data_5M5Q # _model_server_result.job_id f73b19FZIqxCZ2BolFJTnA _model_server_result.datetime_utc '2024-11-04 22:14:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5M5Q # _exptl.entry_id 5M5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.642 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3~{R})-3-(1~{H}-benzimidazol-2-yl)morpholin-4-yl]-3-[2-(4-methyl-2-phenyl-phenyl)-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M5Q _cell.length_a 102.365 _cell.length_b 102.365 _cell.length_c 69.048 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 138 A HIS 138 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A NE2 HIS 140 A HIS 140 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc3 A OD2 ASP 151 A ASP 151 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N4 7K1 . A 7K1 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'C34 H31 N5 O2' _chem_comp.formula_weight 541.642 _chem_comp.id 7K1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3~{R})-3-(1~{H}-benzimidazol-2-yl)morpholin-4-yl]-3-[2-(4-methyl-2-phenyl-phenyl)-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C17 7K1 sing 1 n n C17 C16 7K1 doub 2 n y C17 C18 7K1 sing 3 n y C37 C38 7K1 doub 4 n y C37 C36 7K1 sing 5 n y C16 C15 7K1 sing 6 n y C38 C39 7K1 sing 7 n y C18 C19 7K1 doub 8 n y C36 C35 7K1 doub 9 n y C15 C20 7K1 sing 10 n n C15 C14 7K1 doub 11 n y C39 C34 7K1 doub 12 n y C19 C14 7K1 sing 13 n y C35 C34 7K1 sing 14 n y C35 N41 7K1 sing 15 n y C25 C20 7K1 doub 16 n y C25 C24 7K1 sing 17 n y C20 C21 7K1 sing 18 n y C14 C11 7K1 sing 19 n n C34 N40 7K1 sing 20 n y C24 C23 7K1 doub 21 n y N41 C33 7K1 doub 22 n y C21 C22 7K1 doub 23 n y C23 C22 7K1 sing 24 n y N40 C33 7K1 sing 25 n y C33 C31 7K1 sing 26 n n C11 N7 7K1 sing 27 n y C11 C1 7K1 doub 28 n y N7 C6 7K1 sing 29 n y O13 C12 7K1 doub 30 n n C8 C1 7K1 sing 31 n n C8 C9 7K1 sing 32 n n C1 C5 7K1 sing 33 n y C12 C9 7K1 sing 34 n n C12 N27 7K1 sing 35 n n C31 N27 7K1 sing 36 n n C31 C30 7K1 sing 37 n n N27 C28 7K1 sing 38 n n C6 C5 7K1 doub 39 n y C6 N4 7K1 sing 40 n y C5 C10 7K1 sing 41 n y C28 C29 7K1 sing 42 n n C30 O32 7K1 sing 43 n n N4 C3 7K1 doub 44 n y O32 C29 7K1 sing 45 n n C10 C2 7K1 doub 46 n y C3 C2 7K1 sing 47 n y C2 H1 7K1 sing 48 n n C3 H2 7K1 sing 49 n n C16 H3 7K1 sing 50 n n C18 H4 7K1 sing 51 n n C19 H5 7K1 sing 52 n n C21 H6 7K1 sing 53 n n C22 H7 7K1 sing 54 n n C23 H8 7K1 sing 55 n n C24 H9 7K1 sing 56 n n C25 H10 7K1 sing 57 n n C26 H11 7K1 sing 58 n n C26 H12 7K1 sing 59 n n C26 H13 7K1 sing 60 n n C28 H14 7K1 sing 61 n n C28 H15 7K1 sing 62 n n C29 H16 7K1 sing 63 n n C29 H17 7K1 sing 64 n n C30 H18 7K1 sing 65 n n C30 H19 7K1 sing 66 n n N7 H20 7K1 sing 67 n n C8 H21 7K1 sing 68 n n C8 H22 7K1 sing 69 n n C9 H23 7K1 sing 70 n n C9 H24 7K1 sing 71 n n C10 H25 7K1 sing 72 n n C31 H26 7K1 sing 73 n n C36 H27 7K1 sing 74 n n C37 H28 7K1 sing 75 n n C38 H29 7K1 sing 76 n n C39 H30 7K1 sing 77 n n N40 H31 7K1 sing 78 n n # _atom_sites.entry_id 5M5Q _atom_sites.fract_transf_matrix[1][1] 0.009769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 999 ZN ZN . C 3 7K1 A 1 302 1 7K1 LI1 . D 4 MPD A 1 303 1 MPD MPD . E 5 HOH A 1 401 50 HOH HOH . E 5 HOH A 2 402 24 HOH HOH . E 5 HOH A 3 403 2 HOH HOH . E 5 HOH A 4 404 1 HOH HOH . E 5 HOH A 5 405 3 HOH HOH . E 5 HOH A 6 406 32 HOH HOH . E 5 HOH A 7 407 39 HOH HOH . E 5 HOH A 8 408 53 HOH HOH . E 5 HOH A 9 409 35 HOH HOH . E 5 HOH A 10 410 26 HOH HOH . E 5 HOH A 11 411 49 HOH HOH . E 5 HOH A 12 412 38 HOH HOH . E 5 HOH A 13 413 6 HOH HOH . E 5 HOH A 14 414 10 HOH HOH . E 5 HOH A 15 415 37 HOH HOH . E 5 HOH A 16 416 48 HOH HOH . E 5 HOH A 17 417 45 HOH HOH . E 5 HOH A 18 418 7 HOH HOH . E 5 HOH A 19 419 8 HOH HOH . E 5 HOH A 20 420 43 HOH HOH . E 5 HOH A 21 421 17 HOH HOH . E 5 HOH A 22 422 5 HOH HOH . E 5 HOH A 23 423 28 HOH HOH . E 5 HOH A 24 424 36 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 4 HOH HOH . E 5 HOH A 27 427 31 HOH HOH . E 5 HOH A 28 428 30 HOH HOH . E 5 HOH A 29 429 13 HOH HOH . E 5 HOH A 30 430 12 HOH HOH . E 5 HOH A 31 431 25 HOH HOH . E 5 HOH A 32 432 15 HOH HOH . E 5 HOH A 33 433 9 HOH HOH . E 5 HOH A 34 434 14 HOH HOH . E 5 HOH A 35 435 46 HOH HOH . E 5 HOH A 36 436 19 HOH HOH . E 5 HOH A 37 437 21 HOH HOH . E 5 HOH A 38 438 22 HOH HOH . E 5 HOH A 39 439 23 HOH HOH . E 5 HOH A 40 440 52 HOH HOH . E 5 HOH A 41 441 33 HOH HOH . E 5 HOH A 42 442 20 HOH HOH . E 5 HOH A 43 443 42 HOH HOH . E 5 HOH A 44 444 51 HOH HOH . E 5 HOH A 45 445 34 HOH HOH . E 5 HOH A 46 446 16 HOH HOH . E 5 HOH A 47 447 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7K1 . . . C 3 29.758 -29.484 16.23 1 53.1 ? C1 7K1 302 A 1 HETATM 2 C C2 7K1 . . . C 3 28.687 -28.518 19.826 1 51.37 ? C2 7K1 302 A 1 HETATM 3 C C3 7K1 . . . C 3 27.678 -27.629 19.379 1 52.18 ? C3 7K1 302 A 1 HETATM 4 C C11 7K1 . . . C 3 29.034 -28.866 15.269 1 50.87 ? C11 7K1 302 A 1 HETATM 5 C C12 7K1 . . . C 3 31.416 -33.003 16.519 1 70.7 ? C12 7K1 302 A 1 HETATM 6 C C14 7K1 . . . C 3 29.225 -29.005 13.781 1 49.99 ? C14 7K1 302 A 1 HETATM 7 C C15 7K1 . . . C 3 29.023 -30.221 13.061 1 49.03 ? C15 7K1 302 A 1 HETATM 8 C C16 7K1 . . . C 3 29.253 -30.217 11.677 1 47.15 ? C16 7K1 302 A 1 HETATM 9 C C17 7K1 . . . C 3 29.646 -29.043 11.008 1 46.44 ? C17 7K1 302 A 1 HETATM 10 C C18 7K1 . . . C 3 29.796 -27.85 11.73 1 47.06 ? C18 7K1 302 A 1 HETATM 11 C C19 7K1 . . . C 3 29.617 -27.835 13.114 1 48.99 ? C19 7K1 302 A 1 HETATM 12 C C20 7K1 . . . C 3 28.534 -31.485 13.703 1 49.55 ? C20 7K1 302 A 1 HETATM 13 C C21 7K1 . . . C 3 27.428 -31.453 14.59 1 48 ? C21 7K1 302 A 1 HETATM 14 C C22 7K1 . . . C 3 26.972 -32.625 15.211 1 45.28 ? C22 7K1 302 A 1 HETATM 15 C C23 7K1 . . . C 3 27.579 -33.86 14.922 1 43.98 ? C23 7K1 302 A 1 HETATM 16 C C24 7K1 . . . C 3 28.654 -33.907 14.02 1 49.22 ? C24 7K1 302 A 1 HETATM 17 C C25 7K1 . . . C 3 29.128 -32.733 13.398 1 49.35 ? C25 7K1 302 A 1 HETATM 18 C C26 7K1 . . . C 3 29.853 -29.053 9.482 1 45.88 ? C26 7K1 302 A 1 HETATM 19 C C28 7K1 . . . C 3 29.854 -34.563 17.655 1 77 ? C28 7K1 302 A 1 HETATM 20 C C29 7K1 . . . C 3 30.142 -35.564 18.802 1 78.14 ? C29 7K1 302 A 1 HETATM 21 C C30 7K1 . . . C 3 32.112 -36.426 17.711 1 79.6 ? C30 7K1 302 A 1 HETATM 22 N N4 7K1 . . . C 3 27.448 -27.435 18.038 1 51.5 ? N4 7K1 302 A 1 HETATM 23 C C5 7K1 . . . C 3 29.189 -29.003 17.537 1 52.24 ? C5 7K1 302 A 1 HETATM 24 C C6 7K1 . . . C 3 28.196 -28.109 17.135 1 51.36 ? C6 7K1 302 A 1 HETATM 25 N N7 7K1 . . . C 3 28.192 -28.033 15.791 1 51.65 ? N7 7K1 302 A 1 HETATM 26 C C8 7K1 . . . C 3 30.859 -30.504 16.054 1 56.2 ? C8 7K1 302 A 1 HETATM 27 C C9 7K1 . . . C 3 30.519 -31.808 16.833 1 63.08 ? C9 7K1 302 A 1 HETATM 28 C C10 7K1 . . . C 3 29.493 -29.208 18.896 1 52.5 ? C10 7K1 302 A 1 HETATM 29 O O13 7K1 . . . C 3 32.439 -32.755 15.875 1 71.91 ? O13 7K1 302 A 1 HETATM 30 N N27 7K1 . . . C 3 31.116 -34.278 16.939 1 75.76 ? N27 7K1 302 A 1 HETATM 31 C C31 7K1 . . . C 3 32.015 -35.39 16.556 1 80.88 ? C31 7K1 302 A 1 HETATM 32 O O32 7K1 . . . C 3 30.823 -36.728 18.287 1 78.89 ? O32 7K1 302 A 1 HETATM 33 C C33 7K1 . . . C 3 31.645 -36.046 15.246 1 87.66 ? C33 7K1 302 A 1 HETATM 34 C C34 7K1 . . . C 3 30.572 -37.179 13.785 1 92.96 ? C34 7K1 302 A 1 HETATM 35 C C35 7K1 . . . C 3 31.591 -36.463 13.154 1 92.74 ? C35 7K1 302 A 1 HETATM 36 C C36 7K1 . . . C 3 31.809 -36.563 11.77 1 94.48 ? C36 7K1 302 A 1 HETATM 37 C C37 7K1 . . . C 3 30.945 -37.416 11.049 1 95.51 ? C37 7K1 302 A 1 HETATM 38 C C38 7K1 . . . C 3 29.91 -38.133 11.694 1 96.09 ? C38 7K1 302 A 1 HETATM 39 C C39 7K1 . . . C 3 29.7 -38.029 13.088 1 95.14 ? C39 7K1 302 A 1 HETATM 40 N N40 7K1 . . . C 3 30.67 -36.847 15.083 1 90.21 ? N40 7K1 302 A 1 HETATM 41 N N41 7K1 . . . C 3 32.229 -35.745 14.111 1 90.62 ? N41 7K1 302 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 168 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #