n n C21 C24 TA1 sing 440 n n C21 H211 TA1 sing 441 n n O09 C22 TA1 sing 442 n n C22 O10 TA1 doub 443 n n C22 C23 TA1 sing 444 n n C23 H231 TA1 sing 445 n n C23 H232 TA1 sing 446 n n C23 H233 TA1 sing 447 n n C24 C25 TA1 doub 448 n n C24 C45 TA1 sing 449 n n C25 C26 TA1 sing 450 n n C25 C44 TA1 sing 451 n n C26 O11 TA1 sing 452 n n C26 C43 TA1 sing 453 n n C26 H261 TA1 sing 454 n n O11 C27 TA1 sing 455 n n C27 O12 TA1 doub 456 n n C27 C28 TA1 sing 457 n n C28 O13 TA1 sing 458 n n C28 C29 TA1 sing 459 n n C28 H281 TA1 sing 460 n n O13 HO11 TA1 sing 461 n n C29 N01 TA1 sing 462 n n C29 C37 TA1 sing 463 n n C29 H291 TA1 sing 464 n n N01 C30 TA1 sing 465 n n N01 HN01 TA1 sing 466 n n C30 O14 TA1 doub 467 n n C30 C31 TA1 sing 468 n n C31 C32 TA1 doub 469 n y C31 C36 TA1 sing 470 n y C32 C33 TA1 sing 471 n y C32 H321 TA1 sing 472 n n C33 C34 TA1 doub 473 n y C33 H331 TA1 sing 474 n n C34 C35 TA1 sing 475 n y C34 H341 TA1 sing 476 n n C35 C36 TA1 doub 477 n y C35 H351 TA1 sing 478 n n C36 H361 TA1 sing 479 n n C37 C38 TA1 doub 480 n y C37 C42 TA1 sing 481 n y C38 C39 TA1 sing 482 n y C38 H381 TA1 sing 483 n n C39 C40 TA1 doub 484 n y C39 H391 TA1 sing 485 n n C40 C41 TA1 sing 486 n y C40 H401 TA1 sing 487 n n C41 C42 TA1 doub 488 n y C41 H411 TA1 sing 489 n n C42 H421 TA1 sing 490 n n C43 H431 TA1 sing 491 n n C43 H432 TA1 sing 492 n n C44 H441 TA1 sing 493 n n C44 H442 TA1 sing 494 n n C44 H443 TA1 sing 495 n n C45 C46 TA1 sing 496 n n C45 C47 TA1 sing 497 n n C46 H461 TA1 sing 498 n n C46 H462 TA1 sing 499 n n C46 H463 TA1 sing 500 n n C47 H471 TA1 sing 501 n n C47 H472 TA1 sing 502 n n C47 H473 TA1 sing 503 n n # _atom_sites.entry_id 5M54 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP D 1 501 501 GTP GTP . G 5 MG D 1 502 502 MG MG . H 6 GDP E 1 501 501 GDP GDP . I 7 TA1 E 1 502 502 TA1 TA1 . J 4 GTP A 1 501 501 GTP GTP . K 5 MG A 1 502 502 MG MG . L 6 GDP B 1 501 501 GDP GDP . M 7 TA1 B 1 502 502 TA1 TA1 . N 8 HOH D 1 601 602 HOH HOH . N 8 HOH D 2 602 601 HOH HOH . N 8 HOH D 3 603 603 HOH HOH . N 8 HOH D 4 604 604 HOH HOH . O 8 HOH A 1 601 602 HOH HOH . O 8 HOH A 2 602 601 HOH HOH . O 8 HOH A 3 603 603 HOH HOH . O 8 HOH A 4 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 TA1 . . . M 7 62.85 84.332 92.801 1 410.85 ? O01 TA1 502 B 1 HETATM 2 C C01 TA1 . . . M 7 62.996 83.677 91.533 1 410.85 ? C01 TA1 502 B 1 HETATM 3 C C02 TA1 . . . M 7 62.502 82.109 91.764 1 410.85 ? C02 TA1 502 B 1 HETATM 4 O O02 TA1 . . . M 7 61.27 82.308 92.491 1 410.85 ? O02 TA1 502 B 1 HETATM 5 C C03 TA1 . . . M 7 61.2 81.897 93.768 1 410.85 ? C03 TA1 502 B 1 HETATM 6 O O03 TA1 . . . M 7 62.14 81.461 94.382 1 410.85 ? O03 TA1 502 B 1 HETATM 7 C C04 TA1 . . . M 7 59.824 82.023 94.313 1 410.85 ? C04 TA1 502 B 1 HETATM 8 C C05 TA1 . . . M 7 58.792 82.517 93.52 1 410.85 ? C05 TA1 502 B 1 HETATM 9 C C06 TA1 . . . M 7 57.501 82.582 94.013 1 410.85 ? C06 TA1 502 B 1 HETATM 10 C C07 TA1 . . . M 7 57.225 82.162 95.297 1 410.85 ? C07 TA1 502 B 1 HETATM 11 C C08 TA1 . . . M 7 58.242 81.684 96.097 1 410.85 ? C08 TA1 502 B 1 HETATM 12 C C09 TA1 . . . M 7 59.536 81.614 95.612 1 410.85 ? C09 TA1 502 B 1 HETATM 13 C C10 TA1 . . . M 7 62.327 81.113 90.509 1 410.85 ? C10 TA1 502 B 1 HETATM 14 C C11 TA1 . . . M 7 60.834 80.461 90.335 1 410.85 ? C11 TA1 502 B 1 HETATM 15 O O04 TA1 . . . M 7 59.845 81.525 90.127 1 410.85 ? O04 TA1 502 B 1 HETATM 16 C C12 TA1 . . . M 7 59.742 82.274 88.995 1 410.85 ? C12 TA1 502 B 1 HETATM 17 O O05 TA1 . . . M 7 60.465 82.181 88.044 1 410.85 ? O05 TA1 502 B 1 HETATM 18 C C13 TA1 . . . M 7 58.603 83.224 89.125 1 410.85 ? C13 TA1 502 B 1 HETATM 19 C C14 TA1 . . . M 7 60.215 79.496 91.384 1 410.85 ? C14 TA1 502 B 1 HETATM 20 O O06 TA1 . . . M 7 59.715 78.642 90.355 1 410.85 ? O06 TA1 502 B 1 HETATM 21 C C15 TA1 . . . M 7 60.661 79.227 89.416 1 410.85 ? C15 TA1 502 B 1 HETATM 22 C C16 TA1 . . . M 7 61.857 78.349 89.159 1 410.85 ? C16 TA1 502 B 1 HETATM 23 C C17 TA1 . . . M 7 63.12 79.179 88.976 1 410.85 ? C17 TA1 502 B 1 HETATM 24 O O07 TA1 . . . M 7 64.2 78.305 88.637 1 410.85 ? O07 TA1 502 B 1 HETATM 25 C C18 TA1 . . . M 7 63.505 80.045 90.212 1 410.85 ? C18 TA1 502 B 1 HETATM 26 C C19 TA1 . . . M 7 63.867 79.166 91.418 1 410.85 ? C19 TA1 502 B 1 HETATM 27 C C20 TA1 . . . M 7 64.889 80.553 89.702 1 410.85 ? C20 TA1 502 B 1 HETATM 28 O O08 TA1 . . . M 7 65.76 79.717 89.655 1 410.85 ? O08 TA1 502 B 1 HETATM 29 C C21 TA1 . . . M 7 65.362 82.219 89.18 1 410.85 ? C21 TA1 502 B 1 HETATM 30 O O09 TA1 . . . M 7 66.81 82.253 89.324 1 410.85 ? O09 TA1 502 B 1 HETATM 31 C C22 TA1 . . . M 7 67.543 82.727 88.298 1 410.85 ? C22 TA1 502 B 1 HETATM 32 O O10 TA1 . . . M 7 67.063 83.115 87.275 1 410.85 ? O10 TA1 502 B 1 HETATM 33 C C23 TA1 . . . M 7 68.996 82.694 88.622 1 410.85 ? C23 TA1 502 B 1 HETATM 34 C C24 TA1 . . . M 7 64.658 83.535 89.613 1 410.85 ? C24 TA1 502 B 1 HETATM 35 C C25 TA1 . . . M 7 63.792 84.128 88.759 1 410.85 ? C25 TA1 502 B 1 HETATM 36 C C26 TA1 . . . M 7 62.652 84.984 89.292 1 410.85 ? C26 TA1 502 B 1 HETATM 37 O O11 TA1 . . . M 7 61.541 85.293 88.4 1 410.85 ? O11 TA1 502 B 1 HETATM 38 C C27 TA1 . . . M 7 61.471 86.558 87.955 1 410.85 ? C27 TA1 502 B 1 HETATM 39 O O12 TA1 . . . M 7 62.313 87.39 88.142 1 410.85 ? O12 TA1 502 B 1 HETATM 40 C C28 TA1 . . . M 7 60.171 86.826 87.204 1 410.85 ? C28 TA1 502 B 1 HETATM 41 O O13 TA1 . . . M 7 60.308 88.008 86.436 1 410.85 ? O13 TA1 502 B 1 HETATM 42 C C29 TA1 . . . M 7 59.016 86.964 88.209 1 410.85 ? C29 TA1 502 B 1 HETATM 43 N N01 TA1 . . . M 7 59.354 87.983 89.197 1 410.85 ? N01 TA1 502 B 1 HETATM 44 C C30 TA1 . . . M 7 59.559 87.666 90.483 1 410.85 ? C30 TA1 502 B 1 HETATM 45 O O14 TA1 . . . M 7 59.432 86.52 90.904 1 410.85 ? O14 TA1 502 B 1 HETATM 46 C C31 TA1 . . . M 7 59.966 88.78 91.392 1 410.85 ? C31 TA1 502 B 1 HETATM 47 C C32 TA1 . . . M 7 59.304 90.004 91.354 1 410.85 ? C32 TA1 502 B 1 HETATM 48 C C33 TA1 . . . M 7 59.667 91.024 92.217 1 410.85 ? C33 TA1 502 B 1 HETATM 49 C C34 TA1 . . . M 7 60.692 90.839 93.121 1 410.85 ? C34 TA1 502 B 1 HETATM 50 C C35 TA1 . . . M 7 61.36 89.632 93.163 1 410.85 ? C35 TA1 502 B 1 HETATM 51 C C36 TA1 . . . M 7 61.003 88.607 92.305 1 410.85 ? C36 TA1 502 B 1 HETATM 52 C C37 TA1 . . . M 7 57.662 87.201 87.57 1 410.85 ? C37 TA1 502 B 1 HETATM 53 C C38 TA1 . . . M 7 56.821 86.134 87.281 1 410.85 ? C38 TA1 502 B 1 HETATM 54 C C39 TA1 . . . M 7 55.585 86.348 86.697 1 410.85 ? C39 TA1 502 B 1 HETATM 55 C C40 TA1 . . . M 7 55.173 87.627 86.393 1 410.85 ? C40 TA1 502 B 1 HETATM 56 C C41 TA1 . . . M 7 55.996 88.695 86.674 1 410.85 ? C41 TA1 502 B 1 HETATM 57 C C42 TA1 . . . M 7 57.233 88.485 87.26 1 410.85 ? C42 TA1 502 B 1 HETATM 58 C C43 TA1 . . . M 7 62.047 84.419 90.574 1 410.85 ? C43 TA1 502 B 1 HETATM 59 C C44 TA1 . . . M 7 63.862 83.998 87.266 1 410.85 ? C44 TA1 502 B 1 HETATM 60 C C45 TA1 . . . M 7 64.579 83.782 91.164 1 410.85 ? C45 TA1 502 B 1 HETATM 61 C C46 TA1 . . . M 7 65.315 85.017 91.699 1 410.85 ? C46 TA1 502 B 1 HETATM 62 C C47 TA1 . . . M 7 65.315 82.888 92.169 1 410.85 ? C47 TA1 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 62 #