data_5M5A # _model_server_result.job_id wZsww4MWNU-KdvijAhUicg _model_server_result.datetime_utc '2024-10-10 17:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5M5A # _exptl.entry_id 5M5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.473 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description K-252A _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M5A _cell.length_a 63.282 _cell.length_b 91.206 _cell.length_c 59.649 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLN _struct_conn.ptnr1_label_seq_id 182 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLN _struct_conn.ptnr1_auth_seq_id 181 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 4_573 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.146 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H21 N3 O5' _chem_comp.formula_weight 467.473 _chem_comp.id KSA _chem_comp.mon_nstd_flag . _chem_comp.name K-252A _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C22 KSA doub 173 n n C22 O5 KSA sing 174 n n C22 C1 KSA sing 175 n n O5 C26 KSA sing 176 n n C26 H261 KSA sing 177 n n C26 H262 KSA sing 178 n n C26 H263 KSA sing 179 n n C1 O4 KSA sing 180 n n C1 C2 KSA sing 181 n n C1 C27 KSA sing 182 n n O4 HO4 KSA sing 183 n n C2 O1 KSA sing 184 n n C2 C25 KSA sing 185 n n C2 N1 KSA sing 186 n n O1 C24 KSA sing 187 n n C25 H251 KSA sing 188 n n C25 H252 KSA sing 189 n n C25 H253 KSA sing 190 n n N1 C3 KSA sing 191 n y N1 C10 KSA sing 192 n y C3 C4 KSA doub 193 n y C3 C8 KSA sing 194 n y C4 N2 KSA sing 195 n y C4 C5 KSA sing 196 n y N2 C24 KSA sing 197 n n N2 C17 KSA sing 198 n y C24 C27 KSA sing 199 n n C24 H24 KSA sing 200 n n C27 H271 KSA sing 201 n n C27 H272 KSA sing 202 n n C17 C18 KSA doub 203 n y C17 C16 KSA sing 204 n y C18 C19 KSA sing 205 n y C18 H18 KSA sing 206 n n C19 C20 KSA doub 207 n y C19 H19 KSA sing 208 n n C20 C21 KSA sing 209 n y C20 H20 KSA sing 210 n n C21 C16 KSA doub 211 n y C21 H21 KSA sing 212 n n C16 C5 KSA sing 213 n y C5 C6 KSA doub 214 n y C6 C15 KSA sing 215 n n C6 C7 KSA sing 216 n y C15 O2 KSA doub 217 n n C15 N3 KSA sing 218 n n C7 C23 KSA sing 219 n n C7 C8 KSA doub 220 n y C23 N3 KSA sing 221 n n C23 H231 KSA sing 222 n n C23 H232 KSA sing 223 n n N3 HN3 KSA sing 224 n n C8 C9 KSA sing 225 n y C9 C10 KSA doub 226 n y C9 C14 KSA sing 227 n y C10 C11 KSA sing 228 n y C11 C12 KSA doub 229 n y C11 H11 KSA sing 230 n n C14 C13 KSA doub 231 n y C14 H14 KSA sing 232 n n C13 C12 KSA sing 233 n y C13 H13 KSA sing 234 n n C12 H12 KSA sing 235 n n # _atom_sites.entry_id 5M5A _atom_sites.fract_transf_matrix[1][1] 0.015802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 144 NA NA . C 2 NA A 1 402 145 NA NA . D 3 CL A 1 403 148 CL CL . E 4 KSA A 1 404 1 KSA KSA . F 5 HOH A 1 501 98 HOH HOH . F 5 HOH A 2 502 109 HOH HOH . F 5 HOH A 3 503 47 HOH HOH . F 5 HOH A 4 504 90 HOH HOH . F 5 HOH A 5 505 141 HOH HOH . F 5 HOH A 6 506 20 HOH HOH . F 5 HOH A 7 507 89 HOH HOH . F 5 HOH A 8 508 114 HOH HOH . F 5 HOH A 9 509 26 HOH HOH . F 5 HOH A 10 510 106 HOH HOH . F 5 HOH A 11 511 132 HOH HOH . F 5 HOH A 12 512 101 HOH HOH . F 5 HOH A 13 513 102 HOH HOH . F 5 HOH A 14 514 54 HOH HOH . F 5 HOH A 15 515 95 HOH HOH . F 5 HOH A 16 516 22 HOH HOH . F 5 HOH A 17 517 113 HOH HOH . F 5 HOH A 18 518 116 HOH HOH . F 5 HOH A 19 519 96 HOH HOH . F 5 HOH A 20 520 110 HOH HOH . F 5 HOH A 21 521 60 HOH HOH . F 5 HOH A 22 522 79 HOH HOH . F 5 HOH A 23 523 74 HOH HOH . F 5 HOH A 24 524 18 HOH HOH . F 5 HOH A 25 525 48 HOH HOH . F 5 HOH A 26 526 123 HOH HOH . F 5 HOH A 27 527 77 HOH HOH . F 5 HOH A 28 528 126 HOH HOH . F 5 HOH A 29 529 1 HOH HOH . F 5 HOH A 30 530 2 HOH HOH . F 5 HOH A 31 531 10 HOH HOH . F 5 HOH A 32 532 142 HOH HOH . F 5 HOH A 33 533 62 HOH HOH . F 5 HOH A 34 534 137 HOH HOH . F 5 HOH A 35 535 37 HOH HOH . F 5 HOH A 36 536 86 HOH HOH . F 5 HOH A 37 537 23 HOH HOH . F 5 HOH A 38 538 32 HOH HOH . F 5 HOH A 39 539 13 HOH HOH . F 5 HOH A 40 540 112 HOH HOH . F 5 HOH A 41 541 59 HOH HOH . F 5 HOH A 42 542 88 HOH HOH . F 5 HOH A 43 543 71 HOH HOH . F 5 HOH A 44 544 19 HOH HOH . F 5 HOH A 45 545 12 HOH HOH . F 5 HOH A 46 546 29 HOH HOH . F 5 HOH A 47 547 61 HOH HOH . F 5 HOH A 48 548 24 HOH HOH . F 5 HOH A 49 549 6 HOH HOH . F 5 HOH A 50 550 85 HOH HOH . F 5 HOH A 51 551 80 HOH HOH . F 5 HOH A 52 552 68 HOH HOH . F 5 HOH A 53 553 67 HOH HOH . F 5 HOH A 54 554 66 HOH HOH . F 5 HOH A 55 555 35 HOH HOH . F 5 HOH A 56 556 63 HOH HOH . F 5 HOH A 57 557 118 HOH HOH . F 5 HOH A 58 558 82 HOH HOH . F 5 HOH A 59 559 50 HOH HOH . F 5 HOH A 60 560 9 HOH HOH . F 5 HOH A 61 561 41 HOH HOH . F 5 HOH A 62 562 136 HOH HOH . F 5 HOH A 63 563 94 HOH HOH . F 5 HOH A 64 564 43 HOH HOH . F 5 HOH A 65 565 31 HOH HOH . F 5 HOH A 66 566 93 HOH HOH . F 5 HOH A 67 567 100 HOH HOH . F 5 HOH A 68 568 99 HOH HOH . F 5 HOH A 69 569 92 HOH HOH . F 5 HOH A 70 570 64 HOH HOH . F 5 HOH A 71 571 16 HOH HOH . F 5 HOH A 72 572 128 HOH HOH . F 5 HOH A 73 573 120 HOH HOH . F 5 HOH A 74 574 2 HOH HOH . F 5 HOH A 75 575 17 HOH HOH . F 5 HOH A 76 576 39 HOH HOH . F 5 HOH A 77 577 138 HOH HOH . F 5 HOH A 78 578 33 HOH HOH . F 5 HOH A 79 579 21 HOH HOH . F 5 HOH A 80 580 115 HOH HOH . F 5 HOH A 81 581 28 HOH HOH . F 5 HOH A 82 582 4 HOH HOH . F 5 HOH A 83 583 73 HOH HOH . F 5 HOH A 84 584 107 HOH HOH . F 5 HOH A 85 585 58 HOH HOH . F 5 HOH A 86 586 30 HOH HOH . F 5 HOH A 87 587 11 HOH HOH . F 5 HOH A 88 588 87 HOH HOH . F 5 HOH A 89 589 15 HOH HOH . F 5 HOH A 90 590 72 HOH HOH . F 5 HOH A 91 591 78 HOH HOH . F 5 HOH A 92 592 3 HOH HOH . F 5 HOH A 93 593 1 HOH HOH . F 5 HOH A 94 594 46 HOH HOH . F 5 HOH A 95 595 130 HOH HOH . F 5 HOH A 96 596 139 HOH HOH . F 5 HOH A 97 597 122 HOH HOH . F 5 HOH A 98 598 91 HOH HOH . F 5 HOH A 99 599 140 HOH HOH . F 5 HOH A 100 600 134 HOH HOH . F 5 HOH A 101 601 127 HOH HOH . F 5 HOH A 102 602 45 HOH HOH . F 5 HOH A 103 603 53 HOH HOH . F 5 HOH A 104 604 104 HOH HOH . F 5 HOH A 105 605 111 HOH HOH . F 5 HOH A 106 606 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 KSA . . . E 4 13.191 99.661 -48.86 1 48.95 ? O3 KSA 404 A 1 HETATM 2 C C22 KSA . . . E 4 12.846 98.565 -48.482 1 46.23 ? C22 KSA 404 A 1 HETATM 3 O O5 KSA . . . E 4 13.675 97.409 -48.755 1 52.79 ? O5 KSA 404 A 1 HETATM 4 C C26 KSA . . . E 4 15.084 97.448 -48.564 1 59.06 ? C26 KSA 404 A 1 HETATM 5 C C1 KSA . . . E 4 11.584 98.406 -47.669 1 40.34 ? C1 KSA 404 A 1 HETATM 6 O O4 KSA . . . E 4 10.704 99.531 -47.864 1 41.42 ? O4 KSA 404 A 1 HETATM 7 C C2 KSA . . . E 4 11.884 98.337 -46.208 1 36.82 ? C2 KSA 404 A 1 HETATM 8 O O1 KSA . . . E 4 12.34 97.018 -45.926 1 35.98 ? O1 KSA 404 A 1 HETATM 9 C C25 KSA . . . E 4 13.081 99.171 -45.725 1 37.47 ? C25 KSA 404 A 1 HETATM 10 N N1 KSA . . . E 4 10.637 98.539 -45.365 1 34.21 ? N1 KSA 404 A 1 HETATM 11 C C3 KSA . . . E 4 9.771 97.541 -45.027 1 32.37 ? C3 KSA 404 A 1 HETATM 12 C C4 KSA . . . E 4 9.755 96.092 -45.347 1 33.42 ? C4 KSA 404 A 1 HETATM 13 N N2 KSA . . . E 4 10.624 95.433 -46.09 1 36.62 ? N2 KSA 404 A 1 HETATM 14 C C24 KSA . . . E 4 11.718 96.112 -46.77 1 36.03 ? C24 KSA 404 A 1 HETATM 15 C C27 KSA . . . E 4 11.046 96.985 -47.882 1 39.81 ? C27 KSA 404 A 1 HETATM 16 C C17 KSA . . . E 4 10.255 94.125 -46.235 1 37.07 ? C17 KSA 404 A 1 HETATM 17 C C18 KSA . . . E 4 10.825 93.018 -46.863 1 38.11 ? C18 KSA 404 A 1 HETATM 18 C C19 KSA . . . E 4 10.183 91.78 -46.74 1 37.42 ? C19 KSA 404 A 1 HETATM 19 C C20 KSA . . . E 4 8.992 91.612 -46.016 1 36.63 ? C20 KSA 404 A 1 HETATM 20 C C21 KSA . . . E 4 8.378 92.674 -45.362 1 34.28 ? C21 KSA 404 A 1 HETATM 21 C C16 KSA . . . E 4 9.013 93.91 -45.462 1 33.5 ? C16 KSA 404 A 1 HETATM 22 C C5 KSA . . . E 4 8.707 95.21 -44.885 1 32.83 ? C5 KSA 404 A 1 HETATM 23 C C6 KSA . . . E 4 7.661 95.82 -44.051 1 31.67 ? C6 KSA 404 A 1 HETATM 24 C C15 KSA . . . E 4 6.478 95.208 -43.417 1 31.81 ? C15 KSA 404 A 1 HETATM 25 O O2 KSA . . . E 4 6.083 93.974 -43.528 1 33.21 ? O2 KSA 404 A 1 HETATM 26 C C7 KSA . . . E 4 7.609 97.238 -43.702 1 30.67 ? C7 KSA 404 A 1 HETATM 27 C C23 KSA . . . E 4 6.454 97.518 -42.892 1 31.42 ? C23 KSA 404 A 1 HETATM 28 N N3 KSA . . . E 4 5.782 96.186 -42.806 1 33.54 ? N3 KSA 404 A 1 HETATM 29 C C8 KSA . . . E 4 8.694 98.106 -44.21 1 31.87 ? C8 KSA 404 A 1 HETATM 30 C C9 KSA . . . E 4 9.021 99.512 -44.099 1 29.69 ? C9 KSA 404 A 1 HETATM 31 C C10 KSA . . . E 4 10.262 99.767 -44.867 1 35.12 ? C10 KSA 404 A 1 HETATM 32 C C11 KSA . . . E 4 10.727 101.09 -44.891 1 36.96 ? C11 KSA 404 A 1 HETATM 33 C C14 KSA . . . E 4 8.325 100.474 -43.44 1 30.87 ? C14 KSA 404 A 1 HETATM 34 C C13 KSA . . . E 4 8.839 101.761 -43.478 1 33.88 ? C13 KSA 404 A 1 HETATM 35 C C12 KSA . . . E 4 9.989 102.066 -44.202 1 33.69 ? C12 KSA 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #