data_5M5L
#
_model_server_result.job_id            APnmI6in8dK6ETlkbzM3Rg 
_model_server_result.datetime_utc      '2024-11-13 06:23:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5m5l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":502}' 
#
_entry.id    5M5L 
#
_exptl.entry_id    5M5L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG MG . A MG 501 1_555 E O3G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc2 H MG MG . C MG 501 1_555 I O2B ANP . C ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 H MG MG . C MG 501 1_555 I O3G ANP . C ANP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5M5L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG A 1 501 1208 MG MG . 
E 5 GTP A 1 502 1209 GTP GTP . 
F 6 GDP B 1 501 1222 GDP GDP . 
G 7 TA1 B 1 502 1223 TA1 TA1 . 
H 4 MG C 1 501 1218 MG MG . 
I 8 ANP C 1 502 1219 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 8 156.526 266.779 235.738 1 20.41 ? PG ANP 502 C 1 
HETATM 2 O O1G ANP . . . I 8 157.838 267.297 235.177 1 26.84 ? O1G ANP 502 C 1 
HETATM 3 O O2G ANP . . . I 8 156.634 265.272 235.885 1 25.94 ? O2G ANP 502 C 1 
HETATM 4 O O3G ANP . . . I 8 156.206 267.405 237.071 1 23.04 ? O3G ANP 502 C 1 
HETATM 5 P PB ANP . . . I 8 153.764 266.829 235.112 1 20.99 ? PB ANP 502 C 1 
HETATM 6 O O1B ANP . . . I 8 153.523 265.405 234.872 1 15.19 ? O1B ANP 502 C 1 
HETATM 7 O O2B ANP . . . I 8 153.357 267.235 236.604 1 19.7 ? O2B ANP 502 C 1 
HETATM 8 N N3B ANP . . . I 8 155.366 267.226 234.668 1 20.7 ? N3B ANP 502 C 1 
HETATM 9 P PA ANP . . . I 8 151.652 268.002 234.32 1 21.44 ? PA ANP 502 C 1 
HETATM 10 O O1A ANP . . . I 8 150.484 267.305 233.535 1 31.7 ? O1A ANP 502 C 1 
HETATM 11 O O2A ANP . . . I 8 151.469 269.246 235.084 1 25.85 ? O2A ANP 502 C 1 
HETATM 12 O O3A ANP . . . I 8 153.112 267.704 233.996 1 23.35 ? O3A ANP 502 C 1 
HETATM 13 O O5' ANP . . . I 8 151.938 268.894 232.865 1 27.89 ? O5' ANP 502 C 1 
HETATM 14 C C5' ANP . . . I 8 150.831 269.639 232.757 1 29.64 ? C5' ANP 502 C 1 
HETATM 15 C C4' ANP . . . I 8 150.51 270.532 231.624 1 29.22 ? C4' ANP 502 C 1 
HETATM 16 O O4' ANP . . . I 8 150.048 269.553 230.611 1 25.83 ? O4' ANP 502 C 1 
HETATM 17 C C3' ANP . . . I 8 149.314 271.052 232.335 1 29.24 ? C3' ANP 502 C 1 
HETATM 18 O O3' ANP . . . I 8 149.151 272.495 232.292 1 35.17 ? O3' ANP 502 C 1 
HETATM 19 C C2' ANP . . . I 8 148.081 270.343 231.826 1 27.71 ? C2' ANP 502 C 1 
HETATM 20 O O2' ANP . . . I 8 146.946 271.141 231.505 1 31.26 ? O2' ANP 502 C 1 
HETATM 21 C C1' ANP . . . I 8 148.581 269.49 230.645 1 24 ? C1' ANP 502 C 1 
HETATM 22 N N9 ANP . . . I 8 147.918 268.235 230.774 1 21.2 ? N9 ANP 502 C 1 
HETATM 23 C C8 ANP . . . I 8 148.345 267.093 231.385 1 20.13 ? C8 ANP 502 C 1 
HETATM 24 N N7 ANP . . . I 8 147.397 266.184 231.321 1 19.75 ? N7 ANP 502 C 1 
HETATM 25 C C5 ANP . . . I 8 146.323 266.697 230.689 1 17.27 ? C5 ANP 502 C 1 
HETATM 26 C C6 ANP . . . I 8 145.037 266.175 230.339 1 14.55 ? C6 ANP 502 C 1 
HETATM 27 N N6 ANP . . . I 8 144.68 264.897 230.705 1 14.13 ? N6 ANP 502 C 1 
HETATM 28 N N1 ANP . . . I 8 144.169 266.967 229.676 1 15.48 ? N1 ANP 502 C 1 
HETATM 29 C C2 ANP . . . I 8 144.485 268.225 229.328 1 18 ? C2 ANP 502 C 1 
HETATM 30 N N3 ANP . . . I 8 145.693 268.745 229.64 1 18.17 ? N3 ANP 502 C 1 
HETATM 31 C C4 ANP . . . I 8 146.619 268.027 230.322 1 19.25 ? C4 ANP 502 C 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#