data_5M5J
#
_model_server_result.job_id            foeTpITjgoRHxovkaK-5lA 
_model_server_result.datetime_utc      '2024-11-23 00:00:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1002}' 
#
_entry.id    5M5J 
#
_exptl.entry_id    5M5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5M5J 
_cell.length_a            85.643 
_cell.length_b            85.643 
_cell.length_c            163.221 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5M5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 148 A CYS 137 1_555 A SG CYS 151 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 B SG CYS 148 B CYS 137 1_555 B SG CYS 151 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 B OE2 GLU 93 B GLU 82 1_555 E NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc2 B OE2 GLU 114 B GLU 103 1_555 E NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5M5J 
_atom_sites.fract_transf_matrix[1][1]    0.011676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1001 1001 FAD FAD . 
D 2 FAD B 1 1001 1001 FAD FAD . 
E 3 NA B 1 1002 1 NA NA . 
F 4 HOH A 1 1101 11 HOH HOH . 
F 4 HOH A 2 1102 15 HOH HOH . 
F 4 HOH A 3 1103 25 HOH HOH . 
F 4 HOH A 4 1104 27 HOH HOH . 
F 4 HOH A 5 1105 14 HOH HOH . 
F 4 HOH A 6 1106 6 HOH HOH . 
F 4 HOH A 7 1107 17 HOH HOH . 
F 4 HOH A 8 1108 32 HOH HOH . 
F 4 HOH A 9 1109 8 HOH HOH . 
F 4 HOH A 10 1110 18 HOH HOH . 
F 4 HOH A 11 1111 13 HOH HOH . 
F 4 HOH A 12 1112 5 HOH HOH . 
F 4 HOH A 13 1113 34 HOH HOH . 
F 4 HOH A 14 1114 19 HOH HOH . 
F 4 HOH A 15 1115 7 HOH HOH . 
F 4 HOH A 16 1116 9 HOH HOH . 
F 4 HOH A 17 1117 26 HOH HOH . 
F 4 HOH A 18 1118 16 HOH HOH . 
F 4 HOH A 19 1119 21 HOH HOH . 
F 4 HOH A 20 1120 23 HOH HOH . 
G 4 HOH B 1 1101 22 HOH HOH . 
G 4 HOH B 2 1102 38 HOH HOH . 
G 4 HOH B 3 1103 1 HOH HOH . 
G 4 HOH B 4 1104 39 HOH HOH . 
G 4 HOH B 5 1105 10 HOH HOH . 
G 4 HOH B 6 1106 3 HOH HOH . 
G 4 HOH B 7 1107 2 HOH HOH . 
G 4 HOH B 8 1108 40 HOH HOH . 
G 4 HOH B 9 1109 35 HOH HOH . 
G 4 HOH B 10 1110 4 HOH HOH . 
G 4 HOH B 11 1111 37 HOH HOH . 
G 4 HOH B 12 1112 12 HOH HOH . 
G 4 HOH B 13 1113 36 HOH HOH . 
G 4 HOH B 14 1114 30 HOH HOH . 
G 4 HOH B 15 1115 33 HOH HOH . 
G 4 HOH B 16 1116 28 HOH HOH . 
G 4 HOH B 17 1117 24 HOH HOH . 
G 4 HOH B 18 1118 31 HOH HOH . 
G 4 HOH B 19 1119 29 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               3.582 
_atom_site.Cartn_y               10.356 
_atom_site.Cartn_z               -9.795 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#