data_5M6L # _model_server_result.job_id pgYanxHCzaO0wys-bbST0w _model_server_result.datetime_utc '2024-11-22 19:17:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5m6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5M6L # _exptl.entry_id 5M6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5M6L _cell.length_a 71.388 _cell.length_b 71.388 _cell.length_c 105.817 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 45 A PHE 272 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 A O PHE 45 A PHE 272 1_555 C NA NA . A NA 402 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 A SG CYS 73 A CYS 300 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc4 A SG CYS 76 A CYS 303 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 A NE2 HIS 93 A HIS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 A SG CYS 100 A CYS 327 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 C NA NA . A NA 402 1_555 E O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc8 C NA NA . A NA 402 1_555 E O HOH . A HOH 523 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc9 C NA NA . A NA 402 1_555 E O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 C NA NA . A NA 402 1_555 E O HOH . A HOH 551 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5M6L _atom_sites.fract_transf_matrix[1][1] 0.014008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 NA A 1 402 1 NA NA . D 4 7H9 A 1 403 1 7H9 L01 . E 5 HOH A 1 501 98 HOH HOH . E 5 HOH A 2 502 11 HOH HOH . E 5 HOH A 3 503 18 HOH HOH . E 5 HOH A 4 504 37 HOH HOH . E 5 HOH A 5 505 80 HOH HOH . E 5 HOH A 6 506 1 HOH HOH . E 5 HOH A 7 507 22 HOH HOH . E 5 HOH A 8 508 10 HOH HOH . E 5 HOH A 9 509 12 HOH HOH . E 5 HOH A 10 510 23 HOH HOH . E 5 HOH A 11 511 90 HOH HOH . E 5 HOH A 12 512 13 HOH HOH . E 5 HOH A 13 513 62 HOH HOH . E 5 HOH A 14 514 99 HOH HOH . E 5 HOH A 15 515 87 HOH HOH . E 5 HOH A 16 516 64 HOH HOH . E 5 HOH A 17 517 85 HOH HOH . E 5 HOH A 18 518 92 HOH HOH . E 5 HOH A 19 519 77 HOH HOH . E 5 HOH A 20 520 19 HOH HOH . E 5 HOH A 21 521 83 HOH HOH . E 5 HOH A 22 522 39 HOH HOH . E 5 HOH A 23 523 9 HOH HOH . E 5 HOH A 24 524 27 HOH HOH . E 5 HOH A 25 525 33 HOH HOH . E 5 HOH A 26 526 21 HOH HOH . E 5 HOH A 27 527 71 HOH HOH . E 5 HOH A 28 528 41 HOH HOH . E 5 HOH A 29 529 29 HOH HOH . E 5 HOH A 30 530 108 HOH HOH . E 5 HOH A 31 531 57 HOH HOH . E 5 HOH A 32 532 78 HOH HOH . E 5 HOH A 33 533 100 HOH HOH . E 5 HOH A 34 534 51 HOH HOH . E 5 HOH A 35 535 52 HOH HOH . E 5 HOH A 36 536 60 HOH HOH . E 5 HOH A 37 537 7 HOH HOH . E 5 HOH A 38 538 20 HOH HOH . E 5 HOH A 39 539 50 HOH HOH . E 5 HOH A 40 540 5 HOH HOH . E 5 HOH A 41 541 65 HOH HOH . E 5 HOH A 42 542 74 HOH HOH . E 5 HOH A 43 543 86 HOH HOH . E 5 HOH A 44 544 36 HOH HOH . E 5 HOH A 45 545 6 HOH HOH . E 5 HOH A 46 546 34 HOH HOH . E 5 HOH A 47 547 63 HOH HOH . E 5 HOH A 48 548 40 HOH HOH . E 5 HOH A 49 549 102 HOH HOH . E 5 HOH A 50 550 61 HOH HOH . E 5 HOH A 51 551 79 HOH HOH . E 5 HOH A 52 552 55 HOH HOH . E 5 HOH A 53 553 8 HOH HOH . E 5 HOH A 54 554 67 HOH HOH . E 5 HOH A 55 555 54 HOH HOH . E 5 HOH A 56 556 2 HOH HOH . E 5 HOH A 57 557 32 HOH HOH . E 5 HOH A 58 558 28 HOH HOH . E 5 HOH A 59 559 17 HOH HOH . E 5 HOH A 60 560 26 HOH HOH . E 5 HOH A 61 561 45 HOH HOH . E 5 HOH A 62 562 111 HOH HOH . E 5 HOH A 63 563 76 HOH HOH . E 5 HOH A 64 564 4 HOH HOH . E 5 HOH A 65 565 3 HOH HOH . E 5 HOH A 66 566 84 HOH HOH . E 5 HOH A 67 567 116 HOH HOH . E 5 HOH A 68 568 38 HOH HOH . E 5 HOH A 69 569 46 HOH HOH . E 5 HOH A 70 570 70 HOH HOH . E 5 HOH A 71 571 69 HOH HOH . E 5 HOH A 72 572 101 HOH HOH . E 5 HOH A 73 573 82 HOH HOH . E 5 HOH A 74 574 112 HOH HOH . E 5 HOH A 75 575 24 HOH HOH . E 5 HOH A 76 576 88 HOH HOH . E 5 HOH A 77 577 89 HOH HOH . E 5 HOH A 78 578 30 HOH HOH . E 5 HOH A 79 579 73 HOH HOH . E 5 HOH A 80 580 104 HOH HOH . E 5 HOH A 81 581 114 HOH HOH . E 5 HOH A 82 582 25 HOH HOH . E 5 HOH A 83 583 68 HOH HOH . E 5 HOH A 84 584 81 HOH HOH . E 5 HOH A 85 585 48 HOH HOH . E 5 HOH A 86 586 115 HOH HOH . E 5 HOH A 87 587 110 HOH HOH . E 5 HOH A 88 588 31 HOH HOH . E 5 HOH A 89 589 44 HOH HOH . E 5 HOH A 90 590 59 HOH HOH . E 5 HOH A 91 591 53 HOH HOH . E 5 HOH A 92 592 49 HOH HOH . E 5 HOH A 93 593 14 HOH HOH . E 5 HOH A 94 594 94 HOH HOH . E 5 HOH A 95 595 58 HOH HOH . E 5 HOH A 96 596 16 HOH HOH . E 5 HOH A 97 597 95 HOH HOH . E 5 HOH A 98 598 109 HOH HOH . E 5 HOH A 99 599 66 HOH HOH . E 5 HOH A 100 600 96 HOH HOH . E 5 HOH A 101 601 47 HOH HOH . E 5 HOH A 102 602 75 HOH HOH . E 5 HOH A 103 603 35 HOH HOH . E 5 HOH A 104 604 56 HOH HOH . E 5 HOH A 105 605 15 HOH HOH . E 5 HOH A 106 606 93 HOH HOH . E 5 HOH A 107 607 97 HOH HOH . E 5 HOH A 108 608 43 HOH HOH . E 5 HOH A 109 609 72 HOH HOH . E 5 HOH A 110 610 42 HOH HOH . E 5 HOH A 111 611 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y -29.604 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 49.7 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #