data_5M5J
#
_model_server_result.job_id            U1GkC40jus9-bz2n2ulGSw 
_model_server_result.datetime_utc      '2024-11-09 01:28:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    5M5J 
#
_exptl.entry_id    5M5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M5J 
_cell.length_a            85.643 
_cell.length_b            85.643 
_cell.length_c            163.221 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 148 A CYS 137 1_555 A SG CYS 151 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 B SG CYS 148 B CYS 137 1_555 B SG CYS 151 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 B OE2 GLU 93 B GLU 82 1_555 E NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc2 B OE2 GLU 114 B GLU 103 1_555 E NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5M5J 
_atom_sites.fract_transf_matrix[1][1]    0.011676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1001 1001 FAD FAD . 
D 2 FAD B 1 1001 1001 FAD FAD . 
E 3 NA B 1 1002 1 NA NA . 
F 4 HOH A 1 1101 11 HOH HOH . 
F 4 HOH A 2 1102 15 HOH HOH . 
F 4 HOH A 3 1103 25 HOH HOH . 
F 4 HOH A 4 1104 27 HOH HOH . 
F 4 HOH A 5 1105 14 HOH HOH . 
F 4 HOH A 6 1106 6 HOH HOH . 
F 4 HOH A 7 1107 17 HOH HOH . 
F 4 HOH A 8 1108 32 HOH HOH . 
F 4 HOH A 9 1109 8 HOH HOH . 
F 4 HOH A 10 1110 18 HOH HOH . 
F 4 HOH A 11 1111 13 HOH HOH . 
F 4 HOH A 12 1112 5 HOH HOH . 
F 4 HOH A 13 1113 34 HOH HOH . 
F 4 HOH A 14 1114 19 HOH HOH . 
F 4 HOH A 15 1115 7 HOH HOH . 
F 4 HOH A 16 1116 9 HOH HOH . 
F 4 HOH A 17 1117 26 HOH HOH . 
F 4 HOH A 18 1118 16 HOH HOH . 
F 4 HOH A 19 1119 21 HOH HOH . 
F 4 HOH A 20 1120 23 HOH HOH . 
G 4 HOH B 1 1101 22 HOH HOH . 
G 4 HOH B 2 1102 38 HOH HOH . 
G 4 HOH B 3 1103 1 HOH HOH . 
G 4 HOH B 4 1104 39 HOH HOH . 
G 4 HOH B 5 1105 10 HOH HOH . 
G 4 HOH B 6 1106 3 HOH HOH . 
G 4 HOH B 7 1107 2 HOH HOH . 
G 4 HOH B 8 1108 40 HOH HOH . 
G 4 HOH B 9 1109 35 HOH HOH . 
G 4 HOH B 10 1110 4 HOH HOH . 
G 4 HOH B 11 1111 37 HOH HOH . 
G 4 HOH B 12 1112 12 HOH HOH . 
G 4 HOH B 13 1113 36 HOH HOH . 
G 4 HOH B 14 1114 30 HOH HOH . 
G 4 HOH B 15 1115 33 HOH HOH . 
G 4 HOH B 16 1116 28 HOH HOH . 
G 4 HOH B 17 1117 24 HOH HOH . 
G 4 HOH B 18 1118 31 HOH HOH . 
G 4 HOH B 19 1119 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 -31.54 15.183 -29.787 1 23.73 ? PA FAD 1001 A 1 
HETATM 2 O O1A FAD . . . C 2 -32.186 16.507 -29.539 1 24.08 ? O1A FAD 1001 A 1 
HETATM 3 O O2A FAD . . . C 2 -30.09 15.166 -30.177 1 24.24 ? O2A FAD 1001 A 1 
HETATM 4 O O5B FAD . . . C 2 -32.337 14.401 -30.946 1 25.15 ? O5B FAD 1001 A 1 
HETATM 5 C C5B FAD . . . C 2 -33.762 14.349 -30.951 1 25.47 ? C5B FAD 1001 A 1 
HETATM 6 C C4B FAD . . . C 2 -34.198 13.701 -32.251 1 26.35 ? C4B FAD 1001 A 1 
HETATM 7 O O4B FAD . . . C 2 -35.594 13.42 -32.223 1 27.17 ? O4B FAD 1001 A 1 
HETATM 8 C C3B FAD . . . C 2 -33.972 14.577 -33.478 1 26.54 ? C3B FAD 1001 A 1 
HETATM 9 O O3B FAD . . . C 2 -33.408 13.814 -34.555 1 25.32 ? O3B FAD 1001 A 1 
HETATM 10 C C2B FAD . . . C 2 -35.357 15.099 -33.8 1 26.97 ? C2B FAD 1001 A 1 
HETATM 11 O O2B FAD . . . C 2 -35.516 15.527 -35.157 1 26.42 ? O2B FAD 1001 A 1 
HETATM 12 C C1B FAD . . . C 2 -36.171 13.878 -33.442 1 27.09 ? C1B FAD 1001 A 1 
HETATM 13 N N9A FAD . . . C 2 -37.598 14.113 -33.176 1 27.78 ? N9A FAD 1001 A 1 
HETATM 14 C C8A FAD . . . C 2 -38.111 14.907 -32.223 1 28.15 ? C8A FAD 1001 A 1 
HETATM 15 N N7A FAD . . . C 2 -39.466 14.869 -32.237 1 28.17 ? N7A FAD 1001 A 1 
HETATM 16 C C5A FAD . . . C 2 -39.821 14.033 -33.22 1 29.09 ? C5A FAD 1001 A 1 
HETATM 17 C C6A FAD . . . C 2 -41.099 13.54 -33.778 1 30.7 ? C6A FAD 1001 A 1 
HETATM 18 N N6A FAD . . . C 2 -42.281 13.969 -33.254 1 31.84 ? N6A FAD 1001 A 1 
HETATM 19 N N1A FAD . . . C 2 -41.025 12.655 -34.809 1 29.52 ? N1A FAD 1001 A 1 
HETATM 20 C C2A FAD . . . C 2 -39.844 12.229 -35.322 1 28.7 ? C2A FAD 1001 A 1 
HETATM 21 N N3A FAD . . . C 2 -38.652 12.645 -34.865 1 27.48 ? N3A FAD 1001 A 1 
HETATM 22 C C4A FAD . . . C 2 -38.585 13.526 -33.837 1 28.21 ? C4A FAD 1001 A 1 
HETATM 23 N N1 FAD . . . C 2 -23.923 18.089 -25.484 1 28.5 ? N1 FAD 1001 A 1 
HETATM 24 C C2 FAD . . . C 2 -22.661 17.632 -25.578 1 27.71 ? C2 FAD 1001 A 1 
HETATM 25 O O2 FAD . . . C 2 -22.478 16.457 -25.204 1 27.98 ? O2 FAD 1001 A 1 
HETATM 26 N N3 FAD . . . C 2 -21.644 18.384 -26.043 1 27.73 ? N3 FAD 1001 A 1 
HETATM 27 C C4 FAD . . . C 2 -21.834 19.656 -26.431 1 27.7 ? C4 FAD 1001 A 1 
HETATM 28 O O4 FAD . . . C 2 -20.89 20.339 -26.858 1 27.16 ? O4 FAD 1001 A 1 
HETATM 29 C C4X FAD . . . C 2 -23.202 20.226 -26.365 1 28.06 ? C4X FAD 1001 A 1 
HETATM 30 N N5 FAD . . . C 2 -23.475 21.493 -26.729 1 27.77 ? N5 FAD 1001 A 1 
HETATM 31 C C5X FAD . . . C 2 -24.726 21.982 -26.623 1 28.06 ? C5X FAD 1001 A 1 
HETATM 32 C C6 FAD . . . C 2 -24.934 23.293 -27.011 1 28.13 ? C6 FAD 1001 A 1 
HETATM 33 C C7 FAD . . . C 2 -26.187 23.875 -26.939 1 28.15 ? C7 FAD 1001 A 1 
HETATM 34 C C7M FAD . . . C 2 -26.341 25.297 -27.391 1 28.27 ? C7M FAD 1001 A 1 
HETATM 35 C C8 FAD . . . C 2 -27.336 23.077 -26.43 1 29.45 ? C8 FAD 1001 A 1 
HETATM 36 C C8M FAD . . . C 2 -28.709 23.691 -26.338 1 30.04 ? C8M FAD 1001 A 1 
HETATM 37 C C9 FAD . . . C 2 -27.138 21.75 -26.032 1 29.27 ? C9 FAD 1001 A 1 
HETATM 38 C C9A FAD . . . C 2 -25.866 21.156 -26.099 1 28.56 ? C9A FAD 1001 A 1 
HETATM 39 N N10 FAD . . . C 2 -25.594 19.818 -25.698 1 27.94 ? N10 FAD 1001 A 1 
HETATM 40 C C10 FAD . . . C 2 -24.271 19.343 -25.843 1 28.21 ? C10 FAD 1001 A 1 
HETATM 41 C C1' FAD . . . C 2 -26.607 18.886 -25.173 1 28.08 ? C1' FAD 1001 A 1 
HETATM 42 C C2' FAD . . . C 2 -27.116 18.021 -26.328 1 28.29 ? C2' FAD 1001 A 1 
HETATM 43 O O2' FAD . . . C 2 -27.748 18.874 -27.3 1 29.94 ? O2' FAD 1001 A 1 
HETATM 44 C C3' FAD . . . C 2 -28.127 16.956 -25.906 1 27.55 ? C3' FAD 1001 A 1 
HETATM 45 O O3' FAD . . . C 2 -27.732 16.319 -24.681 1 27.27 ? O3' FAD 1001 A 1 
HETATM 46 C C4' FAD . . . C 2 -28.303 15.915 -27.012 1 26.28 ? C4' FAD 1001 A 1 
HETATM 47 O O4' FAD . . . C 2 -28.591 16.557 -28.259 1 25.32 ? O4' FAD 1001 A 1 
HETATM 48 C C5' FAD . . . C 2 -29.436 14.956 -26.67 1 25.55 ? C5' FAD 1001 A 1 
HETATM 49 O O5' FAD . . . C 2 -29.495 13.927 -27.653 1 24.87 ? O5' FAD 1001 A 1 
HETATM 50 P P FAD . . . C 2 -30.882 13.147 -27.886 1 23.96 ? P FAD 1001 A 1 
HETATM 51 O O1P FAD . . . C 2 -30.658 12.044 -28.882 1 23.71 ? O1P FAD 1001 A 1 
HETATM 52 O O2P FAD . . . C 2 -31.448 12.797 -26.539 1 24.53 ? O2P FAD 1001 A 1 
HETATM 53 O O3P FAD . . . C 2 -31.846 14.296 -28.481 1 24.08 ? O3P FAD 1001 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#