data_5M5C
#
_model_server_result.job_id            98VOWuqCPbt5pgtzkvrMMA 
_model_server_result.datetime_utc      '2024-10-28 02:42:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m5c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":502}' 
#
_entry.id    5M5C 
#
_exptl.entry_id    5M5C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              853.906 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TAXOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2G GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc2 F O3B GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc3 F O2B GTP . D GTP 501 1_555 G MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc4 G MG MG . D MG 502 1_555 N O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc5 G MG MG . D MG 502 1_555 N O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc6 G MG MG . D MG 502 1_555 N O HOH . D HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc7 D OG1 THR 144 A THR 145 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc8 J O1G GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc9 J O2G GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc10 J O3B GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc11 J O2B GTP . A GTP 501 1_555 K MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc12 K MG MG . A MG 502 1_555 O O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc13 K MG MG . A MG 502 1_555 O O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C47 H51 N O14' 
_chem_comp.formula_weight    853.906 
_chem_comp.id                TA1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TAXOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 TA1 sing 385 n n 
O01 H011 TA1 sing 386 n n 
C01 C02 TA1 sing 387 n n 
C01 C43 TA1 sing 388 n n 
C01 C45 TA1 sing 389 n n 
C02 O02 TA1 sing 390 n n 
C02 C10 TA1 sing 391 n n 
C02 H021 TA1 sing 392 n n 
O02 C03 TA1 sing 393 n n 
C03 O03 TA1 doub 394 n n 
C03 C04 TA1 sing 395 n n 
C04 C05 TA1 doub 396 n y 
C04 C09 TA1 sing 397 n y 
C05 C06 TA1 sing 398 n y 
C05 H051 TA1 sing 399 n n 
C06 C07 TA1 doub 400 n y 
C06 H061 TA1 sing 401 n n 
C07 C08 TA1 sing 402 n y 
C07 HC71 TA1 sing 403 n n 
C08 C09 TA1 doub 404 n y 
C08 H081 TA1 sing 405 n n 
C09 H091 TA1 sing 406 n n 
C10 C11 TA1 sing 407 n n 
C10 C18 TA1 sing 408 n n 
C10 H101 TA1 sing 409 n n 
C11 O04 TA1 sing 410 n n 
C11 C14 TA1 sing 411 n n 
C11 C15 TA1 sing 412 n n 
O04 C12 TA1 sing 413 n n 
C12 O05 TA1 doub 414 n n 
C12 C13 TA1 sing 415 n n 
C13 H131 TA1 sing 416 n n 
C13 H132 TA1 sing 417 n n 
C13 H133 TA1 sing 418 n n 
C14 O06 TA1 sing 419 n n 
C14 H141 TA1 sing 420 n n 
C14 H142 TA1 sing 421 n n 
O06 C15 TA1 sing 422 n n 
C15 C16 TA1 sing 423 n n 
C15 H151 TA1 sing 424 n n 
C16 C17 TA1 sing 425 n n 
C16 H161 TA1 sing 426 n n 
C16 H162 TA1 sing 427 n n 
C17 O07 TA1 sing 428 n n 
C17 C18 TA1 sing 429 n n 
C17 H171 TA1 sing 430 n n 
O07 H071 TA1 sing 431 n n 
C18 C19 TA1 sing 432 n n 
C18 C20 TA1 sing 433 n n 
C19 H191 TA1 sing 434 n n 
C19 H192 TA1 sing 435 n n 
C19 H193 TA1 sing 436 n n 
C20 O08 TA1 doub 437 n n 
C20 C21 TA1 sing 438 n n 
C21 O09 TA1 sing 439 n n 
C21 C24 TA1 sing 440 n n 
C21 H211 TA1 sing 441 n n 
O09 C22 TA1 sing 442 n n 
C22 O10 TA1 doub 443 n n 
C22 C23 TA1 sing 444 n n 
C23 H231 TA1 sing 445 n n 
C23 H232 TA1 sing 446 n n 
C23 H233 TA1 sing 447 n n 
C24 C25 TA1 doub 448 n n 
C24 C45 TA1 sing 449 n n 
C25 C26 TA1 sing 450 n n 
C25 C44 TA1 sing 451 n n 
C26 O11 TA1 sing 452 n n 
C26 C43 TA1 sing 453 n n 
C26 H261 TA1 sing 454 n n 
O11 C27 TA1 sing 455 n n 
C27 O12 TA1 doub 456 n n 
C27 C28 TA1 sing 457 n n 
C28 O13 TA1 sing 458 n n 
C28 C29 TA1 sing 459 n n 
C28 H281 TA1 sing 460 n n 
O13 HO11 TA1 sing 461 n n 
C29 N01 TA1 sing 462 n n 
C29 C37 TA1 sing 463 n n 
C29 H291 TA1 sing 464 n n 
N01 C30 TA1 sing 465 n n 
N01 HN01 TA1 sing 466 n n 
C30 O14 TA1 doub 467 n n 
C30 C31 TA1 sing 468 n n 
C31 C32 TA1 doub 469 n y 
C31 C36 TA1 sing 470 n y 
C32 C33 TA1 sing 471 n y 
C32 H321 TA1 sing 472 n n 
C33 C34 TA1 doub 473 n y 
C33 H331 TA1 sing 474 n n 
C34 C35 TA1 sing 475 n y 
C34 H341 TA1 sing 476 n n 
C35 C36 TA1 doub 477 n y 
C35 H351 TA1 sing 478 n n 
C36 H361 TA1 sing 479 n n 
C37 C38 TA1 doub 480 n y 
C37 C42 TA1 sing 481 n y 
C38 C39 TA1 sing 482 n y 
C38 H381 TA1 sing 483 n n 
C39 C40 TA1 doub 484 n y 
C39 H391 TA1 sing 485 n n 
C40 C41 TA1 sing 486 n y 
C40 H401 TA1 sing 487 n n 
C41 C42 TA1 doub 488 n y 
C41 H411 TA1 sing 489 n n 
C42 H421 TA1 sing 490 n n 
C43 H431 TA1 sing 491 n n 
C43 H432 TA1 sing 492 n n 
C44 H441 TA1 sing 493 n n 
C44 H442 TA1 sing 494 n n 
C44 H443 TA1 sing 495 n n 
C45 C46 TA1 sing 496 n n 
C45 C47 TA1 sing 497 n n 
C46 H461 TA1 sing 498 n n 
C46 H462 TA1 sing 499 n n 
C46 H463 TA1 sing 500 n n 
C47 H471 TA1 sing 501 n n 
C47 H472 TA1 sing 502 n n 
C47 H473 TA1 sing 503 n n 
#
_atom_sites.entry_id                     5M5C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP D 1 501 501 GTP GTP . 
G 5 MG D 1 502 502 MG MG . 
H 6 GDP E 1 501 501 GDP GDP . 
I 7 TA1 E 1 502 502 TA1 TA1 . 
J 4 GTP A 1 501 501 GTP GTP . 
K 5 MG A 1 502 502 MG MG . 
L 6 GDP B 1 501 501 GDP GDP . 
M 7 TA1 B 1 502 502 TA1 TA1 . 
N 8 HOH D 1 601 603 HOH HOH . 
N 8 HOH D 2 602 601 HOH HOH . 
N 8 HOH D 3 603 602 HOH HOH . 
N 8 HOH D 4 604 604 HOH HOH . 
O 8 HOH A 1 601 604 HOH HOH . 
O 8 HOH A 2 602 601 HOH HOH . 
O 8 HOH A 3 603 603 HOH HOH . 
O 8 HOH A 4 604 602 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 TA1 . . . M 7 71.518 93.338 106.307 1 213.68 ? O01 TA1 502 B 1 
HETATM 2 C C01 TA1 . . . M 7 71.762 92.862 104.978 1 213.68 ? C01 TA1 502 B 1 
HETATM 3 C C02 TA1 . . . M 7 71.224 91.308 104.933 1 213.68 ? C02 TA1 502 B 1 
HETATM 4 O O02 TA1 . . . M 7 69.954 91.455 105.605 1 213.68 ? O02 TA1 502 B 1 
HETATM 5 C C03 TA1 . . . M 7 69.761 90.834 106.779 1 213.68 ? C03 TA1 502 B 1 
HETATM 6 O O03 TA1 . . . M 7 70.61 90.195 107.345 1 213.68 ? O03 TA1 502 B 1 
HETATM 7 C C04 TA1 . . . M 7 68.377 91.028 107.281 1 213.68 ? C04 TA1 502 B 1 
HETATM 8 C C05 TA1 . . . M 7 67.462 91.777 106.548 1 213.68 ? C05 TA1 502 B 1 
HETATM 9 C C06 TA1 . . . M 7 66.171 91.957 107.014 1 213.68 ? C06 TA1 502 B 1 
HETATM 10 C C07 TA1 . . . M 7 65.779 91.393 108.21 1 213.68 ? C07 TA1 502 B 1 
HETATM 11 C C08 TA1 . . . M 7 66.678 90.649 108.945 1 213.68 ? C08 TA1 502 B 1 
HETATM 12 C C09 TA1 . . . M 7 67.971 90.465 108.486 1 213.68 ? C09 TA1 502 B 1 
HETATM 13 C C10 TA1 . . . M 7 71.086 90.555 103.53 1 213.68 ? C10 TA1 502 B 1 
HETATM 14 C C11 TA1 . . . M 7 69.616 89.908 103.212 1 213.68 ? C11 TA1 502 B 1 
HETATM 15 O O04 TA1 . . . M 7 68.589 90.95 103.191 1 213.68 ? O04 TA1 502 B 1 
HETATM 16 C C12 TA1 . . . M 7 68.465 91.897 102.226 1 213.68 ? C12 TA1 502 B 1 
HETATM 17 O O05 TA1 . . . M 7 69.21 92.033 101.298 1 213.68 ? O05 TA1 502 B 1 
HETATM 18 C C13 TA1 . . . M 7 67.26 92.73 102.498 1 213.68 ? C13 TA1 502 B 1 
HETATM 19 C C14 TA1 . . . M 7 68.998 88.778 104.064 1 213.68 ? C14 TA1 502 B 1 
HETATM 20 O O06 TA1 . . . M 7 68.628 88.032 102.897 1 213.68 ? O06 TA1 502 B 1 
HETATM 21 C C15 TA1 . . . M 7 69.492 88.87 102.078 1 213.68 ? C15 TA1 502 B 1 
HETATM 22 C C16 TA1 . . . M 7 70.742 88.169 101.611 1 213.68 ? C16 TA1 502 B 1 
HETATM 23 C C17 TA1 . . . M 7 71.975 89.058 101.675 1 213.68 ? C17 TA1 502 B 1 
HETATM 24 O O07 TA1 . . . M 7 73.093 88.327 101.167 1 213.68 ? O07 TA1 502 B 1 
HETATM 25 C C18 TA1 . . . M 7 72.295 89.593 103.094 1 213.68 ? C18 TA1 502 B 1 
HETATM 26 C C19 TA1 . . . M 7 72.608 88.458 104.082 1 213.68 ? C19 TA1 502 B 1 
HETATM 27 C C20 TA1 . . . M 7 73.712 90.166 102.806 1 213.68 ? C20 TA1 502 B 1 
HETATM 28 O O08 TA1 . . . M 7 74.571 89.331 102.654 1 213.68 ? O08 TA1 502 B 1 
HETATM 29 C C21 TA1 . . . M 7 74.289 91.711 102.653 1 213.68 ? C21 TA1 502 B 1 
HETATM 30 O O09 TA1 . . . M 7 75.697 91.628 103.019 1 213.68 ? O09 TA1 502 B 1 
HETATM 31 C C22 TA1 . . . M 7 76.567 92.438 102.384 1 213.68 ? C22 TA1 502 B 1 
HETATM 32 O O10 TA1 . . . M 7 76.241 93.206 101.527 1 213.68 ? O10 TA1 502 B 1 
HETATM 33 C C23 TA1 . . . M 7 77.952 92.238 102.892 1 213.68 ? C23 TA1 502 B 1 
HETATM 34 C C24 TA1 . . . M 7 73.563 92.936 103.215 1 213.68 ? C24 TA1 502 B 1 
HETATM 35 C C25 TA1 . . . M 7 72.793 93.656 102.373 1 213.68 ? C25 TA1 502 B 1 
HETATM 36 C C26 TA1 . . . M 7 71.589 94.416 102.878 1 213.68 ? C26 TA1 502 B 1 
HETATM 37 O O11 TA1 . . . M 7 70.572 94.654 101.867 1 213.68 ? O11 TA1 502 B 1 
HETATM 38 C C27 TA1 . . . M 7 70.358 95.928 101.511 1 213.68 ? C27 TA1 502 B 1 
HETATM 39 O O12 TA1 . . . M 7 70.985 96.863 101.922 1 213.68 ? O12 TA1 502 B 1 
HETATM 40 C C28 TA1 . . . M 7 69.205 96.049 100.54 1 213.68 ? C28 TA1 502 B 1 
HETATM 41 O O13 TA1 . . . M 7 69.456 97.134 99.666 1 213.68 ? O13 TA1 502 B 1 
HETATM 42 C C29 TA1 . . . M 7 67.936 96.26 101.361 1 213.68 ? C29 TA1 502 B 1 
HETATM 43 N N01 TA1 . . . M 7 68.189 97.336 102.306 1 213.68 ? N01 TA1 502 B 1 
HETATM 44 C C30 TA1 . . . M 7 68.073 97.137 103.624 1 213.68 ? C30 TA1 502 B 1 
HETATM 45 O O14 TA1 . . . M 7 67.572 96.118 104.091 1 213.68 ? O14 TA1 502 B 1 
HETATM 46 C C31 TA1 . . . M 7 68.622 98.203 104.514 1 213.68 ? C31 TA1 502 B 1 
HETATM 47 C C32 TA1 . . . M 7 68.19 99.521 104.411 1 213.68 ? C32 TA1 502 B 1 
HETATM 48 C C33 TA1 . . . M 7 68.71 100.495 105.246 1 213.68 ? C33 TA1 502 B 1 
HETATM 49 C C34 TA1 . . . M 7 69.662 100.168 106.188 1 213.68 ? C34 TA1 502 B 1 
HETATM 50 C C35 TA1 . . . M 7 70.098 98.864 106.297 1 213.68 ? C35 TA1 502 B 1 
HETATM 51 C C36 TA1 . . . M 7 69.584 97.884 105.466 1 213.68 ? C36 TA1 502 B 1 
HETATM 52 C C37 TA1 . . . M 7 66.666 96.448 100.556 1 213.68 ? C37 TA1 502 B 1 
HETATM 53 C C38 TA1 . . . M 7 65.796 95.385 100.355 1 213.68 ? C38 TA1 502 B 1 
HETATM 54 C C39 TA1 . . . M 7 64.641 95.549 99.61 1 213.68 ? C39 TA1 502 B 1 
HETATM 55 C C40 TA1 . . . M 7 64.341 96.775 99.056 1 213.68 ? C40 TA1 502 B 1 
HETATM 56 C C41 TA1 . . . M 7 65.194 97.839 99.251 1 213.68 ? C41 TA1 502 B 1 
HETATM 57 C C42 TA1 . . . M 7 66.349 97.679 99.997 1 213.68 ? C42 TA1 502 B 1 
HETATM 58 C C43 TA1 . . . M 7 70.9 93.738 104.051 1 213.68 ? C43 TA1 502 B 1 
HETATM 59 C C44 TA1 . . . M 7 73.041 93.75 100.897 1 213.68 ? C44 TA1 502 B 1 
HETATM 60 C C45 TA1 . . . M 7 73.343 92.964 104.774 1 213.68 ? C45 TA1 502 B 1 
HETATM 61 C C46 TA1 . . . M 7 74.028 94.131 105.502 1 213.68 ? C46 TA1 502 B 1 
HETATM 62 C C47 TA1 . . . M 7 73.96 91.947 105.743 1 213.68 ? C47 TA1 502 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           62 
#