data_5M5C
#
_model_server_result.job_id            2F8VYFVHlW_WAAIDCgbDcQ 
_model_server_result.datetime_utc      '2024-11-23 04:08:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    5M5C 
#
_exptl.entry_id    5M5C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2G GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc2 F O3B GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc3 F O2B GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc4 G MG MG . D MG 502 1_555 N O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc5 G MG MG . D MG 502 1_555 N O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc6 G MG MG . D MG 502 1_555 N O HOH . D HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc7 D OG1 THR 144 A THR 145 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc8 J O1G GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc9 J O2G GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc10 J O3B GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc11 J O2B GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc12 K MG MG . A MG 502 1_555 O O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc13 K MG MG . A MG 502 1_555 O O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     5M5C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP D 1 501 501 GTP GTP . 
G 5 MG D 1 502 502 MG MG . 
H 6 GDP E 1 501 501 GDP GDP . 
I 7 TA1 E 1 502 502 TA1 TA1 . 
J 4 GTP A 1 501 501 GTP GTP . 
K 5 MG A 1 502 502 MG MG . 
L 6 GDP B 1 501 501 GDP GDP . 
M 7 TA1 B 1 502 502 TA1 TA1 . 
N 8 HOH D 1 601 603 HOH HOH . 
N 8 HOH D 2 602 601 HOH HOH . 
N 8 HOH D 3 603 602 HOH HOH . 
N 8 HOH D 4 604 604 HOH HOH . 
O 8 HOH A 1 601 604 HOH HOH . 
O 8 HOH A 2 602 601 HOH HOH . 
O 8 HOH A 3 603 603 HOH HOH . 
O 8 HOH A 4 604 602 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . F 4 74.9 53.708 71.533 1 289.5 ? PG GTP 501 D 1 
HETATM 2 O O1G GTP . . . F 4 73.435 53.934 71.876 1 289.5 ? O1G GTP 501 D 1 
HETATM 3 O O2G GTP . . . F 4 75.792 54.72 72.131 1 289.5 ? O2G GTP 501 D 1 
HETATM 4 O O3G GTP . . . F 4 75.283 52.28 71.907 1 289.5 ? O3G GTP 501 D 1 
HETATM 5 O O3B GTP . . . F 4 75.007 53.791 69.949 1 289.5 ? O3B GTP 501 D 1 
HETATM 6 P PB GTP . . . F 4 76.066 53.197 68.921 1 289.5 ? PB GTP 501 D 1 
HETATM 7 O O1B GTP . . . F 4 75.327 52.672 67.706 1 289.5 ? O1B GTP 501 D 1 
HETATM 8 O O2B GTP . . . F 4 77.055 54.219 68.54 1 289.5 ? O2B GTP 501 D 1 
HETATM 9 O O3A GTP . . . F 4 76.83 51.993 69.621 1 289.5 ? O3A GTP 501 D 1 
HETATM 10 P PA GTP . . . F 4 78.403 51.782 69.716 1 289.5 ? PA GTP 501 D 1 
HETATM 11 O O1A GTP . . . F 4 79.043 52.899 68.899 1 289.5 ? O1A GTP 501 D 1 
HETATM 12 O O2A GTP . . . F 4 78.818 51.911 71.126 1 289.5 ? O2A GTP 501 D 1 
HETATM 13 O O5' GTP . . . F 4 78.792 50.401 69.042 1 289.5 ? O5' GTP 501 D 1 
HETATM 14 C C5' GTP . . . F 4 79.906 49.601 69.48 1 289.5 ? C5' GTP 501 D 1 
HETATM 15 C C4' GTP . . . F 4 80.593 49.014 68.275 1 289.5 ? C4' GTP 501 D 1 
HETATM 16 O O4' GTP . . . F 4 81.13 50.077 67.454 1 289.5 ? O4' GTP 501 D 1 
HETATM 17 C C3' GTP . . . F 4 81.767 48.089 68.597 1 289.5 ? C3' GTP 501 D 1 
HETATM 18 O O3' GTP . . . F 4 81.784 46.96 67.732 1 289.5 ? O3' GTP 501 D 1 
HETATM 19 C C2' GTP . . . F 4 82.978 48.996 68.384 1 289.5 ? C2' GTP 501 D 1 
HETATM 20 O O2' GTP . . . F 4 84.146 48.268 68.026 1 289.5 ? O2' GTP 501 D 1 
HETATM 21 C C1' GTP . . . F 4 82.499 49.831 67.208 1 289.5 ? C1' GTP 501 D 1 
HETATM 22 N N9 GTP . . . F 4 83.189 51.119 67.069 1 289.5 ? N9 GTP 501 D 1 
HETATM 23 C C8 GTP . . . F 4 83.023 52.246 67.827 1 289.5 ? C8 GTP 501 D 1 
HETATM 24 N N7 GTP . . . F 4 83.722 53.268 67.392 1 289.5 ? N7 GTP 501 D 1 
HETATM 25 C C5 GTP . . . F 4 84.394 52.776 66.285 1 289.5 ? C5 GTP 501 D 1 
HETATM 26 C C6 GTP . . . F 4 85.301 53.404 65.376 1 289.5 ? C6 GTP 501 D 1 
HETATM 27 O O6 GTP . . . F 4 85.643 54.583 65.361 1 289.5 ? O6 GTP 501 D 1 
HETATM 28 N N1 GTP . . . F 4 85.773 52.53 64.42 1 289.5 ? N1 GTP 501 D 1 
HETATM 29 C C2 GTP . . . F 4 85.421 51.214 64.317 1 289.5 ? C2 GTP 501 D 1 
HETATM 30 N N2 GTP . . . F 4 85.993 50.508 63.342 1 289.5 ? N2 GTP 501 D 1 
HETATM 31 N N3 GTP . . . F 4 84.558 50.621 65.139 1 289.5 ? N3 GTP 501 D 1 
HETATM 32 C C4 GTP . . . F 4 84.087 51.45 66.087 1 289.5 ? C4 GTP 501 D 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#