data_5M6I # _model_server_result.job_id 6aTP2WJRftgf6T8uOdRHFg _model_server_result.datetime_utc '2025-01-06 08:43:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m6i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5M6I # _exptl.entry_id 5M6I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M6I _cell.length_a 229.378 _cell.length_b 229.378 _cell.length_c 64.429 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M6I _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 B CYS 22 1_555 A SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 138 B CYS 138 1_555 A SG CYS 197 B CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 22 A CYS 22 1_555 B SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 138 A CYS 138 1_555 B SG CYS 197 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B C PCA 1 A PCA 1 1_555 B N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B OG SER 194 A SER 194 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc2 B OG SER 196 A SER 196 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M6I _atom_sites.fract_transf_matrix[1][1] 0.00436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 301 1 NA NA . D 3 NA A 1 302 2 NA NA . E 4 HOH B 1 301 322 HOH HOH . E 4 HOH B 2 302 140 HOH HOH . E 4 HOH B 3 303 111 HOH HOH . E 4 HOH B 4 304 157 HOH HOH . E 4 HOH B 5 305 186 HOH HOH . E 4 HOH B 6 306 77 HOH HOH . E 4 HOH B 7 307 178 HOH HOH . E 4 HOH B 8 308 183 HOH HOH . E 4 HOH B 9 309 49 HOH HOH . E 4 HOH B 10 310 28 HOH HOH . E 4 HOH B 11 311 33 HOH HOH . E 4 HOH B 12 312 244 HOH HOH . E 4 HOH B 13 313 192 HOH HOH . E 4 HOH B 14 314 292 HOH HOH . E 4 HOH B 15 315 275 HOH HOH . E 4 HOH B 16 316 167 HOH HOH . E 4 HOH B 17 317 176 HOH HOH . E 4 HOH B 18 318 279 HOH HOH . E 4 HOH B 19 319 48 HOH HOH . E 4 HOH B 20 320 60 HOH HOH . E 4 HOH B 21 321 113 HOH HOH . E 4 HOH B 22 322 390 HOH HOH . E 4 HOH B 23 323 332 HOH HOH . E 4 HOH B 24 324 29 HOH HOH . E 4 HOH B 25 325 333 HOH HOH . E 4 HOH B 26 326 159 HOH HOH . E 4 HOH B 27 327 69 HOH HOH . E 4 HOH B 28 328 228 HOH HOH . E 4 HOH B 29 329 249 HOH HOH . E 4 HOH B 30 330 260 HOH HOH . E 4 HOH B 31 331 320 HOH HOH . E 4 HOH B 32 332 3 HOH HOH . E 4 HOH B 33 333 392 HOH HOH . E 4 HOH B 34 334 55 HOH HOH . E 4 HOH B 35 335 181 HOH HOH . E 4 HOH B 36 336 336 HOH HOH . E 4 HOH B 37 337 319 HOH HOH . E 4 HOH B 38 338 211 HOH HOH . E 4 HOH B 39 339 126 HOH HOH . E 4 HOH B 40 340 354 HOH HOH . E 4 HOH B 41 341 276 HOH HOH . E 4 HOH B 42 342 163 HOH HOH . E 4 HOH B 43 343 54 HOH HOH . E 4 HOH B 44 344 91 HOH HOH . E 4 HOH B 45 345 257 HOH HOH . E 4 HOH B 46 346 245 HOH HOH . E 4 HOH B 47 347 22 HOH HOH . E 4 HOH B 48 348 268 HOH HOH . E 4 HOH B 49 349 152 HOH HOH . E 4 HOH B 50 350 42 HOH HOH . E 4 HOH B 51 351 134 HOH HOH . E 4 HOH B 52 352 243 HOH HOH . E 4 HOH B 53 353 158 HOH HOH . E 4 HOH B 54 354 52 HOH HOH . E 4 HOH B 55 355 246 HOH HOH . E 4 HOH B 56 356 37 HOH HOH . E 4 HOH B 57 357 133 HOH HOH . E 4 HOH B 58 358 341 HOH HOH . E 4 HOH B 59 359 36 HOH HOH . E 4 HOH B 60 360 378 HOH HOH . E 4 HOH B 61 361 230 HOH HOH . E 4 HOH B 62 362 23 HOH HOH . E 4 HOH B 63 363 39 HOH HOH . E 4 HOH B 64 364 387 HOH HOH . E 4 HOH B 65 365 30 HOH HOH . E 4 HOH B 66 366 177 HOH HOH . E 4 HOH B 67 367 250 HOH HOH . E 4 HOH B 68 368 41 HOH HOH . E 4 HOH B 69 369 371 HOH HOH . E 4 HOH B 70 370 13 HOH HOH . E 4 HOH B 71 371 345 HOH HOH . E 4 HOH B 72 372 5 HOH HOH . E 4 HOH B 73 373 40 HOH HOH . E 4 HOH B 74 374 326 HOH HOH . E 4 HOH B 75 375 281 HOH HOH . E 4 HOH B 76 376 182 HOH HOH . E 4 HOH B 77 377 89 HOH HOH . E 4 HOH B 78 378 9 HOH HOH . E 4 HOH B 79 379 18 HOH HOH . E 4 HOH B 80 380 149 HOH HOH . E 4 HOH B 81 381 301 HOH HOH . E 4 HOH B 82 382 6 HOH HOH . E 4 HOH B 83 383 227 HOH HOH . E 4 HOH B 84 384 151 HOH HOH . E 4 HOH B 85 385 101 HOH HOH . E 4 HOH B 86 386 369 HOH HOH . E 4 HOH B 87 387 144 HOH HOH . E 4 HOH B 88 388 174 HOH HOH . E 4 HOH B 89 389 31 HOH HOH . E 4 HOH B 90 390 78 HOH HOH . E 4 HOH B 91 391 285 HOH HOH . E 4 HOH B 92 392 208 HOH HOH . E 4 HOH B 93 393 164 HOH HOH . E 4 HOH B 94 394 45 HOH HOH . E 4 HOH B 95 395 216 HOH HOH . E 4 HOH B 96 396 130 HOH HOH . E 4 HOH B 97 397 233 HOH HOH . E 4 HOH B 98 398 274 HOH HOH . E 4 HOH B 99 399 330 HOH HOH . E 4 HOH B 100 400 372 HOH HOH . E 4 HOH B 101 401 10 HOH HOH . E 4 HOH B 102 402 280 HOH HOH . E 4 HOH B 103 403 199 HOH HOH . E 4 HOH B 104 404 252 HOH HOH . E 4 HOH B 105 405 263 HOH HOH . E 4 HOH B 106 406 291 HOH HOH . E 4 HOH B 107 407 337 HOH HOH . E 4 HOH B 108 408 102 HOH HOH . E 4 HOH B 109 409 262 HOH HOH . E 4 HOH B 110 410 2 HOH HOH . E 4 HOH B 111 411 289 HOH HOH . E 4 HOH B 112 412 331 HOH HOH . E 4 HOH B 113 413 229 HOH HOH . E 4 HOH B 114 414 385 HOH HOH . E 4 HOH B 115 415 255 HOH HOH . E 4 HOH B 116 416 231 HOH HOH . E 4 HOH B 117 417 221 HOH HOH . E 4 HOH B 118 418 300 HOH HOH . E 4 HOH B 119 419 293 HOH HOH . E 4 HOH B 120 420 256 HOH HOH . E 4 HOH B 121 421 294 HOH HOH . E 4 HOH B 122 422 43 HOH HOH . E 4 HOH B 123 423 286 HOH HOH . E 4 HOH B 124 424 309 HOH HOH . E 4 HOH B 125 425 264 HOH HOH . E 4 HOH B 126 426 282 HOH HOH . E 4 HOH B 127 427 382 HOH HOH . E 4 HOH B 128 428 376 HOH HOH . E 4 HOH B 129 429 259 HOH HOH . F 4 HOH A 1 401 122 HOH HOH . F 4 HOH A 2 402 173 HOH HOH . F 4 HOH A 3 403 197 HOH HOH . F 4 HOH A 4 404 198 HOH HOH . F 4 HOH A 5 405 305 HOH HOH . F 4 HOH A 6 406 56 HOH HOH . F 4 HOH A 7 407 207 HOH HOH . F 4 HOH A 8 408 306 HOH HOH . F 4 HOH A 9 409 189 HOH HOH . F 4 HOH A 10 410 308 HOH HOH . F 4 HOH A 11 411 150 HOH HOH . F 4 HOH A 12 412 97 HOH HOH . F 4 HOH A 13 413 236 HOH HOH . F 4 HOH A 14 414 235 HOH HOH . F 4 HOH A 15 415 27 HOH HOH . F 4 HOH A 16 416 12 HOH HOH . F 4 HOH A 17 417 53 HOH HOH . F 4 HOH A 18 418 367 HOH HOH . F 4 HOH A 19 419 350 HOH HOH . F 4 HOH A 20 420 283 HOH HOH . F 4 HOH A 21 421 351 HOH HOH . F 4 HOH A 22 422 74 HOH HOH . F 4 HOH A 23 423 223 HOH HOH . F 4 HOH A 24 424 67 HOH HOH . F 4 HOH A 25 425 328 HOH HOH . F 4 HOH A 26 426 272 HOH HOH . F 4 HOH A 27 427 68 HOH HOH . F 4 HOH A 28 428 180 HOH HOH . F 4 HOH A 29 429 154 HOH HOH . F 4 HOH A 30 430 303 HOH HOH . F 4 HOH A 31 431 254 HOH HOH . F 4 HOH A 32 432 94 HOH HOH . F 4 HOH A 33 433 14 HOH HOH . F 4 HOH A 34 434 360 HOH HOH . F 4 HOH A 35 435 109 HOH HOH . F 4 HOH A 36 436 389 HOH HOH . F 4 HOH A 37 437 44 HOH HOH . F 4 HOH A 38 438 96 HOH HOH . F 4 HOH A 39 439 165 HOH HOH . F 4 HOH A 40 440 62 HOH HOH . F 4 HOH A 41 441 248 HOH HOH . F 4 HOH A 42 442 50 HOH HOH . F 4 HOH A 43 443 313 HOH HOH . F 4 HOH A 44 444 238 HOH HOH . F 4 HOH A 45 445 201 HOH HOH . F 4 HOH A 46 446 25 HOH HOH . F 4 HOH A 47 447 85 HOH HOH . F 4 HOH A 48 448 7 HOH HOH . F 4 HOH A 49 449 83 HOH HOH . F 4 HOH A 50 450 381 HOH HOH . F 4 HOH A 51 451 114 HOH HOH . F 4 HOH A 52 452 32 HOH HOH . F 4 HOH A 53 453 349 HOH HOH . F 4 HOH A 54 454 38 HOH HOH . F 4 HOH A 55 455 190 HOH HOH . F 4 HOH A 56 456 311 HOH HOH . F 4 HOH A 57 457 347 HOH HOH . F 4 HOH A 58 458 219 HOH HOH . F 4 HOH A 59 459 63 HOH HOH . F 4 HOH A 60 460 98 HOH HOH . F 4 HOH A 61 461 348 HOH HOH . F 4 HOH A 62 462 298 HOH HOH . F 4 HOH A 63 463 188 HOH HOH . F 4 HOH A 64 464 19 HOH HOH . F 4 HOH A 65 465 16 HOH HOH . F 4 HOH A 66 466 184 HOH HOH . F 4 HOH A 67 467 187 HOH HOH . F 4 HOH A 68 468 20 HOH HOH . F 4 HOH A 69 469 357 HOH HOH . F 4 HOH A 70 470 194 HOH HOH . F 4 HOH A 71 471 269 HOH HOH . F 4 HOH A 72 472 317 HOH HOH . F 4 HOH A 73 473 299 HOH HOH . F 4 HOH A 74 474 225 HOH HOH . F 4 HOH A 75 475 391 HOH HOH . F 4 HOH A 76 476 212 HOH HOH . F 4 HOH A 77 477 82 HOH HOH . F 4 HOH A 78 478 179 HOH HOH . F 4 HOH A 79 479 224 HOH HOH . F 4 HOH A 80 480 318 HOH HOH . F 4 HOH A 81 481 193 HOH HOH . F 4 HOH A 82 482 353 HOH HOH . F 4 HOH A 83 483 15 HOH HOH . F 4 HOH A 84 484 234 HOH HOH . F 4 HOH A 85 485 108 HOH HOH . F 4 HOH A 86 486 66 HOH HOH . F 4 HOH A 87 487 370 HOH HOH . F 4 HOH A 88 488 17 HOH HOH . F 4 HOH A 89 489 329 HOH HOH . F 4 HOH A 90 490 380 HOH HOH . F 4 HOH A 91 491 99 HOH HOH . F 4 HOH A 92 492 388 HOH HOH . F 4 HOH A 93 493 4 HOH HOH . F 4 HOH A 94 494 271 HOH HOH . F 4 HOH A 95 495 191 HOH HOH . F 4 HOH A 96 496 24 HOH HOH . F 4 HOH A 97 497 383 HOH HOH . F 4 HOH A 98 498 124 HOH HOH . F 4 HOH A 99 499 237 HOH HOH . F 4 HOH A 100 500 296 HOH HOH . F 4 HOH A 101 501 47 HOH HOH . F 4 HOH A 102 502 35 HOH HOH . F 4 HOH A 103 503 316 HOH HOH . F 4 HOH A 104 504 302 HOH HOH . F 4 HOH A 105 505 90 HOH HOH . F 4 HOH A 106 506 222 HOH HOH . F 4 HOH A 107 507 346 HOH HOH . F 4 HOH A 108 508 310 HOH HOH . F 4 HOH A 109 509 270 HOH HOH . F 4 HOH A 110 510 156 HOH HOH . F 4 HOH A 111 511 213 HOH HOH . F 4 HOH A 112 512 297 HOH HOH . F 4 HOH A 113 513 384 HOH HOH . F 4 HOH A 114 514 284 HOH HOH . F 4 HOH A 115 515 64 HOH HOH . F 4 HOH A 116 516 312 HOH HOH . F 4 HOH A 117 517 242 HOH HOH . F 4 HOH A 118 518 364 HOH HOH . F 4 HOH A 119 519 185 HOH HOH . F 4 HOH A 120 520 314 HOH HOH . F 4 HOH A 121 521 210 HOH HOH . F 4 HOH A 122 522 266 HOH HOH . F 4 HOH A 123 523 145 HOH HOH . F 4 HOH A 124 524 361 HOH HOH . F 4 HOH A 125 525 352 HOH HOH . F 4 HOH A 126 526 226 HOH HOH . F 4 HOH A 127 527 368 HOH HOH . F 4 HOH A 128 528 304 HOH HOH . F 4 HOH A 129 529 355 HOH HOH . F 4 HOH A 130 530 307 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 66.12 _atom_site.Cartn_y 48.569 _atom_site.Cartn_z 80.536 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 30.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #