data_5M6E # _model_server_result.job_id NHN2LAg3dE4eQWqRIsH9xg _model_server_result.datetime_utc '2024-12-26 12:05:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5M6E # _exptl.entry_id 5M6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M6E _cell.length_a 71.525 _cell.length_b 71.525 _cell.length_c 105.693 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 45 A PHE 272 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc2 A O PHE 45 A PHE 272 1_555 C NA NA . A NA 402 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 A SG CYS 73 A CYS 300 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A SG CYS 76 A CYS 303 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc5 A NE2 HIS 93 A HIS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 A SG CYS 100 A CYS 327 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc7 C NA NA . A NA 402 1_555 F O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc8 C NA NA . A NA 402 1_555 F O HOH . A HOH 610 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M6E _atom_sites.fract_transf_matrix[1][1] 0.013981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 NA A 1 402 1 NA NA . D 4 DMS A 1 403 1 DMS DMS . E 5 7HT A 1 404 1 7HT L01 . F 6 HOH A 1 501 124 HOH HOH . F 6 HOH A 2 502 160 HOH HOH . F 6 HOH A 3 503 107 HOH HOH . F 6 HOH A 4 504 96 HOH HOH . F 6 HOH A 5 505 183 HOH HOH . F 6 HOH A 6 506 121 HOH HOH . F 6 HOH A 7 507 23 HOH HOH . F 6 HOH A 8 508 1 HOH HOH . F 6 HOH A 9 509 38 HOH HOH . F 6 HOH A 10 510 4 HOH HOH . F 6 HOH A 11 511 33 HOH HOH . F 6 HOH A 12 512 61 HOH HOH . F 6 HOH A 13 513 201 HOH HOH . F 6 HOH A 14 514 60 HOH HOH . F 6 HOH A 15 515 53 HOH HOH . F 6 HOH A 16 516 15 HOH HOH . F 6 HOH A 17 517 78 HOH HOH . F 6 HOH A 18 518 132 HOH HOH . F 6 HOH A 19 519 21 HOH HOH . F 6 HOH A 20 520 7 HOH HOH . F 6 HOH A 21 521 37 HOH HOH . F 6 HOH A 22 522 12 HOH HOH . F 6 HOH A 23 523 75 HOH HOH . F 6 HOH A 24 524 44 HOH HOH . F 6 HOH A 25 525 123 HOH HOH . F 6 HOH A 26 526 35 HOH HOH . F 6 HOH A 27 527 119 HOH HOH . F 6 HOH A 28 528 120 HOH HOH . F 6 HOH A 29 529 30 HOH HOH . F 6 HOH A 30 530 14 HOH HOH . F 6 HOH A 31 531 131 HOH HOH . F 6 HOH A 32 532 73 HOH HOH . F 6 HOH A 33 533 26 HOH HOH . F 6 HOH A 34 534 79 HOH HOH . F 6 HOH A 35 535 156 HOH HOH . F 6 HOH A 36 536 205 HOH HOH . F 6 HOH A 37 537 8 HOH HOH . F 6 HOH A 38 538 92 HOH HOH . F 6 HOH A 39 539 31 HOH HOH . F 6 HOH A 40 540 59 HOH HOH . F 6 HOH A 41 541 57 HOH HOH . F 6 HOH A 42 542 114 HOH HOH . F 6 HOH A 43 543 140 HOH HOH . F 6 HOH A 44 544 191 HOH HOH . F 6 HOH A 45 545 112 HOH HOH . F 6 HOH A 46 546 198 HOH HOH . F 6 HOH A 47 547 9 HOH HOH . F 6 HOH A 48 548 142 HOH HOH . F 6 HOH A 49 549 117 HOH HOH . F 6 HOH A 50 550 200 HOH HOH . F 6 HOH A 51 551 22 HOH HOH . F 6 HOH A 52 552 47 HOH HOH . F 6 HOH A 53 553 41 HOH HOH . F 6 HOH A 54 554 111 HOH HOH . F 6 HOH A 55 555 115 HOH HOH . F 6 HOH A 56 556 152 HOH HOH . F 6 HOH A 57 557 178 HOH HOH . F 6 HOH A 58 558 64 HOH HOH . F 6 HOH A 59 559 93 HOH HOH . F 6 HOH A 60 560 10 HOH HOH . F 6 HOH A 61 561 125 HOH HOH . F 6 HOH A 62 562 40 HOH HOH . F 6 HOH A 63 563 52 HOH HOH . F 6 HOH A 64 564 25 HOH HOH . F 6 HOH A 65 565 103 HOH HOH . F 6 HOH A 66 566 145 HOH HOH . F 6 HOH A 67 567 5 HOH HOH . F 6 HOH A 68 568 182 HOH HOH . F 6 HOH A 69 569 24 HOH HOH . F 6 HOH A 70 570 98 HOH HOH . F 6 HOH A 71 571 56 HOH HOH . F 6 HOH A 72 572 72 HOH HOH . F 6 HOH A 73 573 71 HOH HOH . F 6 HOH A 74 574 165 HOH HOH . F 6 HOH A 75 575 29 HOH HOH . F 6 HOH A 76 576 149 HOH HOH . F 6 HOH A 77 577 118 HOH HOH . F 6 HOH A 78 578 204 HOH HOH . F 6 HOH A 79 579 166 HOH HOH . F 6 HOH A 80 580 189 HOH HOH . F 6 HOH A 81 581 83 HOH HOH . F 6 HOH A 82 582 199 HOH HOH . F 6 HOH A 83 583 116 HOH HOH . F 6 HOH A 84 584 197 HOH HOH . F 6 HOH A 85 585 43 HOH HOH . F 6 HOH A 86 586 55 HOH HOH . F 6 HOH A 87 587 171 HOH HOH . F 6 HOH A 88 588 3 HOH HOH . F 6 HOH A 89 589 89 HOH HOH . F 6 HOH A 90 590 20 HOH HOH . F 6 HOH A 91 591 42 HOH HOH . F 6 HOH A 92 592 122 HOH HOH . F 6 HOH A 93 593 2 HOH HOH . F 6 HOH A 94 594 49 HOH HOH . F 6 HOH A 95 595 18 HOH HOH . F 6 HOH A 96 596 148 HOH HOH . F 6 HOH A 97 597 86 HOH HOH . F 6 HOH A 98 598 97 HOH HOH . F 6 HOH A 99 599 77 HOH HOH . F 6 HOH A 100 600 91 HOH HOH . F 6 HOH A 101 601 82 HOH HOH . F 6 HOH A 102 602 159 HOH HOH . F 6 HOH A 103 603 186 HOH HOH . F 6 HOH A 104 604 127 HOH HOH . F 6 HOH A 105 605 188 HOH HOH . F 6 HOH A 106 606 45 HOH HOH . F 6 HOH A 107 607 105 HOH HOH . F 6 HOH A 108 608 6 HOH HOH . F 6 HOH A 109 609 11 HOH HOH . F 6 HOH A 110 610 157 HOH HOH . F 6 HOH A 111 611 187 HOH HOH . F 6 HOH A 112 612 158 HOH HOH . F 6 HOH A 113 613 63 HOH HOH . F 6 HOH A 114 614 184 HOH HOH . F 6 HOH A 115 615 80 HOH HOH . F 6 HOH A 116 616 13 HOH HOH . F 6 HOH A 117 617 46 HOH HOH . F 6 HOH A 118 618 170 HOH HOH . F 6 HOH A 119 619 106 HOH HOH . F 6 HOH A 120 620 19 HOH HOH . F 6 HOH A 121 621 134 HOH HOH . F 6 HOH A 122 622 136 HOH HOH . F 6 HOH A 123 623 151 HOH HOH . F 6 HOH A 124 624 192 HOH HOH . F 6 HOH A 125 625 154 HOH HOH . F 6 HOH A 126 626 109 HOH HOH . F 6 HOH A 127 627 32 HOH HOH . F 6 HOH A 128 628 84 HOH HOH . F 6 HOH A 129 629 95 HOH HOH . F 6 HOH A 130 630 108 HOH HOH . F 6 HOH A 131 631 138 HOH HOH . F 6 HOH A 132 632 28 HOH HOH . F 6 HOH A 133 633 102 HOH HOH . F 6 HOH A 134 634 177 HOH HOH . F 6 HOH A 135 635 36 HOH HOH . F 6 HOH A 136 636 99 HOH HOH . F 6 HOH A 137 637 143 HOH HOH . F 6 HOH A 138 638 27 HOH HOH . F 6 HOH A 139 639 74 HOH HOH . F 6 HOH A 140 640 100 HOH HOH . F 6 HOH A 141 641 196 HOH HOH . F 6 HOH A 142 642 16 HOH HOH . F 6 HOH A 143 643 70 HOH HOH . F 6 HOH A 144 644 185 HOH HOH . F 6 HOH A 145 645 81 HOH HOH . F 6 HOH A 146 646 207 HOH HOH . F 6 HOH A 147 647 94 HOH HOH . F 6 HOH A 148 648 69 HOH HOH . F 6 HOH A 149 649 68 HOH HOH . F 6 HOH A 150 650 161 HOH HOH . F 6 HOH A 151 651 129 HOH HOH . F 6 HOH A 152 652 130 HOH HOH . F 6 HOH A 153 653 17 HOH HOH . F 6 HOH A 154 654 58 HOH HOH . F 6 HOH A 155 655 176 HOH HOH . F 6 HOH A 156 656 85 HOH HOH . F 6 HOH A 157 657 62 HOH HOH . F 6 HOH A 158 658 174 HOH HOH . F 6 HOH A 159 659 155 HOH HOH . F 6 HOH A 160 660 181 HOH HOH . F 6 HOH A 161 661 195 HOH HOH . F 6 HOH A 162 662 133 HOH HOH . F 6 HOH A 163 663 162 HOH HOH . F 6 HOH A 164 664 193 HOH HOH . F 6 HOH A 165 665 141 HOH HOH . F 6 HOH A 166 666 144 HOH HOH . F 6 HOH A 167 667 169 HOH HOH . F 6 HOH A 168 668 128 HOH HOH . F 6 HOH A 169 669 65 HOH HOH . F 6 HOH A 170 670 104 HOH HOH . F 6 HOH A 171 671 34 HOH HOH . F 6 HOH A 172 672 167 HOH HOH . F 6 HOH A 173 673 202 HOH HOH . F 6 HOH A 174 674 87 HOH HOH . F 6 HOH A 175 675 101 HOH HOH . F 6 HOH A 176 676 194 HOH HOH . F 6 HOH A 177 677 67 HOH HOH . F 6 HOH A 178 678 66 HOH HOH . F 6 HOH A 179 679 163 HOH HOH . F 6 HOH A 180 680 137 HOH HOH . F 6 HOH A 181 681 146 HOH HOH . F 6 HOH A 182 682 168 HOH HOH . F 6 HOH A 183 683 54 HOH HOH . F 6 HOH A 184 684 126 HOH HOH . F 6 HOH A 185 685 203 HOH HOH . F 6 HOH A 186 686 88 HOH HOH . F 6 HOH A 187 687 90 HOH HOH . F 6 HOH A 188 688 179 HOH HOH . F 6 HOH A 189 689 113 HOH HOH . F 6 HOH A 190 690 39 HOH HOH . F 6 HOH A 191 691 153 HOH HOH . F 6 HOH A 192 692 150 HOH HOH . F 6 HOH A 193 693 110 HOH HOH . F 6 HOH A 194 694 50 HOH HOH . F 6 HOH A 195 695 147 HOH HOH . F 6 HOH A 196 696 206 HOH HOH . F 6 HOH A 197 697 190 HOH HOH . F 6 HOH A 198 698 135 HOH HOH . F 6 HOH A 199 699 48 HOH HOH . F 6 HOH A 200 700 172 HOH HOH . F 6 HOH A 201 701 51 HOH HOH . F 6 HOH A 202 702 139 HOH HOH . F 6 HOH A 203 703 180 HOH HOH . F 6 HOH A 204 704 173 HOH HOH . F 6 HOH A 205 705 164 HOH HOH . F 6 HOH A 206 706 76 HOH HOH . F 6 HOH A 207 707 175 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.59 _atom_site.Cartn_y -31.018 _atom_site.Cartn_z -9.405 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #